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Volumn 16, Issue 3, 2009, Pages 155-164

Analysis of multiple occurrences of alternative splicing events in arabidopsis thaliana using novel sequenced full-length cDNAs

Author keywords

Alternative splicing; Arabidopsis; Bioinformatics; Full length cDNA

Indexed keywords

CIS ACTING ELEMENT; COMPLEMENTARY DNA; MESSENGER RNA; TRANS ACTING FACTOR; PLANT DNA; TRANSACTIVATOR PROTEIN;

EID: 70149108635     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsp009     Document Type: Article
Times cited : (16)

References (32)
  • 1
    • 33646484347 scopus 로고    scopus 로고
    • Genomewide comparative analysis of alternative splicing in plants
    • Wang, B. B. and Brendel, V. 2006, Genomewide comparative analysis of alternative splicing in plants, Proc. Natl. Acad. Sci. USA, 103, 7175-7180.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 7175-7180
    • Wang, B.B.1    Brendel, V.2
  • 4
    • 0035999375 scopus 로고    scopus 로고
    • Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA
    • Macknight, R., Duroux, M., Laurie, R., Dijkwel, P., Simpson, G. and Dean, C. 2002, Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA, Plant Cell, 14, 877-888.
    • (2002) Plant Cell , vol.14 , pp. 877-888
    • Macknight, R.1    Duroux, M.2    Laurie, R.3    Dijkwel, P.4    Simpson, G.5    Dean, C.6
  • 5
    • 37249057805 scopus 로고    scopus 로고
    • Alternative splicing and mRNA levels of the disease resistance gene RPS4 are induced during defense responses
    • Zhang, X. C. and Gassmann, W. 2007, Alternative splicing and mRNA levels of the disease resistance gene RPS4 are induced during defense responses, Plant Physiol., 145, 1577-1587.
    • (2007) Plant Physiol , vol.145 , pp. 1577-1587
    • Zhang, X.C.1    Gassmann, W.2
  • 6
    • 33750029727 scopus 로고    scopus 로고
    • Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins
    • Kalyna, M., Lopato, S., Voronin, V. and Barta, A. 2006, Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins, Nucleic Acids Res., 34, 4395-4405.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4395-4405
    • Kalyna, M.1    Lopato, S.2    Voronin, V.3    Barta, A.4
  • 7
    • 4844222571 scopus 로고    scopus 로고
    • Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
    • Iida, K., Seki, M., Sakurai, T., Satou, M., Akiyama, K., Toyoda, T., Konagaya, A. and Shinozaki, K. 2004, Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences, Nucleic Acids Res., 32, 5096-5103.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5096-5103
    • Iida, K.1    Seki, M.2    Sakurai, T.3    Satou, M.4    Akiyama, K.5    Toyoda, T.6    Konagaya, A.7    Shinozaki, K.8
  • 8
    • 42149149278 scopus 로고    scopus 로고
    • Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis
    • Bove, J., Kim, C. Y., Gibson, C. A. and Assmann, S. M. 2008, Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis, Plant Mol. Biol., 67, 71-88.
    • (2008) Plant Mol. Biol , vol.67 , pp. 71-88
    • Bove, J.1    Kim, C.Y.2    Gibson, C.A.3    Assmann, S.M.4
  • 9
    • 34547672823 scopus 로고    scopus 로고
    • Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress
    • Tanabe, N., Yoshimura, K., Kimura, A., Yabuta, Y. and Shigeoka, S. 2007, Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress, Plant Cell Physiol., 48, 1036-1049.
    • (2007) Plant Cell Physiol , vol.48 , pp. 1036-1049
    • Tanabe, N.1    Yoshimura, K.2    Kimura, A.3    Yabuta, Y.4    Shigeoka, S.5
  • 10
    • 33847343883 scopus 로고    scopus 로고
    • Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: Regulation by hormones and stresses
    • Palusa, S. G., Ali, G. S. and Reddy, A. S. 2007, Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses, Plant J., 49, 1091-1107.
    • (2007) Plant J , vol.49 , pp. 1091-1107
    • Palusa, S.G.1    Ali, G.S.2    Reddy, A.S.3
  • 11
    • 33846467191 scopus 로고    scopus 로고
    • Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
    • Gardina, P. J., Clark, T. A., Shimada, B., et al. 2006, Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array, BMC Genomics, 7, 325.
    • (2006) BMC Genomics , vol.7 , pp. 325
    • Gardina, P.J.1    Clark, T.A.2    Shimada, B.3
  • 12
    • 20244377471 scopus 로고    scopus 로고
    • Functional annotation of a full-length Arabidopsis cDNA collection
    • Seki, M., Narusaka, M., Kamiya, A., et al. 2002, Functional annotation of a full-length Arabidopsis cDNA collection, Science, 296, 141-145.
    • (2002) Science , vol.296 , pp. 141-145
    • Seki, M.1    Narusaka, M.2    Kamiya, A.3
  • 14
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon, D., Abajian, C. and Green, P. 1998, Consed: a graphical tool for sequence finishing, Genome Res., 8, 195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 16
    • 2442690356 scopus 로고    scopus 로고
    • Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus
    • Brendel, V., Xing, L. and Zhu, W. 2004, Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus, Bioinformatics, 20, 1157-1169.
    • (2004) Bioinformatics , vol.20 , pp. 1157-1169
    • Brendel, V.1    Xing, L.2    Zhu, W.3
  • 17
    • 40849086257 scopus 로고    scopus 로고
    • Alternative splicing at NAGNAG acceptor sites shares common properties in land plants and mammals
    • Iida, K., Shionyu, M. and Suso, Y. 2008, Alternative splicing at NAGNAG acceptor sites shares common properties in land plants and mammals, Mol. Biol. Evol., 25, 709-718.
    • (2008) Mol. Biol. Evol , vol.25 , pp. 709-718
    • Iida, K.1    Shionyu, M.2    Suso, Y.3
  • 18
    • 38549144806 scopus 로고    scopus 로고
    • The Arabidopsis information resource (TAIR): Gene structure and function annotation
    • Swarbreck, D., Wilks, C., Lamesch, P., et al. 2008, The Arabidopsis information resource (TAIR): gene structure and function annotation, Nucleic Acids Res., 36, D1009-D1014.
    • (2008) Nucleic Acids Res , vol.36
    • Swarbreck, D.1    Wilks, C.2    Lamesch, P.3
  • 21
    • 34547624125 scopus 로고    scopus 로고
    • Babushok, D. V., Ohshima, K., Ostertag, E. M., Chen, X., Wang, Y., Mandal, P. K., Okada, N., Abrams, C. S. and Kazazian, H. H. Jr 2007, A novel testis ubiquitin-binding protein gene arose by exon shuffling in homi-noids, Genome Res., 17, 1129-1138.
    • Babushok, D. V., Ohshima, K., Ostertag, E. M., Chen, X., Wang, Y., Mandal, P. K., Okada, N., Abrams, C. S. and Kazazian, H. H. Jr 2007, A novel testis ubiquitin-binding protein gene arose by exon shuffling in homi-noids, Genome Res., 17, 1129-1138.
  • 24
    • 6944222929 scopus 로고    scopus 로고
    • Plant serine/arginine-rich proteins and their role in pre-mRNA splicing
    • Reddy, A. S. 2004, Plant serine/arginine-rich proteins and their role in pre-mRNA splicing, Trends Plant Sci., 9, 541-547.
    • (2004) Trends Plant Sci , vol.9 , pp. 541-547
    • Reddy, A.S.1
  • 25
    • 4344662645 scopus 로고    scopus 로고
    • A plethora of plant serine/arginine-rich proteins: Redundancy or evolution of novel gene functions?
    • Kalyna, M. and Barta, A. 2004, A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions?, Biochem. Soc. Trans., 32, 561-564.
    • (2004) Biochem. Soc. Trans , vol.32 , pp. 561-564
    • Kalyna, M.1    Barta, A.2
  • 26
    • 34247200577 scopus 로고    scopus 로고
    • The At Gen Express global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
    • Kilian, J., Whitehead, D., Horak, J., Wanke, D., Weinl, S., Batistic, O., D'Angelo, C., Bornberg-Bauer, E., Kudla, J. and Harter, K. 2007, The At Gen Express global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses, Plant J., 50, 347-363.
    • (2007) Plant J , vol.50 , pp. 347-363
    • Kilian, J.1    Whitehead, D.2    Horak, J.3    Wanke, D.4    Weinl, S.5    Batistic, O.6    D'Angelo, C.7    Bornberg-Bauer, E.8    Kudla, J.9    Harter, K.10
  • 27
    • 34547659870 scopus 로고    scopus 로고
    • Context analysis of termination codons in mRNA that are recognized by plant NMD
    • Hori, K. and Watanabe, Y. 2007, Context analysis of termination codons in mRNA that are recognized by plant NMD, Plant Cell Physiol., 48, 1072-1078.
    • (2007) Plant Cell Physiol , vol.48 , pp. 1072-1078
    • Hori, K.1    Watanabe, Y.2
  • 28
    • 33646593160 scopus 로고    scopus 로고
    • Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants
    • Iida, K. and Go, M. 2006, Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants, Mol. Biol. Evol., 23, 1085-1094.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 1085-1094
    • Iida, K.1    Go, M.2
  • 29
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis, B. P., Green, R. E. and Brenner, S. E. 2003, Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans, Proc. Natl. Acad. Sci. USA, 100, 189-192.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 30
    • 39149126359 scopus 로고    scopus 로고
    • Alternative splicing and protein structure evolution
    • Birzele, F., Csaba, G. and Zimmer, R. 2008, Alternative splicing and protein structure evolution, Nucleic Acids Res., 36, 550-558.
    • (2008) Nucleic Acids Res , vol.36 , pp. 550-558
    • Birzele, F.1    Csaba, G.2    Zimmer, R.3
  • 31
    • 0028568602 scopus 로고
    • Eukaryotic translation elongation factor 1 gamma contains a glutathione transferase domain - study of a diverse, ancient protein superfamily using motif search and structural modeling
    • Koonin, E. V., Mushegian, A. R., Tatusov, R. L., Altschul, S. F., Bryant, S. H., Bork, P. and Valencia, A. 1994, Eukaryotic translation elongation factor 1 gamma contains a glutathione transferase domain - study of a diverse, ancient protein superfamily using motif search and structural modeling, Protein Sci., 3, 2045-2054.
    • (1994) Protein Sci , vol.3 , pp. 2045-2054
    • Koonin, E.V.1    Mushegian, A.R.2    Tatusov, R.L.3    Altschul, S.F.4    Bryant, S.H.5    Bork, P.6    Valencia, A.7
  • 32
    • 0037200122 scopus 로고    scopus 로고
    • The intermolecular interaction between the PH domain and the C-terminal domain of Arabidopsis dynamin-like 6 determines lipid binding specificity
    • Lee, S. H., Jin, J. B., Song, J., Min, M. K., Park, D. S., Kim, Y. W. and Hwang, I. 2002, The intermolecular interaction between the PH domain and the C-terminal domain of Arabidopsis dynamin-like 6 determines lipid binding specificity, J. Biol. Chem., 277, 31842-31849.
    • (2002) J. Biol. Chem , vol.277 , pp. 31842-31849
    • Lee, S.H.1    Jin, J.B.2    Song, J.3    Min, M.K.4    Park, D.S.5    Kim, Y.W.6    Hwang, I.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.