Back to the future? Molecules take us back to the 1925 classification of the Lembophyllaceae (Bryopsida)

Systematic Botany

Volumn 34, Issue 3, 2009, Pages 443-454

  Quandt, Dietmar ^a   Huttunen, Sanna ^b,e   Tangney, Ray ^c   Stech, Michael ^d  

^a UNIVERSITY OF BONN   (Germany)

^b UNIVERSITY OF HELSINKI   (Finland)

^c DEPARTMENT OF GEOLOGY   (United Kingdom)

^d UNIVERSITEIT LEIDEN BRANCH   (Netherlands)

^e UNIVERSITY OF TURKU   (Finland)

Author keywords

Neckeraceae; Orthostichella; Peristome; Phylogenetics; Pilotrichella; Pleurocarpous mosses

Indexed keywords

ACROCLADIUM; BESTIA; BRYOPHYTA; CAMPTOCHAETE; DOLICHOMITRA; DOLICHOMITRIOPSIS; FALLACIELLA; FIFEA; ISOTHECIUM; LEMBOPHYLLACEAE; LEMBOPHYLLUM; LEPYRODONTACEAE; NECKERACEAE; ORTHOSTICHELLA; PILOTRICHELLA; POROTHAMNIUM; POROTRICHUM; RIGODIUM; TRIPTEROCLADIUM; WEYMOUTHIA;

EID: 70349499646     PISSN: 03636445     EISSN: 15482324     Source Type: Journal    
DOI: 10.1600/036364409789271128     Document Type: Article

References (73)

1. Allen, B. 1999. A revision of the moss genus Lepyrodon (Leucondontales, Lepyrodontaceae). Bryobrothera 5: 23-48.
2. Allen, B.and R.E Magill.2003.ArevisionofPilotrichella(Lembophyllaceae: Musci). Acta Academiae Paedagogicae Agriensis. Sectio Biologiae 24:43-83.
3. Allen, B. and R. E. Magill. 2007. A revision of Orthostichella (Neckeraceae).The Bryologist 110: 1-45.
4. Andrews, A. L. 1949. Taxonomic notes. VIII. The genus Acrocladium. The Bryologist 52: 72-77.
5. Andrews, A. L. 1952. Taxonomic notes. XI. The case of Tripterocladium brewerianum. The Bryologist 55: 166-172.
6. Bescherelle, E. 1872. Prodromos bryologiae Mexicanae ou enumeration des mousses du Mexique avec description des especes nouvelles. Mémoires de la Societe Scientific Natationale. Cherbourg 16: 144-256.
7. Borsch, T., K. W. Hilu, D. Quandt, V. Wilde, C. Neinhuis, and W. Barthlott. 2003. Non-coding sequences of the plastid trnT-trnF region reveal a well resolved phylogeny of basal angiosperms. Journal of Evolutionary Biology 16: 558-576.
8. Brotherus, V. F. 1909. Musci. In Die Natürlichen Pflanzenfamilien, Vol 1(3), eds. A. Engler and K. Prantl. Leipzig: Engelmann.
9. Brotherus, V. F. 1925: Musci. In Die Natürlichen Pflanzenfamilien, ed. 2 Vol 11, ed. A. Engler. Leipzig: Engelmann.
10. Buck, W. R. 1980.Ageneric revision of the Entodontaceae. The Journal of the Hattori Botanical Laboratory 48: 71-159.
11. Buck, W. R. 1994a. A new attempt at understanding the Meteoriaceae. The Journal of the Hattori Botanical Laboratory 75: 51-72.
12. Buck, W. R. 1994b. The resurrection of Orthostichella. The Bryologist 97:434-435.
13. Buck, W. R. and B. Goffinet. 2000. Morphology and classification of mosses. Pp. 71-123 in Bryophyte Biology, eds. A. J. Shaw and B. Goffinet. Cambridge: Cambridge University Press.
14. Buck, W. R. and D. H. Vitt. 1986. Suggestions for a new familial classification of pleurocarpous mosses. Taxon 35: 21-60.
15. Buck, W. R., C. J. Cox, A. J. Shaw, and B. Goffinet. 2004. Ordinal relationships of pleurocarpous mosses, with special emphasis on the Hookeriales. Systematics and Biodiversity 2: 121-145.
16. Buck, W. R., B. Goffinet, and A. Shaw. 2000a. Testing morphological concepts of orders of pleurocarpous mosses (Bryophyta) using phylogenetic reconstructions based on trnL-F and rps4 sequences. Molecular Phylogenetics and Evolution 16: 180-198.
17. Buck, W. R., B. Goffinet, and A. Shaw. 2000b. Novel relationships in pleurocarpous mosses as revealed by cpDNA sequences. The Bryologist 103: 774-789.
18. Crosby, M. R, R. E. Magill, B. Allen, and S. He 1999 A checklist of the mosses St. Louis Missouri Botanical Garden
19. Crum, H. 1981. Taxonomic and nomenclatural notes on middle American mosses. The Bryologist 84: 390-393.
20. Crum, H. 1987. Bestia, Tripterocladium, and Isothecium: an explication of relationships. The Bryologist 90: 40-42.
21. Crum, H. 1991. A partial clarification of the Lembophyllaceae. The Journal of the Hattori Botanical Laboratory 69: 313-322.
22. Crum, H. and L. E. Anderson. 1981. Mosses of eastern North America. Vol. 2. New York: Columbia University Press.
23. Dixon, H. N. 1928. Studies in the bryology of New Zealand part IV. Bulletin of the New Zealand Institute. 3: 299-372.
24. Doyle, J. J. and J. L. Doyle. 1990. Isolation of plant DNA from fresh tissue. Focus (San Francisco, Calif.) 12: 13-15.
25. Enroth, J. 1994. On the evolution and circumscription of the Neckeraceae (Musci). The Journal of the Hattori Botanical Laboratory 76: 13-20.
26. Enroth, J. 1995. Notes on the Neckeraceae (Musci). 21-22. A taxonomic study of Porotrichopsis flacca and Neckeropsis inundata. Fragmenta Floristica et Geobotanica 40: 181-188.
27. Farris, J. S., M. Källersjö, and A. G. Kluge. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
28. Fleischer, M. 1906-08. Die Musci der Flora von Buitenzorg (Zugleich Laubmoos-Flora von Java). Vol. 3. Leiden: E. J. Brill. Reprint 1977. Vaduz: J. Cramer.
29. Fleischer, M. 1915-1923. Die Musci der Flora von Buitenzorg (Zugleich Laubmoos-Flora von Java). Vol. 4. Leiden: E. J. Brill. Reprint 1977. Vaduz:J. Cramer.
30. Goffinet, B. and W. R. Buck. 2004. Systematics of the Bryophyta (Mosses): from molecules to a revised classification. Monographs in Systematic Botany from the Missouri Botanical Garden 98: 205-239.
31. Hedenäs, L. 1992. Flora of Madeiran pleurocarpous mosses (Isobryales, Hypnobryales, Hookeriales). Bryophytorum Bibliotheca 44: 1-165.
32. Hedenäs, L. 1995. Higher taxonomic level relationships among diplolepidous mosses: a cladistic overview. Journal of Bryology 18: 723-781.
33. Huelsenbeck, J. P., B. Larget, R. E. Miller, and F. Ronquist. 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology 51: 673 - 688.
34. Huelsenbeck, J. P., F. Ronquist, R. Nielsen, and J. P. Bollback. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314.
35. Huttunen, S. and M. Ignatov. 2004. Phylogeny of the Brachytheciaceae (Bryophyta) based on morphology and sequence level data. Cladistics 20: 151-183.
36. Huttunen, S., M. Ignatov, K. Müller, and D. Quandt. 2004. The phylogeny and evolution of epiphytism in three moss families Meteoriaceae, Brachytheciaceae and Lembophyllaceae. Monographs in Systematic Botany from the Missouri Botanical Garden 98: 328-361.
37. Ignatov, M. S. 1999. On pseudoparaphyllia in Brachytheciaceae and Meteoriaceae (Musci). Acta Botanica Fennica 165: 73-84.
38. Ignatov, M. S. and S. Huttunen. 2002. Brachytheciaceae (Bryophyta) - a family of sibling genera. Arctoa 11: 245-296.
39. Jaeger, A. and F. Sauerbeck. 1877. Genera et species muscorum systematice disposita seu adumbration florae muscorum totius orbis terrarium. Bericht über die Thätigkeiten der St. Gallischen Naturwissenschaftlichen Gesellschaft 1875-76: 201-371.
40. Kelchner, S. A. 2000. The evolution of non-coding chloroplast DNA and its application in plant systematics. Annals of the Missouri Botanical Garden 87: 482-498.
41. Lorentz, P. G. 1864. Moosstudien. Leipzig: Wilhelm Engelmann.
42. Mathews, D. H., M. Zucker, and D. H. Turner. 2001. RNAstructure 3.6. http//www.bioinfo.math.edu.
43. Müller, K. 2004a. PRAP - calculation of Bremer support for large data sets. Molecular Phylogenetics and Evolution 31: 780-782.
44. Müller, K. 2004b. SeqState - primer design and sequence statistics for phylogenetic DNA data sets. Applied Bioinformatics 4: 65-69.
45. Müller, K., D. Quandt, J. Müller, and C. Neinhuis. 2005. PhyDE0995: Phylogenetic Data Editor, Dresden: Distributed by the author.
46. Müller, J. and K. Müller. 2004. TreeGraph: automated drawing of complex tree figures using an extensible tree description format. Molecular Ecology 4: 786-788.
47. Nixon, K. C. 1999. The parsimony ratchet, a new method for rapid parsimony analyses. Cladistics 15: 407-414.
48. Norris, D. H. and J. Enroth. 1990. Description of Bryolawtonia Norris & Enroth (Thamnobryaceae), with observations on the genus Bestia. The Bryologist 93: 328-331.
49. Nuin, P. A. S. 2005. MTgui - a simple interface to ModelTest. Program distributed by the author. University Health Network, University of Toronto. http://www.genedrift.org/mtgui.php.
50. Ochyra, R. and C. M. Matteri. 2001. Bryophyta, Musci, Amblystegiaceae. Flora Criptogámica de Tierra del Fuego 14: 1-95.
51. Pedersen, N. and L. Hedenäs. 2001. Phylogenetic relationships within the Plagiotheciaceae. Lindbergia 26: 62-76.
52. Pedersen, N. and L. Hedenäs. 2002. Phylogeny of the Plagiotheciaceae based on molecular and morphological evidence. The Bryologist 105: 310-324.
53. Posada, D. and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
54. Quandt, D. and M. Stech. 2004. Molecular evolution and phylogenetic utility of the chloroplast trnT-trnF region in bryophytes. Plant Biology 6: 545-554.
55. Quandt, D. and M. Stech. 2005. Molecular evolution and secondary structure of the chloroplast trnL intron in bryophytes. Molecular Phylogenetics and Evolution 36: 429-443.
56. Quandt, D., S. Huttunen, H. Streimann, J.-P. Frahm, and W. Frey. 2004b. Molecular phylogenetics of the Meteoriaceae s. str.: focusing on the genera Meteorium and Papillaria. Molecular Phylogenetics and Evolution 32: 435-461.
57. Quandt, D., K. Müller, and S. Huttunen. 2003. Characterisation of the chloroplast DNA psbT-H region and the influence of dyad symmetrical elements on phylogenetic reconstructions. Plant Biology 5: 400-410.
58. Quandt, D., K. Müller, M. Stech, K. W. Hilu, W. Frey, J.-P. Frahm, and T. Borsch. 2004a. Molecular evolution of the chloroplast trnL-F region in land plants. Monographs in Systematic Botany from the Missouri Botanical Garden 98: 13-37.
59. Quandt, D., R. S. Tangney, J.-P. Frahm, and W. Frey. 2000. A molecular contribution for understanding the Lembophyllaceae (Bryopsida) based on noncoding chloroplast regions (cpDNA) and ITS2 (nrDNA) sequence data. Studies in austral temperate rain forest bryophytes 8. The Journal of the Hattori Botanical Laboratory 89: 71-92.
60. Robinson, H. 1963. Generic revisions of North American Brachytheciacae. The Bryologist 68: 313-320.
61. Robinson, H. 1975. The mosses of Juan Fernandez Islands. Smithsonian Contributions to Botany 27: 1-88.
62. Ronquist, F. and J. P. Huelsenbeck. 2003. Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
63. Shaw, A. J., C. J. Cox, B. Goffinet, W. R. Buck, and S. B. Boles. 2003. Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (Bryophyta). Evolution 57: 2226-2241.
64. Simmons, M. P. and H. Ochoterena. 2000. Gaps as characters in sequence- based phyogenetic analyses. Systematic Biology 49: 369-381.
65. Streimann, H. 1991. Taxonomic studies on Australian Meteoriaceae (Musci). 2: The genera Aerobryopsis, Barbella, Floribundaria, Meteoriopsis, Meteorium and Weymouthia. The Journal of the Hattori Botanical Laboratory 69: 277 - 312.
66. Swofford, D. L. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b3a. Sunderland: Sinauer Associates.
67. Tan, B. C., S. He, and P. Isoviita. 1992. A review of Isotheciopsis and Neobarbella (Lembophyllaceae, Musci). Cryptogamic Botany 2: 314-316.
68. Thériot, I. 1934. [1935]. Contribution à la flore bryologique du Chili. Revue Bryologique et Lichénologique. Nouvelle Series 7: 167-180.
69. Tangney, R. S. 1997a. A taxonomic revision of the genus Camptochaete Reichdt., Lembophyllaceae (Musci). The Journal of the Hattori Botanical Laboratory 81: 53-121.
70. Tangney, R. S. 1997b. A generic revision of the Lembophyllaceae. The Journal of the Hattori Botanical Laboratory 81: 123-153.
71. Vitt, D. H. 1984. Classification of the Bryopsida. Pp. 696-757 in New Manual of Bryology Vol. 2, ed. R. M. Schuster. Nichinan: Hattori Botanical Laboratori.
72. Walther, K. 1983. V. 2 Bryophytina. Laubmoose. Pp. 64-89 in A. Engler's Syllabus der Pflanzenfamilien, eds. J. Gerloff and J. Poelt. Berlin: Gebrüder Borntraeger.
73. Zomlefer, W. B. 1993. A revision of Rigodium (Musci: Rigodiaceae). The Bryologist 96: 1-72.