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Volumn 4, Issue 9, 2009, Pages

Complete genome sequence of francisella tularensis subspecies holarctica FTNF002-00

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; BACTERIAL STRAIN; BACTERIAL VIRULENCE; CONTROLLED STUDY; FRANCISELLA TULARENSIS; FRANCISELLA TULARENSIS HOLARTICA; GENE DELETION; GENE IDENTIFICATION; GENE INSERTION; GENE LOCUS; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PSEUDOGENE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; BACTERIAL GENE; BACTERIAL GENOME; BIOLOGICAL MODEL; CHROMOSOME MAP; DNA SEQUENCE; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MALE; MICROBIOLOGY; MIDDLE AGED; MOLECULAR GENETICS; MUTATION; SINGLE NUCLEOTIDE POLYMORPHISM; TULAREMIA; VIRULENCE;

EID: 70349506110     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0007041     Document Type: Article
Times cited : (34)

References (43)
  • 1
    • 0002373436 scopus 로고
    • Further observations on a plague-like disease of rodents with a preliminary note on the causative agent, Bacterium tularense
    • McCoy GW, Chapin CW (1912) Further observations on a plague-like disease of rodents with a preliminary note on the causative agent, Bacterium tularense. J Infect Dis 10: 61-72.
    • (1912) J Infect Dis , vol.10 , pp. 61-72
    • McCoy, G.W.1    Chapin, C.W.2
  • 2
    • 0002739687 scopus 로고
    • Beran GW, ed. Boca Raton, FL: CRC Press. pp
    • Hopla CE, Hopla AK (1994) Tularemia; Beran GW, ed. Boca Raton, FL: CRC Press. pp 113-126.
    • (1994) Tularemia , pp. 113-126
    • Hopla, C.E.1    Hopla, A.K.2
  • 3
    • 4344699881 scopus 로고    scopus 로고
    • Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis
    • Johansson A, Farlow J, Larsson P, Dukerich M, Chambers E, et al. (2004) Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis. J Bacteriol 186: 5808-5818.
    • (2004) J Bacteriol , vol.186 , pp. 5808-5818
    • Johansson, A.1    Farlow, J.2    Larsson, P.3    Dukerich, M.4    Chambers, E.5
  • 4
    • 70349514254 scopus 로고    scopus 로고
    • Evans ME, Friedlander AM (1997) Chapter 24: Tularemia. In: Zajtchuk R, Belamy R, eds (1997) Text Book of Military Medicine Part I: Medical Aspects of Chemical and Biological Warfare. Washington, D.C.: Office of the Surgeon General. pp 10.
    • Evans ME, Friedlander AM (1997) Chapter 24: Tularemia. In: Zajtchuk R, Belamy R, eds (1997) Text Book of Military Medicine Part I: Medical Aspects of Chemical and Biological Warfare. Washington, D.C.: Office of the Surgeon General. pp 10.
  • 5
    • 34748915252 scopus 로고    scopus 로고
    • Molecular epidemiology, evolution, and ecology of Francisella
    • Keim P, Johansson A, Wagner DM (2007) Molecular epidemiology, evolution, and ecology of Francisella. Ann N Y Acad Sci 1105: 30-66.
    • (2007) Ann N Y Acad Sci , vol.1105 , pp. 30-66
    • Keim, P.1    Johansson, A.2    Wagner, D.M.3
  • 9
    • 0037830766 scopus 로고    scopus 로고
    • Genome-wide DNA microarray analysis of Francisella tularensis strains demonstrates extensive genetic conservation within the species but identifies regions that are unique to the highly virulent F. tularensis subsp. tularensis
    • Broekhuijsen M, Larsson P, Johansson A, Bystrom M, Eriksson U, et al. (2003) Genome-wide DNA microarray analysis of Francisella tularensis strains demonstrates extensive genetic conservation within the species but identifies regions that are unique to the highly virulent F. tularensis subsp. tularensis. J Clin Microbiol 41: 2924-2931.
    • (2003) J Clin Microbiol , vol.41 , pp. 2924-2931
    • Broekhuijsen, M.1    Larsson, P.2    Johansson, A.3    Bystrom, M.4    Eriksson, U.5
  • 10
    • 3242742163 scopus 로고    scopus 로고
    • Genome diversity among regional populations of Francisella tularensis subspecies tularensis and Francisella tularensis subspecies holarctica isolated from the US
    • Samrakandi MM, Zhang C, Zhang M, Nietfeldt J, Kim J, et al. (2004) Genome diversity among regional populations of Francisella tularensis subspecies tularensis and Francisella tularensis subspecies holarctica isolated from the US. FEMS Microbiol Lett 237: 9-17.
    • (2004) FEMS Microbiol Lett , vol.237 , pp. 9-17
    • Samrakandi, M.M.1    Zhang, C.2    Zhang, M.3    Nietfeldt, J.4    Kim, J.5
  • 11
    • 4544341163 scopus 로고    scopus 로고
    • A Francisella tularensis pathogenicity island required for intramacrophage growth
    • Nano FE, Zhang N, Cowley SC, Klose KE, Cheung KK, et al. (2004) A Francisella tularensis pathogenicity island required for intramacrophage growth. J Bacteriol 186: 6430-6436.
    • (2004) J Bacteriol , vol.186 , pp. 6430-6436
    • Nano, F.E.1    Zhang, N.2    Cowley, S.C.3    Klose, K.E.4    Cheung, K.K.5
  • 12
    • 33748635796 scopus 로고    scopus 로고
    • Paired-end sequence mapping detects extensive genomic rearrangement and translocation during divergence of Francisella tularensis subsp. tularensis and Francisella tularensis subsp. holarctica populations
    • Dempsey MP, Nietfeldt J, Ravel J, Hinrichs S, Crawford R, et al. (2006) Paired-end sequence mapping detects extensive genomic rearrangement and translocation during divergence of Francisella tularensis subsp. tularensis and Francisella tularensis subsp. holarctica populations. J Bacteriol 188: 5904-5914.
    • (2006) J Bacteriol , vol.188 , pp. 5904-5914
    • Dempsey, M.P.1    Nietfeldt, J.2    Ravel, J.3    Hinrichs, S.4    Crawford, R.5
  • 13
    • 33749347870 scopus 로고    scopus 로고
    • Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence
    • Petrosino JF, Xiang Q, Karpathy SE, Jiang H, Yerrapragada S, et al. (2006) Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence. J Bacteriol 188: 6977-6985.
    • (2006) J Bacteriol , vol.188 , pp. 6977-6985
    • Petrosino, J.F.1    Xiang, Q.2    Karpathy, S.E.3    Jiang, H.4    Yerrapragada, S.5
  • 14
    • 19144367450 scopus 로고    scopus 로고
    • Tularemia: Emergence/re-emergence
    • Petersen JM, Schriefer ME (2005) Tularemia: emergence/re-emergence. Vet Res 36: 455-467.
    • (2005) Vet Res , vol.36 , pp. 455-467
    • Petersen, J.M.1    Schriefer, M.E.2
  • 16
    • 36649033866 scopus 로고    scopus 로고
    • Genomic deletion marking an emerging subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula
    • Dempsey MP, Dobson M, Zhang C, Zhang M, Lion C, et al. (2007) Genomic deletion marking an emerging subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula. Appl Environ Microbiol 73: 7465-7470.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7465-7470
    • Dempsey, M.P.1    Dobson, M.2    Zhang, C.3    Zhang, M.4    Lion, C.5
  • 23
    • 0036701971 scopus 로고    scopus 로고
    • Genotyping of Francisella tularensis strains by pulsed-field gel electrophoresis, amplified fragment length polymorphism fingerprinting, and 16S rRNA gene sequencing
    • Garcia Del Blanco N, Dobson ME, Vela AI, De La Puente VA, Gutierrez CB, et al. (2002) Genotyping of Francisella tularensis strains by pulsed-field gel electrophoresis, amplified fragment length polymorphism fingerprinting, and 16S rRNA gene sequencing. J Clin Microbiol 40: 2964-2972.
    • (2002) J Clin Microbiol , vol.40 , pp. 2964-2972
    • Garcia Del Blanco, N.1    Dobson, M.E.2    Vela, A.I.3    De La Puente, V.A.4    Gutierrez, C.B.5
  • 26
    • 55649097079 scopus 로고    scopus 로고
    • Puiu D, Salzberg SL (2008) Re-assembly of the genome of Francisella tularensis subsp. holarctica OSU18. PLoS ONE 3: e3427.
    • Puiu D, Salzberg SL (2008) Re-assembly of the genome of Francisella tularensis subsp. holarctica OSU18. PLoS ONE 3: e3427.
  • 27
    • 0035448545 scopus 로고    scopus 로고
    • The evolution of mycobacterial pathogenicity: Clues from comparative genomics
    • Brosch R, Pym AS, Gordon SV, Cole ST (2001) The evolution of mycobacterial pathogenicity: clues from comparative genomics. Trends Microbiol 9: 452-458.
    • (2001) Trends Microbiol , vol.9 , pp. 452-458
    • Brosch, R.1    Pym, A.S.2    Gordon, S.V.3    Cole, S.T.4
  • 28
    • 4644293305 scopus 로고    scopus 로고
    • Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis
    • Chain PS, Carniel E, Larimer FW, Lamerdin J, Stoutland PO, et al. (2004) Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 101: 13826-13831.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 13826-13831
    • Chain, P.S.1    Carniel, E.2    Larimer, F.W.3    Lamerdin, J.4    Stoutland, P.O.5
  • 29
    • 0034117339 scopus 로고    scopus 로고
    • Characterization of heat-inducible expression and cloning of HtpG (Hsp90 homologue) of Porphyromonas gingivalis
    • Lopatin DE, Combs A, Sweier DG, Fenno JC, Dhamija S (2000) Characterization of heat-inducible expression and cloning of HtpG (Hsp90 homologue) of Porphyromonas gingivalis. Infect Immun 68: 1980-1987.
    • (2000) Infect Immun , vol.68 , pp. 1980-1987
    • Lopatin, D.E.1    Combs, A.2    Sweier, D.G.3    Fenno, J.C.4    Dhamija, S.5
  • 30
    • 34347270217 scopus 로고    scopus 로고
    • In vivo negative selection screen identifies genes required for Francisella virulence
    • Weiss DS, Brotcke A, Henry T, Margolis JJ, Chan K, et al. (2007) In vivo negative selection screen identifies genes required for Francisella virulence. Proc Natl Acad Sci U S A 104: 6037-6042.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 6037-6042
    • Weiss, D.S.1    Brotcke, A.2    Henry, T.3    Margolis, J.J.4    Chan, K.5
  • 31
    • 70349486389 scopus 로고    scopus 로고
    • Wilson K (1997) Preparation of Genomic DNA from Bacteria. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, et al. (1997) Current Protocols in Molecular Biology: John Wiley & Sons. pp 2.4.1-2.4.5.
    • Wilson K (1997) Preparation of Genomic DNA from Bacteria. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, et al. (1997) Current Protocols in Molecular Biology: John Wiley & Sons. pp 2.4.1-2.4.5.
  • 34
    • 70349493688 scopus 로고    scopus 로고
    • Home
    • TIGR (2006) Manatee Home Page. .
    • (2006) Manatee
  • 35
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 36
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Slater GS, Birney E (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6: 31.
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 38
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 40
    • 0035175673 scopus 로고    scopus 로고
    • TIGRFAMs: A protein family resource for the functional identification of proteins
    • Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, et al. (2001) TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res 29: 41-43.
    • (2001) Nucleic Acids Res , vol.29 , pp. 41-43
    • Haft, D.H.1    Loftus, B.J.2    Richardson, D.L.3    Yang, F.4    Eisen, J.A.5
  • 41
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4


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