Introduction of an single nucleotide polymorphism-based "Major Y-chromosome haplogroup typing kit" suitable for predicting the geographical origin of male lineages

Electrophoresis

Volumn 26, Issue 23, 2005, Pages 4411-4420

  Brión, María ^a   Sanchez, Juan J ^b   Balogh, Kinga ^c   Thacker, Catherine ^d   Blanco Verea, Alejandro ^a   Børsting, Claus ^b   Stradmann Bellinghausen, Beate ^c   Bogus, Magdalena ^c   Syndercombe Court, Denise ^d   Schneider, Peter M ^c   Carracedo, Angel ^a   Morling, Niels ^b  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c JOHANNES GUTENBERG UNIVERSITY   (Germany)

^d QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

Capillary electrophoresis; Geographic origin; Multiplex; Single base extension; Y SNPs

Indexed keywords

GEOGRAPHICAL DISTRIBUTION; NUCLEOTIDES; POLYMORPHISM;

FORENSIC IDENTIFICATION; GEOGRAPHIC ORIGINS; GEOGRAPHICAL ORIGINS; HAPLOGROUP; HIGH-THROUGHPUT ANALYSIS; MULTIPLEX; SINGLE NUCLEOTIDE POLYMORPHISMS; SINGLE-BASE EXTENSIONS; Y CHROMOSOMES; Y-SINGLE NUCLEOTIDE POLYMORPHISM;

CAPILLARY ELECTROPHORESIS;

ARTICLE; CONTROLLED STUDY; GENE FREQUENCY; GENE IDENTIFICATION; GENE LOCUS; GENE SEQUENCE; GENETIC SCREENING; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HIGH THROUGHPUT SCREENING; HUMAN; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POPULATION DISTRIBUTION; POPULATION GENETICS; SEPARATION TECHNIQUE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS; STATISTICAL SIGNIFICANCE; Y CHROMOSOME; AFRICA; ASIA; EUROPE; FEMALE; GENETICS; PHYLOGENY; SOUTH AMERICA;

PRIMER DNA;

AFRICA; ASIA; CHROMOSOMES, HUMAN, Y; DNA PRIMERS; EUROPE; FEMALE; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MALE; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; SOUTH AMERICA;

EID: 29244453939     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/elps.200500293     Document Type: Article

References (35)

1. Rosser, Z. H., Zerjal, T., Hurles, M. E., Adojaan, M., et al., Am. J. Hum. Genet. 2000, 67, 1526-1543.
2. Arredi, B., Poloni, E. S., Paracchini, S., Zerjal, T., et al., Am. J. Hum. Genet. 2004, 75, 338-345.
3. Semino, O., Magri, C., Benuzzi, G., Lin, A. A., et al., Am. J. Hum. Genet. 2004, 74, 1023-1034.
4. Brion, M., Quintans, B., Zarrabeitia, M., Gonzalez-Neira, A., et al., Gene 2004, 329, 17-25.
5. Gusmao, L., Brion, M., Gonzalez-Neira, A., Lareu, M., Carracedo, A., Leg. Med. 1999, 1, 55-60.
6. Jobling, M. A., Pandya, A., Tyler-Smith, C., Int. J. Legal Med. 1997, 110, 118-124.
7. Jobling, M. A., Forensic Sci. Int. 2001, 118, 158-162.
8. Pereira, L., Prata, M. J., Amorim, A., Forensic Sci. Int. 2002, 130, 147-155.
9. Sanchez, J., Borsting, C., Morling, N., Methods Mol. Biol. 2004, 297, 209-228.
10. Brion, M., Methods Mol. Biol. 2004, 297, 229-242.
11. Gill, P., Int. J. Legal Med. 2001, 114, 204-210.
12. Seielstad, M. T., Minch, E., Cavalli-Sforza, L. L., Nat. Genet. 1998, 20, 278-280.
13. Karafet, T. M., Zegura, S. L., Posukh, O., Osipova, L., et al., Am. J. Hum. Genet. 1999, 64(3), 817-831.
14. Y-Chromosome Consortium, Genome Res. 2002, 12, 339-348.
15. Jobling, M. A., Tyler-Smith, C., Nat. Rev. Genet. 2003, 4, 598-612.
16. Rootsi, S., Magri, C., Kivisild, T., Benuzzi, G., et al., Am. J. Hum. Genet. 2004, 75, 128-137.
17. Cinnioglu, C., King, R., Kivisild, T., Kalfoglu, E., et al., Hum. Genet. 2004, 114, 127-148.
18. Chen, X., Sullivan, P. F., Pharmacogenomics J. 2003, 3, 77-96.
19. Sobrino, B., Carracedo, A., Methods Mol. Biol. 2004, 297, 107-126.
20. Underhill, P. A., Shen, P., Lin, A. A., Jin, L., Passarino, G., et al., Nat. Genet. 2000, 26, 358-361.
21. Underhill, P. A., Passarino, G., Lin, A. A., Shen, P., et al., Ann. Hum. Genet. 2001, 65, 43-62.
22. Semino, O., Passarino, G., Oefner, P. J., Lin, A. A., et al., Science 2000, 290, 1155-1159.
23. Schneider, S., Roessli, D., Excoffier, L., Genetics and Biometry Laboratory, University of Geneva, Switzerland 2000.
24. Sanchez, J. J., Borsting, C., Hallenberg, C., Buchard, A., et al., Forensic Sci. Int. 2003, 137, 74-84.
25. Sanchez, J. J., Brion, M., Parson, W., Blanco-Verea, A. J., et al., Forensic Sci. Int. 2004, 140, 241-250.
26. Quintans, B., Alvarez-Iglesias, V., Salas, A., Phillips, C., et al., Forensic Sci. Int. 2004, 140, 251-257.
27. Mengel-Jørgensen, J., Sanchez, J. J., Børsting, C., Kirpekar, F., Morling, N., Anal. Chem. 2004, 76, 6039-6945.
28. Zerjal, T., Wells, R. S., Yuldasheva, N., Ruzibakiev, R., Tyler-Smith, C., Am. J. Hum. Genet. 2002, 71, 466-482.
29. Luis, J. R., Rowold, D. J., Regueiro, M., Caeiro, B., et al., Am. J. Hum. Genet. 2004, 74, 532-544.
30. Cruciani, F., La Fratta, R., Santolamazza, P., Sellitto, D., et al., Am. J. Hum. Genet. 2004, 74, 1014-1022.
31. Sanchez, J. J., Hallenberg, C., Borsting, C., Hernandez, A., Morling, N., Eur. J. Hum. Genet. 2005, 13, 856-866.
32. Bosch, E., Calafell, F., Rosser, Z. H., Norby, S., et al., Hum. Genet. 2003, 112, 353-363.
33. Phillips, C., Lareu, M., Salas, A., Fondevila, M., et al., Progr. in Forensic Genetics 10, Int. Congress Series 2004, 1261, 233-235.
34. Quintans, B., Alvarez-Iglesias, V., Salas, A., Phillips, C., Lareu, M. V., Carracedo, A., Forensic Sci. Int. 2004, 140, 251-357.
35. Karafet, T., Xu, L., Du, R., Wang, W., et al., Am. J. Hum. Genet. 2001, 69, 615-628.