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Volumn 276, Issue 20, 2009, Pages 5860-5869

A moss pentatricopeptide repeat protein binds to the 3′ end of plastid clpP pre-mRNA and assists with mRNA maturation

Author keywords

ClpP; Physcomitrella patens; PPR protein; RNA cleavage; RNA stability.

Indexed keywords

BINDING PROTEIN; LYASE; MESSENGER RNA; PROTEIN PENTATRICOPEPTIDE REPEAT; RIBONUCLEASE; RNA; UNCLASSIFIED DRUG;

EID: 70349492910     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2009.07267.x     Document Type: Article
Times cited : (27)

References (44)
  • 1
    • 0033860532 scopus 로고    scopus 로고
    • Participation of nuclear genes in chloroplast gene expression
    • Barkan A Goldschmidt-Clermont M (2000) Participation of nuclear genes in chloroplast gene expression. Biochimie 82, 559 572.
    • (2000) Biochimie , vol.82 , pp. 559-572
    • Barkan, A.1    Goldschmidt-Clermont, M.2
  • 2
    • 4344705656 scopus 로고    scopus 로고
    • Chloroplast RNA-binding and pentatricopeptide repeat proteins
    • Nakamura T, Schuster G, Sugiura M Sugita M (2004) Chloroplast RNA-binding and pentatricopeptide repeat proteins. Biochem Soc Trans 32, 571 574.
    • (2004) Biochem Soc Trans , vol.32 , pp. 571-574
    • Nakamura, T.1    Schuster, G.2    Sugiura, M.3    Sugita, M.4
  • 3
    • 33645739638 scopus 로고    scopus 로고
    • PTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression
    • Pfalz J, Liere K, Kandlbinder A, Dietz KJ Oelmuller R (2006) pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Plant Cell 18, 176 197.
    • (2006) Plant Cell , vol.18 , pp. 176-197
    • Pfalz, J.1    Liere, K.2    Kandlbinder, A.3    Dietz, K.J.4    Oelmuller, R.5
  • 6
    • 0033965922 scopus 로고    scopus 로고
    • The PPR motif - A TPR-related motif prevalent in plant organellar proteins
    • Small ID Peeters N (2000) The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 25, 46 47.
    • (2000) Trends Biochem Sci , vol.25 , pp. 46-47
    • Small, I.D.1    Peeters, N.2
  • 8
    • 9944255151 scopus 로고    scopus 로고
    • Identification and characterization of cDNAs encoding pentatricopeptide repeat proteins in the basal land plant, the moss Physcomitrella patens
    • Hattori M, Hasebe M Sugita M (2004) Identification and characterization of cDNAs encoding pentatricopeptide repeat proteins in the basal land plant, the moss Physcomitrella patens. Gene 343, 305 311.
    • (2004) Gene , vol.343 , pp. 305-311
    • Hattori, M.1    Hasebe, M.2    Sugita, M.3
  • 10
    • 20444412435 scopus 로고    scopus 로고
    • Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis
    • Cushing DA, Forsthoefel NR, Gestaut DR Vernon DM (2005) Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis. Planta 221, 424 436.
    • (2005) Planta , vol.221 , pp. 424-436
    • Cushing, D.A.1    Forsthoefel, N.R.2    Gestaut, D.R.3    Vernon, D.M.4
  • 11
    • 33745461461 scopus 로고    scopus 로고
    • Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III
    • Ding YH, Liu NY, Tang ZS, Liu J Yang WC (2006) Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III. Plant Cell 18, 815 830.
    • (2006) Plant Cell , vol.18 , pp. 815-830
    • Ding, Y.H.1    Liu, N.Y.2    Tang, Z.S.3    Liu, J.4    Yang, W.C.5
  • 12
    • 0344237359 scopus 로고    scopus 로고
    • A chloroplast-localized PPR protein required for plastid ribosome accumulation
    • Williams PM Barkan A (2003) A chloroplast-localized PPR protein required for plastid ribosome accumulation. Plant J 36, 675 686.
    • (2003) Plant J , vol.36 , pp. 675-686
    • Williams, P.M.1    Barkan, A.2
  • 14
    • 48549091828 scopus 로고    scopus 로고
    • The pentratricopeptide repeat protein DELAYED GREENING1 is involved in the regulation of early chloroplast development and chloroplast gene expression in Arabidopsis
    • Chi W, Ma J, Zhang D, Guo J, Chen F, Lu C Zhang L (2008) The pentratricopeptide repeat protein DELAYED GREENING1 is involved in the regulation of early chloroplast development and chloroplast gene expression in Arabidopsis. Plant Physiol 147, 573 584.
    • (2008) Plant Physiol , vol.147 , pp. 573-584
    • Chi, W.1    Ma, J.2    Zhang, D.3    Guo, J.4    Chen, F.5    Lu, C.6    Zhang, L.7
  • 15
    • 0033522445 scopus 로고    scopus 로고
    • Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression
    • Fisk DG, Walker MB Barkan A (1999) Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression. EMBO J 18, 2621 2630.
    • (1999) EMBO J , vol.18 , pp. 2621-2630
    • Fisk, D.G.1    Walker, M.B.2    Barkan, A.3
  • 16
    • 1842483066 scopus 로고    scopus 로고
    • PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis
    • Yamazaki H, Tasaka M Shikanai T (2004) PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis. Plant J 38, 152 163.
    • (2004) Plant J , vol.38 , pp. 152-163
    • Yamazaki, H.1    Tasaka, M.2    Shikanai, T.3
  • 17
    • 0036678039 scopus 로고    scopus 로고
    • A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants
    • Bentolila S, Alfonso AA Hanson MR (2002) A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants. Proc Natl Acad Sci USA 99, 10887 10892.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 10887-10892
    • Bentolila, S.1    Alfonso, A.A.2    Hanson, M.R.3
  • 18
    • 0038694953 scopus 로고    scopus 로고
    • A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice
    • Kazama T Toriyama K (2003) A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice. FEBS Lett 544, 99 102.
    • (2003) FEBS Lett , vol.544 , pp. 99-102
    • Kazama, T.1    Toriyama, K.2
  • 19
    • 0037854732 scopus 로고    scopus 로고
    • Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish
    • Koizuka N, Imai R, Fujimoto H, Hayakawa T, Kimura Y, Kohno-Murase J, Sakai T, Kawasaki S Imamura J (2003) Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish. Plant J 34, 407 415.
    • (2003) Plant J , vol.34 , pp. 407-415
    • Koizuka, N.1    Imai, R.2    Fujimoto, H.3    Hayakawa, T.4    Kimura, Y.5    Kohno-Murase, J.6    Sakai, T.7    Kawasaki, S.8    Imamura, J.9
  • 20
    • 33646835190 scopus 로고    scopus 로고
    • Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing
    • Wang Z, Zou Y, Li X, Zhang Q, Chen L, Wu H, Su D, Chen Y, Guo J, Luo D et al. (2006) Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell 18, 676 687.
    • (2006) Plant Cell , vol.18 , pp. 676-687
    • Wang, Z.1    Zou, Y.2    Li, X.3    Zhang, Q.4    Chen, L.5    Wu, H.6    Su, D.7    Chen, Y.8    Guo, J.9    Luo, D.10
  • 21
    • 56549095978 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins: A socket set for organelle gene expression
    • Schmitz-Linneweber C Small I (2008) Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci 13, 663 670.
    • (2008) Trends Plant Sci , vol.13 , pp. 663-670
    • Schmitz-Linneweber, C.1    Small, I.2
  • 22
    • 0033150672 scopus 로고    scopus 로고
    • Topological characteristics of helical repeat proteins
    • Groves MR Barford D (1999) Topological characteristics of helical repeat proteins. Curr Opin Struct Biol 9, 383 389.
    • (1999) Curr Opin Struct Biol , vol.9 , pp. 383-389
    • Groves, M.R.1    Barford, D.2
  • 23
    • 0142088891 scopus 로고    scopus 로고
    • RNA-binding properties of HCF152, an Arabidopsis PPR protein involved in the processing of chloroplast RNA
    • Nakamura T, Meierhoff K, Westhoff P Schuster G (2003) RNA-binding properties of HCF152, an Arabidopsis PPR protein involved in the processing of chloroplast RNA. Eur J Biochem 270, 4070 4081.
    • (2003) Eur J Biochem , vol.270 , pp. 4070-4081
    • Nakamura, T.1    Meierhoff, K.2    Westhoff, P.3    Schuster, G.4
  • 24
    • 31544432771 scopus 로고    scopus 로고
    • RNA immunoprecipitation and microarray analysis show a chloroplast pentatricopeptide repeat protein to be associated with the 5′ region of mRNAs whose translation it activates
    • Schmitz-Linneweber C, Williams-Carrier R Barkan A (2005) RNA immunoprecipitation and microarray analysis show a chloroplast pentatricopeptide repeat protein to be associated with the 5′ region of mRNAs whose translation it activates. Plant Cell 17, 2791 2804.
    • (2005) Plant Cell , vol.17 , pp. 2791-2804
    • Schmitz-Linneweber, C.1    Williams-Carrier, R.2    Barkan, A.3
  • 25
    • 33845986746 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing
    • Okuda K, Nakamura T, Sugita M, Shimizu T Shikanai T (2006) A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing. J Biol Chem 281, 37661 37667.
    • (2006) J Biol Chem , vol.281 , pp. 37661-37667
    • Okuda, K.1    Nakamura, T.2    Sugita, M.3    Shimizu, T.4    Shikanai, T.5
  • 26
    • 49249105375 scopus 로고    scopus 로고
    • Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice
    • Kazama T, Nakamura T, Watanabe M, Sugita M Toriyama K (2008) Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Plant J 55, 619 628.
    • (2008) Plant J , vol.55 , pp. 619-628
    • Kazama, T.1    Nakamura, T.2    Watanabe, M.3    Sugita, M.4    Toriyama, K.5
  • 27
    • 34249859919 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein is required for RNA processing of clpP pre-mRNA in moss chloroplasts
    • Hattori M, Miyake H Sugita M (2007) A pentatricopeptide repeat protein is required for RNA processing of clpP pre-mRNA in moss chloroplasts. J Biol Chem 282, 10773 10782.
    • (2007) J Biol Chem , vol.282 , pp. 10773-10782
    • Hattori, M.1    Miyake, H.2    Sugita, M.3
  • 28
    • 0037493295 scopus 로고    scopus 로고
    • Secondary structures common to chloroplast mRNA 3′-untranslated regions direct cleavage by CSP41, an endoribonuclease belonging to the short chain dehydrogenase/reductase superfamily
    • Bollenbach TJ Stern DB (2003) Secondary structures common to chloroplast mRNA 3′-untranslated regions direct cleavage by CSP41, an endoribonuclease belonging to the short chain dehydrogenase/reductase superfamily. J Biol Chem 278, 25832 25838.
    • (2003) J Biol Chem , vol.278 , pp. 25832-25838
    • Bollenbach, T.J.1    Stern, D.B.2
  • 29
    • 0025080564 scopus 로고
    • Control of mRNA stability in chloroplasts by 3′ inverted repeats: Effects of stem and loop mutations on degradation of psbA mRNA in vitro
    • Adams CC Stern DB (1990) Control of mRNA stability in chloroplasts by 3′ inverted repeats: effects of stem and loop mutations on degradation of psbA mRNA in vitro. Nucleic Acids Res 18, 6003 6010.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6003-6010
    • Adams, C.C.1    Stern, D.B.2
  • 30
    • 0025775279 scopus 로고
    • Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein
    • Schuster G Gruissem W (1991) Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein. EMBO J 10, 1493 1502.
    • (1991) EMBO J , vol.10 , pp. 1493-1502
    • Schuster, G.1    Gruissem, W.2
  • 31
    • 33847211810 scopus 로고    scopus 로고
    • LOVASTATIN INSENSITIVE 1, a novel pentatricopeptide repeat protein, is a potential regulatory factor of isoprenoid biosynthesis in Arabidopsis
    • Kobayashi K, Suzuki M, Tang J, Nagata N, Ohyama K, Seki H, Kiuchi R, Kaneko Y, Nakazawa M, Matsui M et al. (2007) LOVASTATIN INSENSITIVE 1, a novel pentatricopeptide repeat protein, is a potential regulatory factor of isoprenoid biosynthesis in Arabidopsis. Plant Cell Physiol 48, 322 331.
    • (2007) Plant Cell Physiol , vol.48 , pp. 322-331
    • Kobayashi, K.1    Suzuki, M.2    Tang, J.3    Nagata, N.4    Ohyama, K.5    Seki, H.6    Kiuchi, R.7    Kaneko, Y.8    Nakazawa, M.9    Matsui, M.10
  • 32
    • 67651171227 scopus 로고    scopus 로고
    • Site-specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts
    • Pfalz J, Bayraktar OA, Prikryl J Barkan A (2009) Site-specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts. EMBO J 28, 2042 2052.
    • (2009) EMBO J , vol.28 , pp. 2042-2052
    • Pfalz, J.1    Bayraktar, O.A.2    Prikryl, J.3    Barkan, A.4
  • 33
    • 50649095496 scopus 로고    scopus 로고
    • Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand
    • Williams-Carrier R, Kroeger T Barkan A (2008) Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand. RNA 14, 1930 1941.
    • (2008) RNA , vol.14 , pp. 1930-1941
    • Williams-Carrier, R.1    Kroeger, T.2    Barkan, A.3
  • 34
    • 24044495582 scopus 로고    scopus 로고
    • Specific roles of 5′ RNA secondary structures in stabilizing transcripts in chloroplasts
    • Suay L, Salvador ML, Abesha E Klein U (2005) Specific roles of 5′ RNA secondary structures in stabilizing transcripts in chloroplasts. Nucleic Acids Res 33, 4754 4761.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4754-4761
    • Suay, L.1    Salvador, M.L.2    Abesha, E.3    Klein, U.4
  • 35
    • 0024979241 scopus 로고
    • Chloroplast gene expression: How plants turn their plastids on
    • Gruissem W (1989) Chloroplast gene expression: how plants turn their plastids on. Cell 56, 161 170.
    • (1989) Cell , vol.56 , pp. 161-170
    • Gruissem, W.1
  • 36
    • 11144344994 scopus 로고    scopus 로고
    • Chloroplast RNA processing and stability
    • Herrin DL Nickelsen J (2004) Chloroplast RNA processing and stability. Photosynth Res 82, 301 314.
    • (2004) Photosynth Res , vol.82 , pp. 301-314
    • Herrin, D.L.1    Nickelsen, J.2
  • 37
    • 34548862890 scopus 로고    scopus 로고
    • Processing, degradation, and polyadenylation of chloroplast transcripts
    • in. Vol. Cell and Molecular Biology of plastids. Bock, R. ed.), pp. Springer-Verlag. Berlin
    • Bollenbach T, Schuster G, Portnoy G Stern D (2007) Processing, degradation, and polyadenylation of chloroplast transcripts. in Topics in Current Genetics, Vol. 19, Cell and Molecular Biology of plastids (Bock R, ed.), pp. 175 211. Springer-Verlag, Berlin.
    • (2007) Topics in Current Genetics , vol.19 , pp. 175-211
    • Bollenbach, T.1    Schuster, G.2    Portnoy, G.3    Stern, D.4
  • 38
    • 0023663880 scopus 로고
    • Control of plastid gene expression: 3′ inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription
    • Stern DB Gruissem W (1987) Control of plastid gene expression: 3′ inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription. Cell 51, 1145 1157.
    • (1987) Cell , vol.51 , pp. 1145-1157
    • Stern, D.B.1    Gruissem, W.2
  • 39
    • 0035808422 scopus 로고    scopus 로고
    • Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma
    • Nakamura T, Ohta M, Sugiura M Sugita M (2001) Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma. J Biol Chem 276, 147 152.
    • (2001) J Biol Chem , vol.276 , pp. 147-152
    • Nakamura, T.1    Ohta, M.2    Sugiura, M.3    Sugita, M.4
  • 40
    • 0141743660 scopus 로고    scopus 로고
    • Chloroplast RNA-binding proteins
    • Nickelsen J (2003) Chloroplast RNA-binding proteins. Curr Genet 43, 392 399.
    • (2003) Curr Genet , vol.43 , pp. 392-399
    • Nickelsen, J.1
  • 41
    • 57149118430 scopus 로고    scopus 로고
    • A conserved DYW domain of the pentatricopeptide repeat protein possesses a novel endoribonuclease activity
    • Nakamura T Sugita M (2008) A conserved DYW domain of the pentatricopeptide repeat protein possesses a novel endoribonuclease activity. FEBS Lett 582, 4163 4168.
    • (2008) FEBS Lett , vol.582 , pp. 4163-4168
    • Nakamura, T.1    Sugita, M.2
  • 42
    • 35848960999 scopus 로고    scopus 로고
    • Transcription of plastid genes is modulated by two nuclear-encoded alpha subunits of plastid RNA polymerase in the moss Physcomitrella patens
    • Kabeya Y, Kobayashi Y, Suzuki H, Itoh J Sugita M (2007) Transcription of plastid genes is modulated by two nuclear-encoded alpha subunits of plastid RNA polymerase in the moss Physcomitrella patens. Plant J 52, 730 741.
    • (2007) Plant J , vol.52 , pp. 730-741
    • Kabeya, Y.1    Kobayashi, Y.2    Suzuki, H.3    Itoh, J.4    Sugita, M.5
  • 44
    • 26944458557 scopus 로고    scopus 로고
    • CRS1, a chloroplast group II intron splicing factor, promotes intron folding through specific interactions with two intron domains
    • Ostersetzer O, Cooke AM, Watkins KP Barkan A (2005) CRS1, a chloroplast group II intron splicing factor, promotes intron folding through specific interactions with two intron domains. Plant Cell 17, 241 255.
    • (2005) Plant Cell , vol.17 , pp. 241-255
    • Ostersetzer, O.1    Cooke, A.M.2    Watkins, K.P.3    Barkan, A.4


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