-
3
-
-
58149181485
-
Lipids on the move: simulations of membrane pores, domains, stalks and curves
-
Marrink S.J., de Vries A.H., and Tieleman D.P. Lipids on the move: simulations of membrane pores, domains, stalks and curves. Biochim. Biophys. Acta 1788 (2009) 149-168
-
(2009)
Biochim. Biophys. Acta
, vol.1788
, pp. 149-168
-
-
Marrink, S.J.1
de Vries, A.H.2
Tieleman, D.P.3
-
4
-
-
0021104058
-
Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles
-
Lewis B.A., and Engelman D.M. Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles. J. Mol. Biol. 166 (1983) 211-217
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 211-217
-
-
Lewis, B.A.1
Engelman, D.M.2
-
5
-
-
34250355206
-
The condensing effect of cholesterol in lipid bilayers
-
Hung W.C., Lee M.T., Chen F.Y., and Huang H.W. The condensing effect of cholesterol in lipid bilayers. Biophys. J. 92 (2007) 3960-3967
-
(2007)
Biophys. J.
, vol.92
, pp. 3960-3967
-
-
Hung, W.C.1
Lee, M.T.2
Chen, F.Y.3
Huang, H.W.4
-
6
-
-
54049156215
-
The effect of cholesterol on short- and long-chain monounsaturated lipid bilayers as determined by molecular dynamics simulations and x-ray scattering
-
Kucerka N., Perlmutter J.D., Pan J., Tristram-Nagle S., Katsaras J., and Sachs J.N. The effect of cholesterol on short- and long-chain monounsaturated lipid bilayers as determined by molecular dynamics simulations and x-ray scattering. Biophys. J. 95 (2008) 2792-2805
-
(2008)
Biophys. J.
, vol.95
, pp. 2792-2805
-
-
Kucerka, N.1
Perlmutter, J.D.2
Pan, J.3
Tristram-Nagle, S.4
Katsaras, J.5
Sachs, J.N.6
-
8
-
-
47749126522
-
Liquid-liquid domains in bilayers detected by wide angle x-ray scattering
-
Mills T.T., Tristram-Nagle S., Heberle F.A., Morales N.F., Zhao J., Wu J., Toombes G.E., Nagle J.F., and Feigenson G.W. Liquid-liquid domains in bilayers detected by wide angle x-ray scattering. Biophys. J. 95 (2008) 682-690
-
(2008)
Biophys. J.
, vol.95
, pp. 682-690
-
-
Mills, T.T.1
Tristram-Nagle, S.2
Heberle, F.A.3
Morales, N.F.4
Zhao, J.5
Wu, J.6
Toombes, G.E.7
Nagle, J.F.8
Feigenson, G.W.9
-
9
-
-
33646170214
-
Simulation-based methods for interpreting x-ray data from lipid bilayers
-
Klauda J.B., Kucerka N., Brooks B.R., Pastor R.W., and Nagle J.F. Simulation-based methods for interpreting x-ray data from lipid bilayers. Biophys. J. 90 (2006) 2796-2807
-
(2006)
Biophys. J.
, vol.90
, pp. 2796-2807
-
-
Klauda, J.B.1
Kucerka, N.2
Brooks, B.R.3
Pastor, R.W.4
Nagle, J.F.5
-
10
-
-
0242498757
-
Interpretation of small angle x-ray measurements guided by molecular dynamics simulations of lipid bilayers
-
Sachs J.N., Petrache H.I., and Woolf T.B. Interpretation of small angle x-ray measurements guided by molecular dynamics simulations of lipid bilayers. Chem. Phys. Lipids 126 (2003) 211-223
-
(2003)
Chem. Phys. Lipids
, vol.126
, pp. 211-223
-
-
Sachs, J.N.1
Petrache, H.I.2
Woolf, T.B.3
-
12
-
-
49449114817
-
Large-scale molecular dynamics simulations of self-assembling systems
-
Klein M.L., and Shinoda W. Large-scale molecular dynamics simulations of self-assembling systems. Science (New York, N.Y.) 321 (2008) 798-800
-
(2008)
Science (New York, N.Y.)
, vol.321
, pp. 798-800
-
-
Klein, M.L.1
Shinoda, W.2
-
14
-
-
34547474332
-
The MARTINI force field: coarse grained model for biomolecular simulations
-
Marrink S.J., Risselada H.J., Yefimov S., Tieleman D.P., and de Vries A.H. The MARTINI force field: coarse grained model for biomolecular simulations. J. Phys. Chem. 111 (2007) 7812-7824
-
(2007)
J. Phys. Chem.
, vol.111
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
Yefimov, S.3
Tieleman, D.P.4
de Vries, A.H.5
-
15
-
-
0042193019
-
The mechanism of vesicle fusion as revealed by molecular dynamics simulations
-
Marrink S.J., and Mark A.E. The mechanism of vesicle fusion as revealed by molecular dynamics simulations. J. Am. Chem. Soc. 125 (2003) 11144-11145
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 11144-11145
-
-
Marrink, S.J.1
Mark, A.E.2
-
16
-
-
49449107938
-
The molecular mechanism of lipid monolayer collapse
-
Baoukina S., Monticelli L., Risselada H.J., Marrink S.J., and Tieleman D.P. The molecular mechanism of lipid monolayer collapse. Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 10803-10808
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 10803-10808
-
-
Baoukina, S.1
Monticelli, L.2
Risselada, H.J.3
Marrink, S.J.4
Tieleman, D.P.5
-
17
-
-
19744367689
-
Simulation of gel phase formation and melting in lipid bilayers using a coarse grained model
-
Marrink S.J., Risselada J., and Mark A.E. Simulation of gel phase formation and melting in lipid bilayers using a coarse grained model. Chem. Phys. Lipids 135 (2005) 223-244
-
(2005)
Chem. Phys. Lipids
, vol.135
, pp. 223-244
-
-
Marrink, S.J.1
Risselada, J.2
Mark, A.E.3
-
18
-
-
56249119219
-
The molecular face of lipid rafts in model membranes
-
Risselada H.J., and Marrink S.J. The molecular face of lipid rafts in model membranes. Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 17367-17372
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 17367-17372
-
-
Risselada, H.J.1
Marrink, S.J.2
-
19
-
-
4444293963
-
Simulation of domain formation in DLPC-DSPC mixed bilayers
-
Faller R., and Marrink S.J. Simulation of domain formation in DLPC-DSPC mixed bilayers. Langmuir 20 (2004) 7686-7693
-
(2004)
Langmuir
, vol.20
, pp. 7686-7693
-
-
Faller, R.1
Marrink, S.J.2
-
20
-
-
1642485164
-
Coarse grained model for semiquantitative lipid simulations
-
Marrink S.J., de Vries A.H., and Mark A.E. Coarse grained model for semiquantitative lipid simulations. J. Phys. Chem. 108 (2004) 750-760
-
(2004)
J. Phys. Chem.
, vol.108
, pp. 750-760
-
-
Marrink, S.J.1
de Vries, A.H.2
Mark, A.E.3
-
21
-
-
58149164577
-
Peptide aggregation and pore formation in a lipid bilayer: a combined coarse-grained and all atom molecular dynamics study
-
Thogersen L., Schiott B., Vosegaard T., Nielsen N.C., and Tajkhorshid E. Peptide aggregation and pore formation in a lipid bilayer: a combined coarse-grained and all atom molecular dynamics study. Biophys. J. 95 (2008) 4337-4347
-
(2008)
Biophys. J.
, vol.95
, pp. 4337-4347
-
-
Thogersen, L.1
Schiott, B.2
Vosegaard, T.3
Nielsen, N.C.4
Tajkhorshid, E.5
-
22
-
-
0036681718
-
Computer simulation studies of biomembranes using a coarse grain model
-
Lopez C.F., Moore P.B., Shelley J.C., Shelley M.Y., and Klein M.L. Computer simulation studies of biomembranes using a coarse grain model. Comput. Phys. Commun. 147 (2002) 1-6
-
(2002)
Comput. Phys. Commun.
, vol.147
, pp. 1-6
-
-
Lopez, C.F.1
Moore, P.B.2
Shelley, J.C.3
Shelley, M.Y.4
Klein, M.L.5
-
24
-
-
27344454932
-
GROMACS: fast, flexible, and free
-
Van Der Spoel D., Lindahl E., Hess B., Groenhof G., Mark A.E., and Berendsen H.J. GROMACS: fast, flexible, and free. J. Comput. Chem. 26 (2005) 1701-1718
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.6
-
25
-
-
0000988903
-
Thermotropic phase transitions of pure lipids in model membranes and their modifications by membrane proteins
-
Jost P.C., and Griffith O.H. (Eds), John Wiley & Sons, New York
-
Silvius J.R. Thermotropic phase transitions of pure lipids in model membranes and their modifications by membrane proteins. In: Jost P.C., and Griffith O.H. (Eds). Lipid-Protein Interactions vol. 2 (1982), John Wiley & Sons, New York 239-281
-
(1982)
Lipid-Protein Interactions
, vol.2
, pp. 239-281
-
-
Silvius, J.R.1
-
26
-
-
84986512474
-
CHARMM: a program for macromolecular energy, minimization, and dynamics calculations
-
Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., and Karplus M. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4 (1983) 187-217
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
27
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips J.C., Braun R., Wang W., Gumbart J., Tajkhorshid E., Villa E., Chipot C., Skeel R.D., Kale L., and Schulten K. Scalable molecular dynamics with NAMD. J. Comput. Chem. 26 (2005) 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
29
-
-
33646446451
-
Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains
-
Kucerka N., Tristram-Nagle S., and Nagle J.F. Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains. J. Membr. Biol. 208 (2005) 193-202
-
(2005)
J. Membr. Biol.
, vol.208
, pp. 193-202
-
-
Kucerka, N.1
Tristram-Nagle, S.2
Nagle, J.F.3
-
30
-
-
51649129838
-
Lipid bilayer structure determined by the simultaneous analysis of neutron and x-ray scattering data
-
Kucerka N., Nagle J.F., Sachs J.N., Feller S.E., Pencer J., Jackson A., and Katsaras J. Lipid bilayer structure determined by the simultaneous analysis of neutron and x-ray scattering data. Biophys. J. 95 (2008) 2356-2367
-
(2008)
Biophys. J.
, vol.95
, pp. 2356-2367
-
-
Kucerka, N.1
Nagle, J.F.2
Sachs, J.N.3
Feller, S.E.4
Pencer, J.5
Jackson, A.6
Katsaras, J.7
-
31
-
-
0033758069
-
Molecular dynamics simulations of lipid bilayers
-
Feller S.E. Molecular dynamics simulations of lipid bilayers. Curr. Opin. Colloid Interface Sci. 5 (2000) 217-223
-
(2000)
Curr. Opin. Colloid Interface Sci.
, vol.5
, pp. 217-223
-
-
Feller, S.E.1
-
32
-
-
36048937741
-
Short-range order and collective dynamics of DMPC bilayers: a comparison between molecular dynamics simulations, x-ray, and neutron scattering experiments
-
Hub J.S., Salditt T., Rheinstadter M.C., and de Groot B.L. Short-range order and collective dynamics of DMPC bilayers: a comparison between molecular dynamics simulations, x-ray, and neutron scattering experiments. Biophys. J. 93 (2007) 3156-3168
-
(2007)
Biophys. J.
, vol.93
, pp. 3156-3168
-
-
Hub, J.S.1
Salditt, T.2
Rheinstadter, M.C.3
de Groot, B.L.4
-
33
-
-
21244462687
-
Experimental validation of molecular dynamics simulations of lipid bilayers: a new approach
-
Benz R.W., Castro-Roman F., Tobias D.J., and White S.H. Experimental validation of molecular dynamics simulations of lipid bilayers: a new approach. Biophys. J. 88 (2005) 805-817
-
(2005)
Biophys. J.
, vol.88
, pp. 805-817
-
-
Benz, R.W.1
Castro-Roman, F.2
Tobias, D.J.3
White, S.H.4
-
34
-
-
0036667740
-
Modeling the lipid component of membranes
-
Scott H.L. Modeling the lipid component of membranes. Curr. Opin. Struct. Biol. 12 (2002) 495-502
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 495-502
-
-
Scott, H.L.1
-
35
-
-
0032614136
-
Constant surface tension simulations of lipid bilayers: The sensitivity of surface areas and compressibilities
-
Feller S.E., and Pastor R.W. Constant surface tension simulations of lipid bilayers: The sensitivity of surface areas and compressibilities. J. Chem. Phys. 111 (1999) 1281-1287
-
(1999)
J. Chem. Phys.
, vol.111
, pp. 1281-1287
-
-
Feller, S.E.1
Pastor, R.W.2
-
36
-
-
37749032412
-
Temperature dependence of structure, bending rigidity, and bilayer interactions of dioleoylphosphatidylcholine bilayers
-
Pan J., Tristram-Nagle S., Kucerka N., and Nagle J.F. Temperature dependence of structure, bending rigidity, and bilayer interactions of dioleoylphosphatidylcholine bilayers. Biophys. J. 94 (2008) 117-124
-
(2008)
Biophys. J.
, vol.94
, pp. 117-124
-
-
Pan, J.1
Tristram-Nagle, S.2
Kucerka, N.3
Nagle, J.F.4
|