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Volumn 13, Issue 5, 2009, Pages 848-853

Estimating the number of clusters via system evolution for cluster analysis of gene expression data

Author keywords

Cluster analysis; Estimation of the number of clusters; Partitioning around medoids; System evolution

Indexed keywords

CLUSTER STRUCTURE; DATA SETS; GENE EXPRESSION DATA; MERGING PROCESS; NUMBER OF CLUSTERS; OVERLAPPING CLUSTERS; PARTITIONING AROUND MEDOIDS; STABLE EQUILIBRIUM STATE; SYSTEM EVOLUTION;

EID: 70349428495     PISSN: 10897771     EISSN: None     Source Type: Journal    
DOI: 10.1109/TITB.2009.2025119     Document Type: Article
Times cited : (13)

References (21)
  • 1
    • 70349411240 scopus 로고    scopus 로고
    • New methods for identifying significant clusters in gene expression data
    • New York City, NY, Biometrics Section
    • K. S. Pollard and M. J. Van der Laan, "New methods for identifying significant clusters in gene expression data," in Proc. Amer. Stat. Assoc., New York City, NY, 2002, Biometrics Section.
    • (2002) Proc. Amer. Stat. Assoc
    • Pollard, K.S.1    Van der Laan, M.J.2
  • 3
    • 24944539029 scopus 로고    scopus 로고
    • Consensus clustering and functional interpretation of gene expression data
    • S. Swift, A. Tucker, X. Liu, N. Martin, C. Orengo, and P. Kellam, "Consensus clustering and functional interpretation of gene expression data," Genome Biol., vol. 5, pp. R94-1-R94-16, 2004.
    • (2004) Genome Biol , vol.5
    • Swift, S.1    Tucker, A.2    Liu, X.3    Martin, N.4    Orengo, C.5    Kellam, P.6
  • 5
    • 12844278207 scopus 로고    scopus 로고
    • A MATLAB library for robust analysis
    • LIBRA
    • S. Verboven and M. Hubert, LIBRA: A MATLAB library for robust analysis. Chemometrics Intell. Lab. Syst., Vol. 75, pp. 127-136, 2005. (http://wis.kuleuven.be/stat/robust/LIBRA.html)
    • (2005) Chemometrics Intell. Lab. Syst , vol.75 , pp. 127-136
    • Verboven, S.1    Hubert, M.2
  • 6
    • 70349424471 scopus 로고    scopus 로고
    • Online, Available:, http://cran.r-project.org/2009
    • (2009). [Online]. Available: http://www.splus.com/; http:// cran.r-project. org/2009.
  • 7
    • 2342428678 scopus 로고    scopus 로고
    • Relationship-based clustering and cluster ensembles for high-dimensional data mining,
    • Ph.D. dissertation, Univ. Texas, Austin
    • A. Strehl, "Relationship-based clustering and cluster ensembles for high-dimensional data mining," Ph.D. dissertation, Univ. Texas, Austin, 2002.
    • (2002)
    • Strehl, A.1
  • 8
    • 0036011451 scopus 로고    scopus 로고
    • An examination of indexes for determining the number of cluster in binary data sets
    • E. Dimitriadou, S. Dolnicar, and A. Weingessel, "An examination of indexes for determining the number of cluster in binary data sets," Psychometrika, vol. 67, no. 1, pp. 137-160, 2002.
    • (2002) Psychometrika , vol.67 , Issue.1 , pp. 137-160
    • Dimitriadou, E.1    Dolnicar, S.2    Weingessel, A.3
  • 9
    • 33646825842 scopus 로고    scopus 로고
    • Estimating the number of clusters in DNA microarray data
    • N. Bolshakova and F. Azuaje, "Estimating the number of clusters in DNA microarray data," Methods Inf. Med., vol. 45, no. 2, pp. 153-157, 2006.
    • (2006) Methods Inf. Med , vol.45 , Issue.2 , pp. 153-157
    • Bolshakova, N.1    Azuaje, F.2
  • 10
    • 70349433272 scopus 로고    scopus 로고
    • R. Tibshirani, G. Walther, and T. Hastie. (2000). Estimating the number of clusters in a dataset via the gap statistic. JRSSB [Online]. Available: http://www-stat.stanford.edu/~tibs/research.html
    • R. Tibshirani, G. Walther, and T. Hastie. (2000). Estimating the number of clusters in a dataset via the gap statistic. JRSSB [Online]. Available: http://www-stat.stanford.edu/~tibs/research.html
  • 11
    • 0036359730 scopus 로고    scopus 로고
    • Stability based method for discovering structure in clustered data
    • A. Ben-Hur, A. Elisseeff, and I. A. Guyon, "Stability based method for discovering structure in clustered data," Pac. Symp. Biocomput., vol. 7, pp. 6-17, 2002.
    • (2002) Pac. Symp. Biocomput , vol.7 , pp. 6-17
    • Ben-Hur, A.1    Elisseeff, A.2    Guyon, I.A.3
  • 13
  • 14
    • 0037958764 scopus 로고    scopus 로고
    • Robust cluster analysis of microarray gene expression data with the number of clusters determined biologically
    • D. R. Bickel, "Robust cluster analysis of microarray gene expression data with the number of clusters determined biologically," Bioinformatics, vol. 19, no. 7, pp. 818-824, 2003.
    • (2003) Bioinformatics , vol.19 , Issue.7 , pp. 818-824
    • Bickel, D.R.1
  • 15
    • 3042686005 scopus 로고    scopus 로고
    • Bayesian mixture model based clustering of replicated microarray data
    • M. Medvedovic, K. Y. Yeung, and R. E. Bumgarner, "Bayesian mixture model based clustering of replicated microarray data," Bioinformatics, vol. 20, pp. 1222-1232, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 1222-1232
    • Medvedovic, M.1    Yeung, K.Y.2    Bumgarner, R.E.3
  • 16
    • 17944394324 scopus 로고    scopus 로고
    • Fuzzy C-means method for clustering microarray data
    • D. Dembélé and P. Kastner, "Fuzzy C-means method for clustering microarray data," Bioinformatics, vol. 19, no. 8, pp. 973-980, 2003.
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 973-980
    • Dembélé, D.1    Kastner, P.2
  • 18
    • 0034598746 scopus 로고    scopus 로고
    • A. A. Alizadeh, M. B. Eisen, R. E. Davis, C. Ma, I. S. Lossos, A. Rosenwald, J. C. Boldrick, H. Sabet, T. Tran, X. Yu, J. I. Powell, L. Yang, G. E. Marti, T. Moore, J. Hudson, Jr., L. Lu, D. B. Lewis, R. Tibshirani, G. Sherlock, W. C. Chan, T. C. Greiner, D. D. Weisenburger, J. O. Armitage, R. Warnke, R. Levy, W. Wilson, M. R. Grever, J. C. Byrd, D. Botstein, P. O. Brown, and L. M. Staudt, Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling, Nature, 403, pp. 503-511, 2000.
    • A. A. Alizadeh, M. B. Eisen, R. E. Davis, C. Ma, I. S. Lossos, A. Rosenwald, J. C. Boldrick, H. Sabet, T. Tran, X. Yu, J. I. Powell, L. Yang, G. E. Marti, T. Moore, J. Hudson, Jr., L. Lu, D. B. Lewis, R. Tibshirani, G. Sherlock, W. C. Chan, T. C. Greiner, D. D. Weisenburger, J. O. Armitage, R. Warnke, R. Levy, W. Wilson, M. R. Grever, J. C. Byrd, D. Botstein, P. O. Brown, and L. M. Staudt, "Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling," Nature, vol. 403, pp. 503-511, 2000.
  • 19
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering of tumor and normal colon tissues probed by oligonucleotide arrays
    • U. Alon, N. Barkai, D. A. Notterman, K. Gish, S. Ybarra, D. Mack, and A. J. Levine, "Broad patterns of gene expression revealed by clustering of tumor and normal colon tissues probed by oligonucleotide arrays," Proc. Nat. Acad. Sci. USA, vol. 96, no. 12, pp. 6745-6750, 1999.
    • (1999) Proc. Nat. Acad. Sci. USA , vol.96 , Issue.12 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.J.7
  • 20
    • 0034659448 scopus 로고    scopus 로고
    • An algorithm for clustering cDNAs for gene expression analysis
    • E. Hartuv, A. Schmitt, J. Lange, S. Meier-Ewert, H. Lehrach, and R. Shamir, "An algorithm for clustering cDNAs for gene expression analysis," Genomics, vol. 66, no. 3, pp. 249-256, 2000.
    • (2000) Genomics , vol.66 , Issue.3 , pp. 249-256
    • Hartuv, E.1    Schmitt, A.2    Lange, J.3    Meier-Ewert, S.4    Lehrach, H.5    Shamir, R.6
  • 21
    • 0037172724 scopus 로고    scopus 로고
    • S. Dudoit and J. Fridlyand, A prediction-based resampling method for estimating the number of clusters in a dataset, Genome Biol., 3, no. 7, pp. 0036.1-0036.21, 2002.
    • S. Dudoit and J. Fridlyand, "A prediction-based resampling method for estimating the number of clusters in a dataset," Genome Biol., vol. 3, no. 7, pp. 0036.1-0036.21, 2002.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.