메뉴 건너뛰기




Volumn 4, Issue 9, 2009, Pages

Genome-wide analysis of small RNA and novel microRNA discovery in human acute lymphoblastic leukemia based on extensive sequencing approach

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 1832; MICRORNA 1834; MICRORNA 1836; MICRORNA 1841; MICRORNA 1842; MICRORNA 1845; MICRORNA 1851; MICRORNA 1852; MICRORNA 1855; MICRORNA 1859; MICRORNA 1866; MICRORNA 1872; MICRORNA 1876; MICRORNA 1886; MICRORNA 1889; MICRORNA 1890; MICRORNA 1893; MICRORNA 1896; MICRORNA 1901; MICRORNA 1902; MICRORNA 1906; MICRORNA 1909; MICRORNA 1911; MICRORNA 1915; MICRORNA 1931; MICRORNA 1943; MICRORNA 1971; MICRORNA 1987; UNCLASSIFIED DRUG; RNA;

EID: 70149095956     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0006849     Document Type: Article
Times cited : (42)

References (54)
  • 2
    • 14844364472 scopus 로고    scopus 로고
    • Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis
    • Cheng AM, Byrom MW, Shelton J, Ford LP (2005) Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis. Nucleic Acids Res 33: 1290-1297.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1290-1297
    • Cheng, A.M.1    Byrom, M.W.2    Shelton, J.3    Ford, L.P.4
  • 3
    • 33747876113 scopus 로고    scopus 로고
    • MicroRNA-cancer connection: The beginning of a new tale
    • Calin GA, Croce CM (2006) MicroRNA-cancer connection: the beginning of a new tale. Cancer Res 66: 7390-7394.
    • (2006) Cancer Res , vol.66 , pp. 7390-7394
    • Calin, G.A.1    Croce, C.M.2
  • 4
    • 12144290519 scopus 로고    scopus 로고
    • Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers
    • Calin GA, Sevignani C, Dumitru CD, Hyslop T, Noch E, et al. (2004) Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proc Natl Acad Sci U S A 101: 2999-3004.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 2999-3004
    • Calin, G.A.1    Sevignani, C.2    Dumitru, C.D.3    Hyslop, T.4    Noch, E.5
  • 5
    • 33846188098 scopus 로고    scopus 로고
    • microRNAs as oncogenes and tumor suppressors
    • Zhang B, Pan X, Cobb GP, Anderson TA (2007) microRNAs as oncogenes and tumor suppressors. Dev Biol 302: 1-12.
    • (2007) Dev Biol , vol.302 , pp. 1-12
    • Zhang, B.1    Pan, X.2    Cobb, G.P.3    Anderson, T.A.4
  • 6
    • 27244432205 scopus 로고    scopus 로고
    • MicroRNAs as oncogenes and tumor suppressors
    • Chen CZ (2005) MicroRNAs as oncogenes and tumor suppressors. N Engl J Med 353: 1768-1771.
    • (2005) N Engl J Med , vol.353 , pp. 1768-1771
    • Chen, C.Z.1
  • 7
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs - microRNAs with a role in cancer
    • Esquela-Kerscher A, Slack FJ (2006) Oncomirs - microRNAs with a role in cancer. Nat Rev Cancer 6: 259-269.
    • (2006) Nat Rev Cancer , vol.6 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 8
    • 54349104464 scopus 로고    scopus 로고
    • Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
    • Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev 22: 2773-2785.
    • (2008) Genes Dev , vol.22 , pp. 2773-2785
    • Babiarz, J.E.1    Ruby, J.G.2    Wang, Y.3    Bartel, D.P.4    Blelloch, R.5
  • 9
    • 33749377869 scopus 로고    scopus 로고
    • Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    • Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, et al. (2006) Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. Genome Res 16: 1289-1298.
    • (2006) Genome Res , vol.16 , pp. 1289-1298
    • Berezikov, E.1    van Tetering, G.2    Verheul, M.3    van de Belt, J.4    van Laake, L.5
  • 10
    • 44849106063 scopus 로고    scopus 로고
    • A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    • Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al. (2008) A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 18: 957-964.
    • (2008) Genome Res , vol.18 , pp. 957-964
    • Glazov, E.A.1    Cottee, P.A.2    Barris, W.C.3    Moore, R.J.4    Dalrymple, B.P.5
  • 11
    • 34250877841 scopus 로고    scopus 로고
    • A mammalian microRNA expression atlas based on small RNA library sequencing
    • Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, et al. (2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401-1414.
    • (2007) Cell , vol.129 , pp. 1401-1414
    • Landgraf, P.1    Rusu, M.2    Sheridan, R.3    Sewer, A.4    Iovino, N.5
  • 12
    • 34447134869 scopus 로고    scopus 로고
    • Patterns of known and novel small RNAs in human cervical cancer
    • Lui WO, Pourmand N, Patterson BK, Fire A (2007) Patterns of known and novel small RNAs in human cervical cancer. Cancer Res 67: 6031-6043.
    • (2007) Cancer Res , vol.67 , pp. 6031-6043
    • Lui, W.O.1    Pourmand, N.2    Patterson, B.K.3    Fire, A.4
  • 13
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, et al. (2006) Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127: 1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5
  • 14
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 18: 610-621.
    • (2008) Genome Res , vol.18 , pp. 610-621
    • Morin, R.D.1    O'Connor, M.D.2    Griffith, M.3    Kuchenbauer, F.4    Delaney, A.5
  • 15
    • 39149134593 scopus 로고    scopus 로고
    • Small RNAs analysis in CLL reveals a deregulation of miRNA expression and novel miRNA candidates of putative relevance in CLL pathogenesis
    • Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, et al. (2008) Small RNAs analysis in CLL reveals a deregulation of miRNA expression and novel miRNA candidates of putative relevance in CLL pathogenesis. Leukemia 22: 330-338.
    • (2008) Leukemia , vol.22 , pp. 330-338
    • Marton, S.1    Garcia, M.R.2    Robello, C.3    Persson, H.4    Trajtenberg, F.5
  • 17
    • 55549129277 scopus 로고    scopus 로고
    • In-depth characterization of the microRNA transcriptome in a leukemia progression model
    • Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, et al. (2008) In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Res 18: 1787-1797.
    • (2008) Genome Res , vol.18 , pp. 1787-1797
    • Kuchenbauer, F.1    Morin, R.D.2    Argiropoulos, B.3    Petriv, O.I.4    Griffith, M.5
  • 18
    • 40749150603 scopus 로고    scopus 로고
    • Acute lymphoblastic leukaemia
    • Pui CH, Robison LL, Look AT (2008) Acute lymphoblastic leukaemia. Lancet 371: 1030-1043.
    • (2008) Lancet , vol.371 , pp. 1030-1043
    • Pui, C.H.1    Robison, L.L.2    Look, A.T.3
  • 19
    • 0141675132 scopus 로고    scopus 로고
    • The biology and therapy of adult acute lymphoblastic leukemia
    • Faderl S, Jeha S, Kantarjian HM (2003) The biology and therapy of adult acute lymphoblastic leukemia. Cancer 98: 1337-1354.
    • (2003) Cancer , vol.98 , pp. 1337-1354
    • Faderl, S.1    Jeha, S.2    Kantarjian, H.M.3
  • 20
    • 0036464595 scopus 로고    scopus 로고
    • Double-delayed intensification improves event-free survival for children with intermediate-risk acute lymphoblastic leukemia: A report from the Children's Cancer Group
    • Lange BJ, Bostrom BC, Cherlow JM, Sensel MG, La MK, et al. (2002) Double-delayed intensification improves event-free survival for children with intermediate-risk acute lymphoblastic leukemia: a report from the Children's Cancer Group. Blood 99: 825-833.
    • (2002) Blood , vol.99 , pp. 825-833
    • Lange, B.J.1    Bostrom, B.C.2    Cherlow, J.M.3    Sensel4    MG, L.M.5
  • 21
    • 0038811747 scopus 로고    scopus 로고
    • Intensification of therapy for children with lower-risk acute lymphoblastic leukemia: Long-term follow-up of patients treated on Children's Cancer Group Trial 1881
    • Hutchinson RJ, Gaynon PS, Sather H, Bertolone SJ, Cooper HA, et al. (2003) Intensification of therapy for children with lower-risk acute lymphoblastic leukemia: long-term follow-up of patients treated on Children's Cancer Group Trial 1881. J Clin Oncol 21: 1790-1797.
    • (2003) J Clin Oncol , vol.21 , pp. 1790-1797
    • Hutchinson, R.J.1    Gaynon, P.S.2    Sather, H.3    Bertolone, S.J.4    Cooper, H.A.5
  • 22
    • 0038264383 scopus 로고    scopus 로고
    • Dexamethasone versus prednisone and daily oral versus weekly intravenous mercaptopurine for patients with standard-risk acute lymphoblastic leukemia: A report from the Children's Cancer Group
    • Bostrom BC, Sensel MR, Sather HN, Gaynon PS, La MK, et al. (2003) Dexamethasone versus prednisone and daily oral versus weekly intravenous mercaptopurine for patients with standard-risk acute lymphoblastic leukemia: a report from the Children's Cancer Group. Blood 101: 3809-3817.
    • (2003) Blood , vol.101 , pp. 3809-3817
    • Bostrom, B.C.1    Sensel, M.R.2    Sather, H.N.3    Gaynon4    PS, L.M.5
  • 23
    • 40749099021 scopus 로고    scopus 로고
    • Current management and challenges of malignant disease in the CNS in paediatric leukaemia
    • Pui CH, Howard SC (2008) Current management and challenges of malignant disease in the CNS in paediatric leukaemia. Lancet Oncol 9: 257-268.
    • (2008) Lancet Oncol , vol.9 , pp. 257-268
    • Pui, C.H.1    Howard, S.C.2
  • 24
    • 60149100762 scopus 로고    scopus 로고
    • Identification of new microRNA genes and aberrant microRNA profiles in childhood acute lymphoblastic leukemia
    • Schotte D, Chau JC, Sylvester G, Liu G, Chen C, et al. (2009) Identification of new microRNA genes and aberrant microRNA profiles in childhood acute lymphoblastic leukemia. Leukemia 23: 313-322.
    • (2009) Leukemia , vol.23 , pp. 313-322
    • Schotte, D.1    Chau, J.C.2    Sylvester, G.3    Liu, G.4    Chen, C.5
  • 25
    • 20444460289 scopus 로고    scopus 로고
    • MicroRNA expression profiles classify human cancers
    • Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, et al. (2005) MicroRNA expression profiles classify human cancers. Nature 435: 834-838.
    • (2005) Nature , vol.435 , pp. 834-838
    • Lu, J.1    Getz, G.2    Miska, E.A.3    Alvarez-Saavedra, E.4    Lamb, J.5
  • 26
    • 38049123402 scopus 로고    scopus 로고
    • MicroRNA expression signatures accurately discriminate acute lymphoblastic leukemia from acute myeloid leukemia
    • Mi S, Lu J, Sun M, Li Z, Zhang H, et al. (2007) MicroRNA expression signatures accurately discriminate acute lymphoblastic leukemia from acute myeloid leukemia. Proc Natl Acad Sci U S A 104: 19971-19976.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 19971-19976
    • Mi, S.1    Lu, J.2    Sun, M.3    Li, Z.4    Zhang, H.5
  • 28
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 30
    • 41649089309 scopus 로고    scopus 로고
    • The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution
    • Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, et al. (2008) The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution. Nat Struct Mol Biol 15: 354-363.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 354-363
    • Okamura, K.1    Phillips, M.D.2    Tyler, D.M.3    Duan, H.4    Chou, Y.T.5
  • 31
    • 10244243802 scopus 로고    scopus 로고
    • Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
    • Bonnet E, Wuyts J, Rouze P, Van de Peer Y (2004) Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20: 2911-2917.
    • (2004) Bioinformatics , vol.20 , pp. 2911-2917
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van de Peer, Y.4
  • 32
    • 17844391015 scopus 로고    scopus 로고
    • Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency
    • Clote P, Ferre F, Kranakis E, Krizanc D (2005) Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency. Rna 11: 578-591.
    • (2005) Rna , vol.11 , pp. 578-591
    • Clote, P.1    Ferre, F.2    Kranakis, E.3    Krizanc, D.4
  • 36
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 37
    • 33746274670 scopus 로고    scopus 로고
    • Comprehensive thermodynamic analysis of 39 double-nucleotide overhangs neighboring Watson-Crick terminal base pairs
    • O'Toole AS, Miller S, Haines N, Zink MC, Serra MJ (2006) Comprehensive thermodynamic analysis of 39 double-nucleotide overhangs neighboring Watson-Crick terminal base pairs. Nucleic Acids Res 34: 3338-3344.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3338-3344
    • O'Toole, A.S.1    Miller, S.2    Haines, N.3    Zink, M.C.4    Serra, M.J.5
  • 39
    • 38349081145 scopus 로고    scopus 로고
    • Argonaute loading improves the 5′ precision of both MicroRNAs and their miRNA strands in flies
    • Seitz H, Ghildiyal M, Zamore PD (2008) Argonaute loading improves the 5′ precision of both MicroRNAs and their miRNA strands in flies. Curr Biol 18: 147-151.
    • (2008) Curr Biol , vol.18 , pp. 147-151
    • Seitz, H.1    Ghildiyal, M.2    Zamore, P.D.3
  • 40
    • 33947166799 scopus 로고    scopus 로고
    • Expression of apoptosis regulators Bcl-2 and Bax in childhood acute lymphoblastic leukemia
    • Narayan S, Chandra J, Sharma M, Naithani R, Sharma S (2007) Expression of apoptosis regulators Bcl-2 and Bax in childhood acute lymphoblastic leukemia. Hematology 12: 39-43.
    • (2007) Hematology , vol.12 , pp. 39-43
    • Narayan, S.1    Chandra, J.2    Sharma, M.3    Naithani, R.4    Sharma, S.5
  • 41
    • 23044517113 scopus 로고    scopus 로고
    • Abnormalities of the P53, MDM2, BCL2 and BAX genes in acute leukemias
    • Wojcik I, Szybka M, Golanska E, Rieske P, Blonski JZ, et al. (2005) Abnormalities of the P53, MDM2, BCL2 and BAX genes in acute leukemias. Neoplasma 52: 318-324.
    • (2005) Neoplasma , vol.52 , pp. 318-324
    • Wojcik, I.1    Szybka, M.2    Golanska, E.3    Rieske, P.4    Blonski, J.Z.5
  • 42
  • 43
    • 52649171336 scopus 로고    scopus 로고
    • The subcellular Sox11 distribution pattern identifies subsets of mantle cell lymphoma: Correlation to overall survival
    • Wang X, Asplund AC, Porwit A, Flygare J, Smith CI, et al. (2008) The subcellular Sox11 distribution pattern identifies subsets of mantle cell lymphoma: correlation to overall survival. Br J Haematol 143: 248-252.
    • (2008) Br J Haematol , vol.143 , pp. 248-252
    • Wang, X.1    Asplund, A.C.2    Porwit, A.3    Flygare, J.4    Smith, C.I.5
  • 44
    • 33845715104 scopus 로고    scopus 로고
    • The establishment of neuronal properties is controlled by Sox4 and Sox11
    • Bergsland M, Werme M, Malewicz M, Perlmann T, Muhr J (2006) The establishment of neuronal properties is controlled by Sox4 and Sox11. Genes Dev 20: 3475-3486.
    • (2006) Genes Dev , vol.20 , pp. 3475-3486
    • Bergsland, M.1    Werme, M.2    Malewicz, M.3    Perlmann, T.4    Muhr, J.5
  • 45
    • 0037440152 scopus 로고    scopus 로고
    • Toward optimal central nervous system-directed treatment in childhood acute lymphoblastic leukemia
    • Pui CH (2003) Toward optimal central nervous system-directed treatment in childhood acute lymphoblastic leukemia. J Clin Oncol 21: 179-181.
    • (2003) J Clin Oncol , vol.21 , pp. 179-181
    • Pui, C.H.1
  • 46
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7: 986-995.
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 48
  • 49
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 50
    • 0038522873 scopus 로고    scopus 로고
    • GeneMerge-post-genomic analysis, data mining, and hypothesis testing
    • Castillo-Davis CI, Hartl DL (2003) GeneMerge-post-genomic analysis, data mining, and hypothesis testing. Bioinformatics 19: 891-892.
    • (2003) Bioinformatics , vol.19 , pp. 891-892
    • Castillo-Davis, C.I.1    Hartl, D.L.2
  • 51
    • 33644756532 scopus 로고    scopus 로고
    • A genome-wide map of conserved microRNA targets in C. elegans
    • Lall S, Grun D, Krek A, Chen K, Wang YL, et al. (2006) A genome-wide map of conserved microRNA targets in C. elegans. Curr Biol 16: 460-471.
    • (2006) Curr Biol , vol.16 , pp. 460-471
    • Lall, S.1    Grun, D.2    Krek, A.3    Chen, K.4    Wang, Y.L.5
  • 52
    • 0037311919 scopus 로고    scopus 로고
    • TM4: A free, open-source system for microarray data management and analysis
    • Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1    Sharov, V.2    White, J.3    Li, J.4    Liang, W.5
  • 54
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.