Two poplar glycosyltransferase genes, PdGATL1.1 and PdGATL1.2, are functional orthologs to PARVUS/AtGATL1 in Arabidopsis

Molecular Plant

Volumn 2, Issue 5, 2009, Pages 1040-1050

  Kong, Yingzhen ^a   Zhou, Gongke ^a,c   Avci, Utku ^a   Gu, Xiaogang ^a   Jones, Chelsea ^a   Yin, Yanbin ^a,b   Xu, Ying ^a,b   Hahn, Michael G ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b Qingdao Institute of Bioenergy and Bioprocess Technology ^*  (United States)

^c QINGDAO INSTITUTE OF BIOENERGY AND BIOPROCESS TECHNOLOGY   (China)

Author keywords

Arabidopsis thaliana; Glycosyltransferase; Poplar; Xylan

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; POPULUS;

EID: 70349591050     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1093/mp/ssp068     Document Type: Article

References (50)

1. Andersson-Gunneras, S., Mellerowicz, E.J., Love, J., Segerman, B., Ohmiya, Y., Coutinho, P.M., Nilsson, P., Henrissat, B., Moritz, T., and Sundberg, B. (2006). Biosynthesis of cellulose-enriched tension wood in Populus: Global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. Plant J. 45, 144-165.
2. Aspeborg, H., et al. (2005). Carbohydrate-active enzymes involved in the secondary cell wall biogenesis in hybrid aspen. Plant Physiol. 137, 983-997.
3. Bevan, M.W., and Franssen, M.C.R. (2006). Investing in green and white biotech. Nature Biotechnology. 24, 765-767.
4. Brown, D.M., Goubet, F., Vicky, W.W., Goodacre, R., Stephens, E., Dupree, P., and Turner, S.R. (2007). Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis. Plant J. 52, 1154-1168.
5. Brown, D.M., Zhang, Z., Stephens, E., Dupree, P., and Turner, S.R. (2009). Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis. Plant J. 57, 732-746.
6. Brunner, A.M., Busov, V.B., and Strauss, S.H. (2004a). Poplar genome sequence: functional genomics in an ecologically dominant plant species. Trends Plant Sci. 9, 49-56.
7. Brunner, A.M., Yakovlev, I.A., and Strauss, S.H. (2004b). Validating internal controls for quantitative plant gene expression studies. BMC Plant Biol. 4, 14-20.
8. Cantarel, B.L., Coutinho, P.M., Rancurel, C., Bernard, T., Lombard, V., and Henrissat, B. (2009). The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics. Nucleic Acids Res. 37, D233-D238.
9. Chaffey, N., Cholewa, E., Regan, S., and Sundberg, B. (2002). Secondary xylem development in Arabidopsis: A model for wood formation. Physiol. Plant. 114, 594-600.
10. Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
11. Colley, K.J. (1997). Golgi localization of glycosyltransferases: More questions than answers. Glycobiology. 7, 1-13.
12. Ebringerová , A., Hromádková , Z., and Heinze, T. (2005). Hemicellulose. Advances in Polymer Science. 186, 1-67.
13. Force, A., Lynch, M., Pickett, F.B., Amores, A., Yan, Y.-I., and Postlethwait, J. (1999). Preservation of duplicate genes by complementary, degenerative mutations. Genetics. 151, 1531-1545.
14. Freshour, G., Clay, R.P., Fuller, M.S., Albersheim, P., Darvill, A.G., and Hahn, M.G. (1996). Developmental and tissue-specific structural alterations of the cell-wall polysaccharides of Arabidopsis thaliana roots. Plant Physiol. 110, 1413-1429.
15. Geisler-Lee, J.,etal. (2006).Poplarcarbohydrate-activeenzymes:gene identification and expressionanalyses. Plant Physiol. 140, 946-962.
16. Gregory, A.C.E., Smith, C., Kerry, M.E., Wheatley, E.R., and Bolwell, G.P. (2002). Comparative subcellular immunolocation of polypeptides associated with xylan and callose synthases in French bean (Phaseolus vulgaris) during secondary wall formation. Phytochemistry. 59, 249-259.
17. Guindon, S., and Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology. 52, 696-704.
18. Hanton, S.L., Matheson, L.A., Chatre, L., and Brandizzi, F. (2009). Dynamic organization of COPII coat proteins at endoplasmic reticulum export sites in plant cells. Plant J. 57, 963-974.
19. Hanton, S.L., Renna, L., Bortolotti, L.E., Chatre, L., Stefano, G., and Brandizzi, F. (2005). Diacidic motifs influence the export of transmembrane proteins from the endoplasmic reticulum in plant cells. Plant Cell. 17, 3081-3093.
20. He, Z.H., Cheeseman, I., He, D.Z., and Kohorn, B.D. (1999). A cluster of five cell wall-associated receptor kinase genes, Wak1-5, are expressed in specific organs of Arabidopsis. Plant Mol. Biol. 39, 1189-1196.
21. Johansen, L.K., and Carrington, J.C. (2001). Silencing on the spot: Induction and suppression of RNA silencing in the Agrobacterium-mediated transient expression system. Plant Physiol. 126, 930-938.
22. Katoh, K., Kuma, K., Toh, H., and Miyata, T. (2005). MAFFT version 5: Improvement in accuracy of multiple sequence alignment. Nucl. Acids Res. 33, 511-518.
23. Ko, J.-H., and Han, K.-H. (2004). Arabidopsis whole-transcriptome profiling defines the features of coordinated regulations that occur during secondary growth. Plant Mol. Biol. 55, 433-453.
24. Lao, N.T., Long, D., Kiang, S., Coupland, G., Shoue, D.A., Carpita, N.C., and Kavanagh, T.A. (2003). Mutation of a family 8 glycosyltransferase gene alters cell wall carbohydrate composition and causes a humidity-sensitive semi-sterile dwarf phenotype in Arabidopsis. Plant Mol. Biol. 53, 687-701.
25. Lee, C., Zhong, R., Richardson, E.A., Himmelsbach, D.S., McPhail, B.T., and Ye, Z.-H. (2007). The PARVUS gene is expressed in cells undergoing secondary wall thickening and is essential for glucuronoxylan biosynthesis. Plant Cell Physiol. 48, 1659-1672.
26. Livak, K.J., and Schmittgen, T.D. (2001). Analysis of relative gene expression data using real time quantitative PCR and the 2-nnC T method. Methods. 25, 402-408.
27. McCartney, L., Marcus, S.E., and Knox, J.P. (2005). Monoclonal antibodies to plant cell wall xylans and arabinoxylans. J. Histochem. Cytochem. 53, 543-546.
28. Mellerowicz, E.J., and Sundberg, B. (2008).Wood cell walls: Biosynthesis, developmental dynamics and their implications for wood properties. Curr. Opin. Plant Biol. 11, 293-300.
29. Mohnen, D. (2008). Pectin structure and biosynthesis. Curr. Opin. Plant Biol. 11, 266-277.
30. Munro, S. (1998). Localization of proteins to the Golgi apparatus. Trends Cell Biol. 8, 11-15.
31. Nelson, B.K., Cai, X., and Nebenführ, A. (2007). A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J. 51, 1126-1136.
32. Page, R.D.M.(2009).TREEVIEW:anapplicationtodisplayphylogenetic trees on personal computers. Comput. Appl. Biosci. 1996, 357-358.
33. Pattathil, S., Harper, A.D., and Bar-Peled, M. (2005). Biosynthesis of UDP-xylose: characterization of membrane-bound AtUxs2. Planta. 221, 538-548.
34. Peñ a, M.J., Zhong, R., Zhou, G.-K., Richardson, E.A., O'Neill, M.A., Darvill, A.G., York, W.S., and Ye, Z.-H. (2007). Arabidopsis irregular xylem8 and irregular xylem9: Implications for the complexity of glucuronoxylan biosynthesis. Plant Cell. 19, 549-563.
35. Persson, S., Caffall, K.H., Freshour, G., Hilley, M.T., Bauer, S., Poindexter, P., Hahn, M.G., Mohnen, D., and Somerville, C. (2007). The Arabidopsis irregular xylem8 mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity. Plant Cell. 19, 237-255.
36. Rajinikanth, M., Harding, S.A., and Tsai, C.-J. (2007). The glycine decarboxylase complex multienzyme family in Populus. J. Exp. Bot. 58, 1761-1770.
37. Renna, L., Hanton, S.L., Stefano, G., Bortolotti, L., Misra, V., and Brandizzi, F. (2005). Identification and characterization of AtCASP, a plant transmembrane Golgi matrix protein. Plant Mol. Biol. 58, 109-122.
38. Rojo, E., and Denecke, J. (2008). What is moving in the secretory pathway of plants? Plant Physiol. 147, 1493-1503.
39. Saint-Jore-Dupas, C., Nebenfuhr, A., Boulaflous, A., Follet- Gueye, M.L., Plasson, C., Hawes, C., Driouich, A., Faye, L., and Gomord, V. (2006). Plant N-glycan processing enzymes employ different targeting mechanisms for their spatial arrangement along the secretory pathway. Plant Cell. 18, 3182-3200.
40. Shao, M., Zheng, H., Hu, Y., Liu, D., Jang, J.-C., Ma, H., and Huang, H. (2004). The GAOLAOZHUANGREN1 gene encodes a putative glycosyltransferase that is critical for normal development and carbohydrate metabolism. Plant Cell Physiol. 45, 1453-1460.
41. Simson,B.W.,andTimell,T.E.(1978).Polysaccharides incambial tissues of Populus tremuloides and Tilia americana. III. Isolation and constitution of an arabinogalactan. Cellul. Chem. Technol. 12, 63-77.
42. Sparkes, I.A., Runions, J., Kearns, A., and Hawes, C. (2006). Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants. Nature Protocols. 1, 2019-2025.
43. Sterling, J.D., Atmodjo, M.A., Inwood, S.E., Kumar Kolli, V.S., Quigley, H.F., Hahn, M.G., and Mohnen, D. (2006). Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. Proc. Natl Acad. Sci. USA. 103, 5236-5241.
44. Suzuki, S., Li, L., Sun, Y.-H., and Chiang, V.L. (2006). The cellulose synthase gene superfamily and biochemical functions of xylemspecific cellulose synthase-like genes in Populus trichocarpa. Plant Physiol. 142, 1233-1245.
45. Turner, S., Gallois, P., and Brown, D. (2007). Tracheary element differentiation. Ann. Rev. Plant Biol. 58, 407-433.
46. Tuskan, G.A., et al. (2006). The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science. 313, 1596-1604.
47. Wu, A.-M., Rihouey, C., Seveno, M., Hörnblad, E., Singh, S.K., Matsunaga, T., Ishii, T., Lerouge, P., and Marchant, A. (2009). The Arabidopsis IRX10 and IRX10-LIKE glycosyltransferases are critical for glucuronoxylan biosynthesis during secondary cell wall formation. Plant J. 57, 718-731.
48. York, W.S., and O'Neill, M.A. (2008). Biochemical control of xylan biosynthesis: which end is up? Curr. Opin. Plant Biol. 11, 258-265.
49. Zhong, R., Peñ a, M.J., Zhou, G.-K., Nairn, C.J., Wood-Jones, A., Richardson, E.A., Morrison, W.H.III, Darvill, A.G., York, W.S., and Ye, Z.-H. (2005). Arabidopsis Fragile Fiber8, which encodes a putative glucuronyltransferase, is essential for normal secondary wall synthesis. Plant Cell. 17, 3390-3408.
50. Zhou,G.-K., Zhong, R., Himmelsbach,D.S.,McPhail, B.T., and Ye, Z.-H. (2007). Molecular characterization of PoGT8D and PoGT43B, two secondarywall-associated glycosyltransferases in poplar. Plant Cell Physiol. 48, 689-699.