Unraveling evolutionary relationships among the divergent lineages of Colletotrichum causing anthracnose disease in turfgrass and corn

Phytopathology

Volumn 96, Issue 1, 2006, Pages 46-60

  Crouch, Jo Anne ^a   Clarke, Bruce B ^a   Hillman, Bradley I ^a  

^a RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANDROPOGON GERARDII; AVENA FATUA; COLLETOTRICHUM; COLLETOTRICHUM CAUDATUM; COLLETOTRICHUM SUBLINEOLUM; POACEAE; POOIDEAE; SACCHARUM HYBRID CULTIVAR; SORGHASTRUM; TRITICUM AESTIVUM; ZEA MAYS;

EID: 29744460507     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-96-0046     Document Type: Article

References (73)

1. Akaike, H. 1974. A new look at the statistical model identification. IEEE Trans. Automatic Control 19:716-723.
2. Ali, M. M. 1962. Factors influencing pathogenicity of three isolates of Colletotrichum graminicola on wheat. Mycopath. Mycol. Appl. XIX:161-166.
3. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
4. Arie, T., Christiansen, S. K., Yoder, O. C., and Turgeon, B. G. 1997. Efficient cloning of ascomycete mating genes by PCR amplification of the conserved MAT HMG box. Fungal Genet. Biol. 21:118-130.
5. Arx, J. A. v. 1957. Die arten der gattung Colletotrichum Cda. Phytopathol. Z. 29:413-468.
6. Backman, P. A., Landershoot, P. J., and Huff, D. R. 1999. Variation in pathogenicity, morphology, and RAPD marker profiles in Collelotrichum graminicola from turfgrasses. Crop Sci. 39:1129-1135.
7. Balardin, R. S., Smith, J. J., and Kelly, J. D. 1999. Ribosomal DNA polymorphism in Colletotrichum lindemuthianum. Mycol. Res. 103:841-848.
8. Bandelt, H. J., and Dress, A. W. 1992. Split decomposition: A new and useful approach to phylogenetic analyses of distance data. Mol. Phylogenet. Evol. 1:242-252.
9. Barker, F. K., and Lutzoni, F. M. 2002. The utility of the incongruence length difference test. Syst. Biol. 51:625-637.
10. Baxter, A. P., van der Westhuizen, G. C. A., and Eicker, A. 1983. Morphology and taxonomy of South African isolates of Colletotrichum. South African J. Bot. 2:259-270.
11. Brasier, C. M. 2001. Rapid evolution of introduced plant pathogens via interspecific hybridization. BioScience 51:123-133.
12. Browning, M., Rowley, L. V., Zeng, P., Chandlee, J. M., and Jackson, N. 1999. Morphological, pathogenic, and genetic comparisons of Colletotrichum graminicola isolates from Poaceae. Plant Dis. 83:286-292.
13. Cannon, P. F., Bridge, P. D., and Monte, E. 2000. Linking the past, present, and future of Colletotrichum systematics. Pages 1-20 in: Colletotrichum: Host Specificity, Pathology, and Host-Pathogen Interaction. D. Prusky, S. Freeman, and M. B. Dickman, eds. The American Phytopathological Society, St. Paul, MN.
14. Carbone, I., and Kohn, L. M. 2004. Inferring process from pattern in fungal population genetics. Pages 1-30 in: Fungal Genomics, Applied Mycology and Biotechnology Series. D. K. Arora and G. G. Khachatourians, eds. Elsevier Science, Burlington, MA.
15. Cesati, V. 1852. Klotzsch, herbarium vivum mycologicum, sistens fungorum per totam Germanium cresentium collection perfectam. Cent. XVII. Flora 35:398.
16. Chen, F., Goodwin, P. H., Khan, A., and Hsiang, T. 2002. Population structure and mating-type genes of Colletotrichum graminicola from Agrostis palustris. Can. J. Microbiol. 48:427-436.
17. Couch, B. C., Fudal, I., Lebrun, M.-H., Tharreau, D., Valent, B., Kim, P., Notteghem, J.-L., and Kohn, L. M. 2005. Origins of host-specific populations of the rice blast pathogen. Magnaporthe oryzae, in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics 170:613-630.
18. Couch, H. B. 1979. Is it anthracnose or is it wilt? The Greensmaster 15:3-6.
19. Crouch, J., Clarke, B. B., and Hillman, B. I. 2005. Phylogenetic relationships and fungicide sensitivities of Colletotrichum graminicola isolates from turfgrass in North America. Int. Turfgrass Soc. Res. 10:186-195.
20. Dale, J. L. 1963. Corn anthracnose. Plant Dis. Rep. 47:245-249.
21. Darlu, P., and Lecointre, G. 2002. When does the incongruence length difference test fail? Mol. Biol. Evol. 19:432-437.
22. Dernoeden, P. H. 2000. Stresses and maladies of creeping bentgrass. Pages 44-48 in: Creeping Bentgrass Management: Summer Stresses, Weeds and Selected Maladies. Ann Arbor Press, Chelsea, MI.
23. Dolphin, K., Belshaw, R., Orme, C. D. L., and Quicke, D. L. J. 2000. Noise and incongruence: Interpreting results of the incongruence length difference test. Mol. Phylogenet. Evol. 17:401-406.
24. Dowton, M., and Austin, A. D. 2002. Increased congruence does not necessarily indicate increased phylogenetic accuracy - the behavior of the incongruence length difference test in mixed-model analysis. Syst. Biol. 51:19-31.
25. Du, M., Schardl, C. L., Nuckles, E. M., and Vaillancourt, L. 2005. Using mating-type gene sequences for improved phylogenetic resolution of Colletotrichum species complexes. Mycologia 97:641-658.
26. Fang, G. C., Hanau, R. M., and Vaillancourt, L. J. 2002. The SOD2 gene, encoding a manganese-type superoxide dismutase, is up-regulated during conidiogenesis in the plant-pathogenic fungus Colletotrichum graminicola. Fungal Genet. Biol. 36:155-165.
27. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
28. Freeman, S. 2000. Genetic diversity and host specificity of Colletotrichum species on various fruits. Pages 131-144 in: Colletotrichum: Host Specificity, Pathology, and Host-Pathogen Interaction. D. Prusky, S. Freeman, and M. B. Dickman, eds. The American Phytopathological Society, St. Paul, MN.
29. Hey, J., and Wakeley, J. 1997. A coalescent estimator of the population recombination rate. Genetics 145:833-846.
30. Horvath, B. J., and Vargas, J. M. 2004. Genetic variation among Colletotrichum graminicola isolates from four hosts using isozyme analysis. Plant Dis. 88:402-406.
31. Hsiang, T., and Goodwin, P. H. 2001. Ribosomal DNA sequence comparisons of Colletotrichum graminicola from turfgrasses and other hosts. Eur. J. Plant Pathol. 107:593-599.
32. Hudson, R. R., and Kaplan, N. L. 1985. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111:147-164.
33. Huelsenbeck, J. P., and Rannala, B. 2004. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitutional models. Syst. Biol. 53:904-913.
34. Huelsenbeck, J. P., and Ronquist, F. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
35. Huson, D. H. 1998. SplitsTree: Analyzing and visualizing evolutionary data. Bioinformatics 14:68-73.
36. Jamil, F. F., and Nicholson, R. L. 1987. Susceptibility of corn to isolates of Colletotrichum graminicola pathogenic to other grasses. Plant Dis. 71:809-810.
37. Johnston, P. R., and Jones, D. 1997. Relationships among Colletotrichum isolates from fruit-rots assessed using rDNA sequences. Mycologia 89:420-430.
38. Kemp, G. H. J., Pretorius, Z. A., and Smith, J. 1991. Anthracnose of wheat in South Africa. Phytophylactia 23:177-179.
39. Larget, B., and Simon, D. L. 1999. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol. Biol. Evol. 16:750-759.
40. LeBeau, F. J. 1950. Pathogenicity studies with Colletotrichum from different hosts on sorghum and sugarcane. Phytopathology 40:430-438.
41. LeBeau, F. J., Stokes, I. E., and Coleman, O. H. 1951. Anthracnose and red rot of sorghum. Vol. 1035. U.S. Dep. Agric., Washington, D.C.
42. Liyanage, H. D., McMillan, R. T., and Kistler, H. C. 1992. Two genetically distinct populations of Colletotrichum gloeosporioides from citrus. Phytopathology 82:1371-1376.
43. Messiaen, C. M., Lafon, R., and Malot, O. 1959. Necroses de racines, pourritures de tiges et verse parasitaire du Mais. Ann. Epiphyt. Ser. C. 10:441-474.
44. Minussi, E., and Kimati, H. 1979. Taxonomy of Colletotrichum graminicola (Ces.) Wils. (sensu Arx, 1957). Rev. Centro Cienas Rurais 9:171-187.
45. Moriwaki, J., Tsukiboshi, T., and Sato, T. 2002. Grouping of Colletotrichum species in Japan based on rDNA sequences. J. Gen. Plant Pathol. 68:307-320.
46. O'Donnell, K., and Cigelnik, E. 1997. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol. Phylogenet. Evol. 7:103-116.
47. Posada, D., and Crandall, K. A. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818.
48. Posada, D., and Crandall, K. A. 2001. Intraspecific gene genealogies: Trees grafting into networks. Trends Ecol. Evol. 16:37-45.
49. Posada, D., and Crandall, K. A. 2002. The effect of recombination on the accuracy of phylogeny estimation. J. Mol. Evol. 54:396-402.
50. Posada, D., Crandall, K. A., and Holmes, E. C. 2002. Recombination in evolutionary genomics. Annu. Rev. Genet. 36:75-97.
51. Price, E. W., and Carbone, I. 2005. SNAP: Workbench management tool for evolutionary population genetic analysis. Bioinformatics 21:402-404.
52. Randhir, R. J., and Hanau, R. M. 1997. Size and complexity of the nuclear genome of Colletotrichum graminicola. Appl. Environ. Microbiol. 63:4001-4004.
53. Rozas, J., Sanchez-DelBarrio, J. C., Messeguel, X., and Rozas, R. 2003. DnaSP, DNA sequence polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497.
54. Selby, A. D., and Manns, T. F. 1909. Studies in diseases of cereals and grasses. Ohio Agric. Exp. Stn. Bull. 203:207.
55. Sherriff, C., Whelan, M. J., Arnold, G. M., and Bailey, J. A. 1995. rDNA sequence analysis confirms the distinction between Colletotrichum graminicola and C. sublineolum. Mycol. Res. 99:475-478.
56. Sreenivasaprasad, S., Mills, P. R., Meehan, B. M., and Brown, A. E. 1996. Phylogeny and systematics of 18 Colletotrichum species based on ribosomal DNA spacer sequences. Genome 39:499-512.
57. Sullivan, J. 1996. Combining data with different distributions of among-site rate variation. Syst. Biol. 45:375-380.
58. Sutton, B. C. 1965. Studies on the taxonomy of Colletotrichum Cda with especial reference to C. graminicola (Ces.) Wilson. University of London, London.
59. Sutton, B. C. 1966. Development of fruitifications in Colletotrichum graminicola (Ces.) Wils. and related species. Can. J. Bot. 44:887-897.
60. Sutton, B. C. 1968. The appressoria of Colletotrichum graminicola and C. falcatum. Can. J. Bot. 46:873-876.
61. Sutton, B. C. 1980. The coelomycetes: Fungi imperfecti with pycnidia, acervuli, and stromata. Commonwealth Mycological Institute, Kew, UK.
62. Sutton, B. C. 1992. The genus Glomerella and its anamorph Colletotrichum. Pages 1-26 in: Colletotrichum: Biology, Pathology and Control. J. A. Bailey and M. J. Jeger, eds. CAB International, Wallingford, UK.
63. Swofford, D. L. 2000. PAUP*: Phylogenetic analysis using parsimony (*and other methods). Sinauer Associates, Sunderland, MA.
64. Taylor, J. W., Jacobson, D. J., Kroken, S., Kasuga, T., Geiser, D. M., Hibbett, D. S., and Fisher, M. C. 2000. Phylogenetic species recognition and species concepts in fungi. Fungal Genet. Biol. 31:21-32.
65. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and matrix choice. Nucleic Acids Res. 22:4673-4680.
66. Vaillancourt, L., Du, M., Wang, J., Rollins, J., and Hanau, R. 2000. Genetic analysis of cross fertility between two self-sterile strains of Glomerella graminicola. Mycologia 92:430-435.
67. Vaillancourt, L. J., and Hanau, R. M. 1991. A method for genetic analysis of Glomerella graminicola (Colletotrichum graminicola) from maize. Phytopathology 81:530-534.
68. Vaillancourt, L. J., and Hanau, R. M. 1992. Genetic and morphological comparisons of Glomerella (Colletotrichum) isolates from maize and sorghum. Exp. Mycol. 16:219-229.
69. Valero, H. M., Resende, M. A., Weikert-Oliveira, R. C. B., and Casela, C. R. 2005. Virulence and molecular diversity in Colletotrichum graminicola from Brazil. Mycopathologia 159:449-459.
70. White, T. J., Bruns, T., Lee, S., and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pages 315-322 in: PCR Protocols: A Guide to Methods and Applications. M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White, eds. Academic Press, San Diego.
71. Wilson, G. W. 1914. The identity of the anthracnose of grasses in the United States. Phytopathology 4:106-112.
72. Zeiders, K. E. 1987. Leaf spot of Indiangrass caused by Colletotrichum caudatum. Plant Dis. 71:348-350.
73. Zwillenberg, H. H. L. 1959. Colletotrichum graminicola (Ces.) Wilson auf mais und verschiedenen anderen Pflanzen. Phytopathol. Z. 34:417-425.