Predicting disease genes of coronary artery disease based on functional consistency and network topological features

Progress in Biochemistry and Biophysics

Volumn 36, Issue 6, 2009, Pages 781-786

  Zhao, Yan ^a   Chen, Li Na ^a   Zhang, Liang Cai ^a   Wang, Qian ^a   Shang, Yu Kui ^a   Wang, Hong ^a   Wan, L I ^a  

^a HARBIN MEDICAL UNIVERSITY   (China)

Author keywords

Co located attribution; Functional consistency; Functional enrichment; Network topological features

Indexed keywords

EID: 70349199082     PISSN: 10003282     EISSN: None     Source Type: Journal    
DOI: 10.3724/SP.J.1206.2008.00623     Document Type: Article

References (13)

1. Schwikowski B, Uetz P, Fields S. A network of protein-protein interactions in yeast. Nat Biotechnol, 2000, 18(12): 1257-1261
2. Titz B, Schlesner M, Uetz P. What do we learn from high-throughput protein interaction data?. Expert Rev Proteomics, 2004, 1(1): 111-121 (Pubitemid 43826434)
3. Jonsson P F, Bates P A. Global topological features of cancer proteins in the human interactome. Bioinformatics, 2006, 22(18): 2291-2297
4. Lee D, Redfern O, Orengo C. Predicting protein function from sequence and structure. Nat Rev Mol Cell Biol, 2007, 8(12): 995-1005 (Pubitemid 350174637)
5. Oti M, Snel B, Huynen M A, et al. Predicting disease genes using protein-protein interactions. J Med Genet, 2006, 43(8): 691-698 (Pubitemid 44214908)
6. Chen J Y, Shen C, Sivachenko A Y. Mining Alzheimer disease relevant proteins from integrated protein interactome data. Pac Symp Biocomput, 2006, 11: 367-378
7. The Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nature Genet, 2000, 25: 25-29
8. Maere S, Heymans K, Kuiper M. BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics, 2005, 21(16): 3448-3449 (Pubitemid 41222459)
9. Kanehisa M, Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucl Acid Res, 2000, 28: 27-30 (Pubitemid 30047706)
10. Risch N, Merikangas K. The future of genetic studies of complex human diseases. Science, 1996, 273(5281): 1516-1517 (Pubitemid 26301653)
11. He W J, Hu Y, Zhang X P, et al. Activated protein C ratio, plasma tissue factor activity and activated factor VII in Chinese patients with coronary heart disease. Eur J Med Res, 2008, 13(2): 47-51
12. Elbatarny H S, Maurice D H. Leptin-mediated activation of human platelets: involvement of a leptin receptor and phosphodiesterase 3A-containing cellular signaling complex. Am J Physiol Endocrinol Metab, 2005, 289(4): E695-702