Resolving maternal relationships in the clubmoss genus Diphasiastrum (Lycopodiaceae)

Taxon

Volumn 58, Issue 3, 2009, Pages 835-848

  Aagaard, Sunniva M D ^a   Vogel, Johannes C ^b   Wikström, Niklas ^a  

^a UPPSALA UNIVERSITY   (Sweden)

^b DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

Chloroplast microsatellites; Diphasiastrum; Diploid hybrid species; Lycopodiaceae; Lycopodium; Plastid phylogeny

Indexed keywords

CHLOROPLAST; GENE EXPRESSION; INTERSPECIFIC VARIATION; MATERNAL EFFECT; PHYLOGENETICS; PLASMID; POLYMORPHISM; POPULATION DISTRIBUTION; SPECIES DIVERSITY; SYMPATRY; VASCULAR PLANT;

EURASIA; EUROPE;

DIPHASIASTRUM; LYCOPODIACEAE; LYCOPODIUM;

EID: 70349551397     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.1002/tax.583012     Document Type: Article

References (56)

1. Alfaro, M.E., Zoller, S. & Lutzoni, F. 2003. Bayes or boot-strap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and boot-strapping in assessing phylogenetic confidence. Molec. Biol. Evol. 20: 255-266.
2. Arnold, M.L. 1997. Natural Hybridization and Evolution. Oxford University Press, New York.
3. Birky, C.W., Jr. 2001. The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms and models. Annual Rev. Genet. 35: 125-148.
4. Brochmann, C., Borgen, L. & Stabbetorp, O.E. 2000. Multiple diploid hybrid speciation of the Canary Island endemic Argyranthemum sundingii (Asteraceae). Pl. Syst. Evol. 220: 77-92.
5. Dostál, J. 1984. Klasse Lycopsida Bärlapp-Ähnliche. Pp. 16-42 in: Kramer, K.U. (ed.), Illustrierte Flora von Mitteleuropa, Band 1, Teil 1, Pteridophyta. Parey, Berlin.
6. Doyle, J.J., Doyle, J.L., Rauscher, J.T. & Brown, A.H.D. 2003. Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine). New Phytol. 161: 121-132.
7. Frey, W., Frahm, J.-P., Lobin, W. & Fischer, E. 2006.Liverworts, Mosses and Ferns of Europe. Harley Books, Colchester.
8. Gompert, Z., Fordyce, J.A., Forister, M.L., Shapiro, A.M. & Nice, C.C. 2006. Homoploid hybrid speciation in an extreme habitat. Science 314: 1923-1925.
9. Hagemann, R. 2004. The sexual inheritance of plant organelles. Pp. 93-113 in: Daniell, H. & Chase, C.D. (eds.), Molecular Biology and Biotechnology of Plant Organelles. Kluwer Academic Publishers, Dordrecht.
10. Haines, A. 2003. The Families Huperziaceae and Lycopodiaceae of New England. A Taxonomic and Ecological Reference. V.F. Thomas Co., Bowdoin.
11. Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids. Symp. Ser. 41: 95-98.
12. Hegarty, M.J. & Hiscock, S.J. 2005. Hybrid speciation in plants: new insights from molecular studies. New Phytol. 165: 411-423.
13. Holub, J. 1975. Diphasiastrum, a new genus in Lycopodiaceae. Preslia 47: 97-110.
14. Holub, J. & Procházka, F. 2000. Red list of vascular plants of the Czech Republic. Preslia 72: 187-230.
15. Horn, K. & Bennert, H.W. 2002. Diphasiastrum oellgaardii Stoor & al. (Lycopodiaceae, Pteridophyta), eine neue Flachbärlapp-Art fur die Flora von Österreich. Phyton (Horn) 42: 123-148.
16. Horn, K., Strobel, C. & Bennert, H.W. 2001. Bestandssituation gefährdeter Farnpflanzen (Pteridophyta) in Bayern ein erster Bericht über Planung und Durchführung von Schutzund Pflegemaβnahmen. Bayerisches Landesamt für Umweltschutz, Schriftenreihe 156: 139-174.
17. Huelsenbeck, J.P. & Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
18. Issler, E. 1910. Über 3 in den Vogesen vorkommende Lycopod ien-Formen aus der complanatum-Gruppe. Mitt. Philom. Ges. Elsass-Lothringen 4: 438-442.
19. Kronforst, M.R., Young, L.G., Blume, L.M. & Gilbert, L.E. 2006. Multilocus analyses of admixture and introgression among hybridizing Heliconius butterflies. Evolution 60: 1254-1268.
20. Larget, B. & Simon, D.L. 1999. Markov Chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Molec. Biol. Evol. 16: 750-759.
21. Lawalrée, A. 1957. Un Lycopode ardennais méconnu, Lycopodium issleri. Bull. Soc. Roy. Bot. Belgique 90: 109-120.
22. Lewis, P. 2001. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 51: 913-925.
23. Linder, C.R. & Rieseberg, L.H. 2004. Reconstructing patterns of reticulate evolution in plants. Amer. J. Bot. 91: 1700-1708.
24. Mavárez, J., Salazar, C.A., Bermingham, E., Salcedo, C. & Jiggins, C.D. 2006. Speciation by hybridization in Heliconius butterflies. Nature 441: 868-871.
25. Nagalingum, N.S., Schneider, H. & Pryer, K.M. 2007. Molecular phylogenetic relationships and morphological evolution in the heterosporous fern genus Marsilea. Syst. Bot. 32: 16-25.
26. Nakhleh, L., Warnow, T. & Linder, C.R. 2004. Reconstructing reticulate evolution in species: theory and practice. Pp. 337-346 in: Bourne, P.E. & Gusfield, D. (eds.), Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology, 2004, San Diego, California, USA, March 27-31, 2004. Association for Computing Machinery, New York.
27. Ninan, C.A. 1958. Studies on the cytology and phylogeny of the Pteridophytes II. Observations on the genus Lycopodium. Proc. Natl. Inst. Sci. India 24: 54-66.
28. Nylander, J.A.A. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
29. Ohyama, K., Fukuzawa, H., Kohchi, T., Shirai, H., Sano, T., Sano, S., Umesono, K., Shiki, Y., Takeuchi, M., Chang, Z., Aota, S., Inokuchi, H. & Ozeki, H. 1986. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322: 572-574.
30. Øllgaard, B. 1987. A revised classification of the Lycopodiaceae s. lat. Opera Bot. 92: 153-178.
31. Page, C.N. 2002. Ecological strategies in fern evolution: a neopteridological overview. Rev. Palaeontol. Palynol. 2428: 1-33.
32. Raubeson, L.A. & Jansen, R.K. 2005. Chloroplast genomes of plants. Pp. 45-68 in: Henry, R.J. (ed.), Plant Diversity and Evolution: Genotypic and Phenotypic Variation in Higher Plants. CABI Publishing, Wallingford.
33. Rieseberg, L.H. 1997. Hybrid origins of plant species. Annual Rev. Ecol. Syst. 28: 359-389.
34. Rieseberg, L.H. & Soltis, D.E. 1991. Phylogenetic consequences of cytoplasmic gene flow in plants. Evol. Trends Pl. 15: 65-84.
35. Rieseberg, L.H. & Willis, J.H. 2007. Plant speciation. Science 317: 910-914.
36. Schwarzbach, A.E. & Rieseberg, L.H. 2002. Likely multiple origins of a diploid hybrid sunflower species. Molec. Ecol. 11: 1703-1715.
37. Simmons, M.P. & Ochoterena, H. 2000. Gaps as characters Aagaard & al. • Maternal relationships in Diphasiastrum in sequence-based phylogenetic analyses. Syst. Biol. 49: 369-381.
38. Soltis, P.S. & Soltis, D.E. 1988. Estimated rates of intragametophytic selfing in Lycopods. Amer. J. Bot. 75: 248-256.
39. Staden, R. 1996. The Staden Sequence Analysis Package. Molec. Biotechnol. 5: 233-241.
40. Stoor, A.M., Boudrie, M., Jérôme, C., Horn, K. & Bennert, H.W. 1996. Diphasiastrum oellgaardii (Lycopodiaceae, Pteridophyta), a new lycopod species from Central Europe and France. Feddes Repert. 107: 149-157.
41. Swofford, D.L. 2002. PAUP Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0b10. Sinauer, Sunderland.
42. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
43. Tsai, J.-L. & Shieh, W.-C. 1983. A cytotaxonomic survey of the pteridophytes in Taiwan. J. Sci. Engin. 20: 137-159.
44. Victorin, F.M. 1925. Les Lycopodinées du Quebec et leurs formes mineures. Contrib. Lab. Bot. Univ. Montreal 3: 1-117.
45. Vogel, J.C. & Rumsey, F.J. 1999. On the status of Diphasiastrum oellgaardii (Lycopodiaceae, Pteridophyta). Feddes Repert. 110: 439-445.
46. Vogel, J.C., Russel, S.J., Rumsey, F.J., Barrett, J.A. & Gibby, M. 1998. Evidence for maternal transmission of chloroplast DNA in the genus Asplenium (Aspleni aceae, Pteridophyta) Bot. Acta 111: 247-249.
47. Wagner, F.S.1992. Cytological problems in Lycopodium sens. lat. Ann. Missouri Bot. Gard. 79: 718-729.
48. Wagner, W.H. & Beitel, J.M. 1993. Lycopodiaceae. Pp. 18-37 in: Flora of North America Editorial Committee (eds.), Flora of North America: North of Mexico, vol. 2, Pteridophytes and Gymnosperms. Oxford University Press, Oxford.
49. Whittier, D.P. 1977. Gametophytes of Lycopodium obscurum as grown in axenic culture. Canad. J. Bot. 55: 563-567.
50. Wikström, N. & Kenrick, P. 1997. Phylogeny of Lycopodiaceae (Lycopsida) and the relationship of Phylloglossum drummondii Kunze based on rbcL sequence data. Int. J. Pl. Sci. 158: 862-871.
51. Wikström, N. & Kenrick, P. 2000. Relationships of Lycopodium and Lycopodiella based on combined plastid rbcL Gene and trnL intron sequence data. Syst. Bot. 25: 495-510.
52. Wikström, N. 2001. Diversification and relationships of extant homosporous Ly copods. Amer. Fern J. 91: 150-165.
53. Wilce, J.H. 1961. Lycopodium complanatum L. and four new allied species of the Old World. Nova Hedwigia. 3: 93-117.
54. Wilce, J.H. 1965. Section Complanata of the genus Lycopodium. Beih. Nova Hedwigia 19: 1-233.
55. Wolf, P.G., Karol, K.G., Mandoli, D.F., Kuehl, J. & Arumuganathan, K. 2005. The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae). Gene 350: 117-128.
56. Wolf, P.G., Rowe, C.A., Sinclair, R.B. & Hasebe, M. 2003. Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L. DNA Res. 10: 59-65.