Proteomics of Marburg and Ebola glycoproteins: Insights into their physicochemical similarities and irregularities

African Journal of Biotechnology

Volumn 8, Issue 17, 2009, Pages 4025-4031

  Misaki, Wayengera ^a   Henry, Kajumbula ^a   Kaddu, D Mulindwa ^a   Olobo, Joseph ^a   Wilson, Byarugaba ^a  

^a MAKERERE UNIVERSITY   (Uganda)

Author keywords

Ebola; Glycoproteins; Marburg; Proteomics; Vaccine research

Indexed keywords

VIRUS ENVELOPE PROTEIN; VIRUS GLYCOPROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; EBOLA VIRUS; GENE SEQUENCE; IMMUNOREACTIVITY; MARBURG VIRUS; NONHUMAN; PHYSICAL CHEMISTRY; PROTEOMICS;

FILOVIRIDAE; LAKE VICTORIA MARBURGVIRUS; RNA VIRUSES;

EID: 70349432676     PISSN: None     EISSN: 16845315     Source Type: Journal    
DOI: None     Document Type: Article

References (35)

1. Bachmair A, Finley D, Varshavsky A (1986). In vivo half-life of a protein is a function of its amino-terminal residue. Science 234: 179-186. [PubMed: 3018930].
2. Bamberg S, Kolesnikova L, Moller P, Klenk HD, Becker S (2005). VP24 of Marburg virus influences formation of infectious particles. J. Virol. 79: 13421-13433. (Pubitemid 41508155)
3. Bausch DG, Nichol ST, Muyembe-Tamfum JJ, Borchert M, Rollin PE, Sleurs H, Campbell P, Tshioko FK, Roth C, Colebunders R, Pirard P, Mardel S, Olinda LA, Zeller H, Tshomba A, Kulidri A, Libande ML, Mulangu S, Formenty P, Grein T, Leirs H, Braack L, Ksiazek T, Zaki S, Bowen MD, Smit SB, Leman PA, Burt FJ, Kemp A, Swanepoel R (2006). Marburg hemorrhagic fever associated with multiple genetic lineages of virus. N. Engl. J. Med., 355(9): 909-919.
4. Becker S, Klenk HD, Mühlberger E (1996). Intracellular transport and processing of the Marburg virus surface protein in vertebrate and insect cells. Virology 225: 145-155. (Pubitemid 26390060)
5. Becker S, Rinne C, Hofsass U, Klenk HD, Mühlberger E (1998). Interactions of Marburg virus nucleocapsid proteins. Virology. 249: 406-417. (Pubitemid 28460892)
6. Bowen ET, Platt GS, Lloyd G, Raymond RT, Simpson DI (1980). A comparative study of strains of Ebola virus isolated from southern Sudan and northern Zaire in 1976. J. Med. Virol. 6: 129-138.
7. Ciechanover A, Schwartz AL (1989). How are substrates recognized by the ubiquitin-mediated proteolytic system? Trends Biochem. Sci. 14: 483-488. [PubMed: 2696178]. (Pubitemid 19284345)
8. Dowell SF, Mukunu R, Ksiazek TG, Khan AS, Rollin PE, Peters CJ (1999). Transmission of Ebola hemorrhagic fever: a study of risk factors in family members, Kikwit, Democratic Republic of the Congo, 1995. J. Infect. Dis. 179 (Suppl. 1): S87-S91.
9. Edelhoch H (1967). Spectroscopic determination of tryptophan and tyrosine in proteins. Biochemistry, 6: 1948-1954. [PubMed: 6049437].
10. Feldmann H, Will C, Schikore M, Slenczka W, Klenk HD (1991). Glycosylation and oligomerization of the spike protein of Marburg virus. Virology 182: 353-355.
11. Fitch WM, Leiter JM, Li XQ, Palese P (1991). Positive Darwinian evolution in human influenza A viruses. Proc. Natl Acad Sci. USA, 88: 4270-4274.
12. Funke C, Becker S, Dartsch H, Klenk HD, Muhlberger E (1995). Acylation of the Marburg virus glycoprotein. Virology 208: 289-297
13. Geyer H, Will C, Feldmann H, Klenk HD, Geyer R (1992).Carbohydrate structure of Marburg virus glycoprotein. Glycobiology, 2: 299-312.
14. Gill SC, Hippel von, PH (1989). Calculation of protein extinction coefficients from amino acid sequence data. Anal. Biochem. 182: 319-326. [PubMed: 2610349].
15. Gonda DK, Bachmair A, Wunning I, Tobias JW, Lane WS, Varshavsky AJ (1989). Universality and structure of the N-end rule. J. Biol. Chem. 264: 16700-16712. [PubMed: 2506181].
16. Guruprasad K, Reddy BVB, Pandit MW (1990). Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Eng. 4: 155-161. [PubMed: 2075190].
17. Ikai AJ (1980). Thermostability and aliphatic index of globular proteins. J. Biochem. 88: 1895-1898. [PubMed: 7462208].
18. Khan AS, Tshioko FK, Heymann DL, Le Guenno B, Nabeth P, Kerstiëns B, Fleerackers YN, Kilmarx PH, Rodier GR, Nkuku O, Rollin PE, Sanchez A, Zaki SR, Swanepoel R, Tomori O, Nichol ST, Peters CJ, Muyembe-Tamfum JJ, Ksiazek TG, for the Commission de Lutte contre les Epidémies à Kikwit (1997). The reemergence of Ebola hemorrhagic fever, Democratic Republic of the Congo, 1995. J. Infect. Dis. 179 (Suppl. 1):S76-S86.
19. Kolesnikova L, Berghofer B, Bamberg S, Becker S (2004). Multivesicular bodies as a platform for formation of the Marburg virus envelope. J. Virol. 78: 12277-12287. (Pubitemid 39458747)
20. Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157: 105-132. [PubMed: 7108955].
21. Lenz O, Meulen Jter, Klenk HD, Seidah NG, Garten W (2001). The Lassa virus glycoprotein precursor GP-C is proteolytically processed by subtilase SKI-1/S1P. Proc. Natl. Acad. Sci. USA 98:12701-12705.
22. National Centre for Biotechnology [NCBI]. (2007). Protein database. http://www.ncbi.nlm.nih.gov/
23. Pace CN, Vajdos F, Fee L, Grimsley G, Gray T. (1995) How to measure and predict the molar absorption coefficient of a protein. Protein Sci. 11: 2411-2423. [PubMed: 8563639].
24. Sänger C, Mühlberger E, Lötfering B, Klenk HD, Becker S (2002). The Marburg virus surface protein is phosphorylated at its ectodomain. Virol. 295 :20-29 (Pubitemid 34928814)
25. Sanger C, Muhlberger E, Ryabchikova E, Kolesnikova L, Klenk HD, Becker S ( 2001). Sorting of Marburg virus surface protein and virus release take place at opposite surfaces of infected polarized epithelial cells. J. Virol. 75: 1274-1283. (Pubitemid 32094686)
26. Tobias JW, Shrader TE, Rocap G, Varshavsky A (1991). The N-end rule in bacteria. Sci. 254: 1374-1377. [PubMed: 1962196].
27. Towner JS, Khristova ML, Sealy TK, Vincent MJ, Erickson BR, Bawiec DA, Hartman AL, Comer JA, Zaki SR, Ströher U, Gomes da Silva F, del Castillo F, Rollin PE, Ksiazek TG, Nichol ST (2006). Marburg virus genomics and association with a large hemorrhagic Fever outbreak in angola. J. Virol. 80(13): 6497-6516. (Pubitemid 43927452)
28. Varmus HE, Brown PO (1989). Retroviruses, p. 53-108. In Berg DE, Howe MM (ed.), Mobile DNA. American Society for Microbiology, Washington, D.C.
29. Varshavsky A (1997). The N-end rule pathway of protein degradation. Genes Cells. 2: 13-28. [PubMed: 9112437].
30. Vladimir NM, Brian JS, Margaret LM, Michael AM, James XP, Peter SK (1999). Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9 resolution Proc. Natl. Acad. Sci. U S A, 96(6): 2662-2667.
31. Volchkov VE, Chepurnov AA, Volchkova VA, Ternovoj VA, Klenk HD (2000). Molecular characterization of guinea pig-adapted variants of Ebola virus. Virology, 277: 147-155.
32. Volchkov VE, Volchkova VA, Stroher U, Becker S, Dolnik O, Cieplik M, Garten W, Klenk HD, Feldmann H (2000). Proteolytic processing of Marburg virus glycoprotein. Virology, 268: 1-6. (Pubitemid 30131964)
33. Watanabe S, Takada A, Watanabe T, Ito H, Kida H, Kawaoka Y (2000) . Functional Importance of the coiled-coil of the Ebola virus glycoprotein. J. Virology, 74: 10194-10201. (Pubitemid 30780828)
34. WHO (2007). Marburg haemorrhagic fever in Uganda. Epidemic and pandemicresponse(EPR). 3rd AUG. http://www.who.int/csr/don/2007-08-03/en/index. html.
35. Yang ZY, Delgado R, Xu L, Todd RF, Nabel EG, Sanchez A, Nabel GJ (1998). Distinct cellular interactions of secreted and transmembrane Ebola virus glycoproteins. Science, 279: 1034-1037. (Pubitemid 28113305)