Re-assembly of the genome of Francisella tularensis subsp. holarctica OSU18

PLoS ONE

Volumn 3, Issue 10, 2008, Pages

  Puiu, Daniela ^a   Salzberg, Steven L ^a  

^a Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIAL STRAIN; CONSENSUS SEQUENCE; CONTROLLED STUDY; FRANCISELLA TULARENSIS; GENE CONSTRUCT; GENE INSERTION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; SUBSPECIES; GENE REARRANGEMENT; GENETICS;

FRANCISELLA TULARENSIS; FRANCISELLA TULARENSIS SUBSP. HOLARCTICA;

BACTERIAL DNA;

CHROMOSOMES, BACTERIAL; DNA, BACTERIAL; FRANCISELLA TULARENSIS; GENE REARRANGEMENT; GENOME, BACTERIAL;

EID: 55649097079     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0003427     Document Type: Article

References (16)

1. Petrosino JF, Xiang Q, Karpathy SE, Jiang H, Yerrapragada S, et al. (2006) Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence. J Bacteriol 188: 6977-6985.
2. Dennis DT, Inglesby TV, Henderson DA, Bartlett JG, Archer MS, et al. (2001) Tularemia as a biological weapon: medical and public health management. JAMA 285: 2763-2773.
3. Johansson A, Farlow J, Larsson P, Dukerich M, Chambers E, et al. (2004) Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis. J Bacteriol 186: 5808-5818.
4. Salzberg SL, Church D, DiCuccio M, Yaschenko E, Ostell J (2004) The genome Assembly Archive: a new public resource. PLoS Biol 2: E285.
5. Phillippy AM, Mason JA, Ayanbule K, Sommer DD, Taviani E, et al. (2007) Comprehensive DNA signature discovery and validation. PLoS Comput Biol 3: e98.
6. Havlak P, Chen R, Durbin KJ, Egan A, Ren Y, et al. (2004) The Atlas genome assembly system. Genome Res 14: 721-732.
7. Gordon H, Abajian C, Green P (1998) Consed: A Graphical Tool for Sequence Finishing. Genome Research 8: 195-202.
8. Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, et al. (2000) A whole-genome assembly of Drosophila. Science 287: 2196-2204.
9. Pop M, Phillippy A, Delcher AL, Salzberg SL (2004) Comparative genome assembly. Brief Bioinform 5: 237-248.
10. White JR, Roberts M, Yorke JA, Pop M (2008) Figaro: a novel statistical method for vector sequence removal. Bioinformatics 24: 462-467.
11. Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, et al. (2004) Versatile and open software for comparing large genomes. Genome Biol 5: R12.
12. Phillippy AM, Schatz MC, Pop M (2008) Genome assembly forensics: finding the elusise mis-assembly. Genome Biol 9: R55.
13. Rohmer L, Fong C, Abmayr S, Wasnick M, Larson Freeman TJ, et al. (2007) Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biol 8: R102.
14. Schatz MC, Phillippy AM, Shneiderman B, Salzberg SL (2007) Hawkeye: an interactive visual analytics tool for genome assemblies. Genome Biol 8: R34.
15. Salzberg SL, Yorke JA (2005) Beware of mis-assembled genomes. Bioinformatics 21: 4320-4321.
16. Enserink M (2008) Anthrax investigation. Full-genome sequencing paved the way from spores to a suspect. Science 321: 898-899.