메뉴 건너뛰기




Volumn 2, Issue 2, 2009, Pages 113-118

Recent relaxation of purifying selection on the tandem-repetitive early-stage histone H3 gene in brooding sea stars

Author keywords

Echinoderms; Forcipulatida; Larval habitat; Multigene family; Nonsynonymous substitutions; Sea stars

Indexed keywords

ASTEROIDEA; ECHINODERMATA; FORCIPULATIDA;

EID: 70049113796     PISSN: 18747787     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.margen.2009.06.002     Document Type: Article
Times cited : (6)

References (35)
  • 1
    • 0023718158 scopus 로고
    • Histone genes in three sea star species: cluster arrangement, transcriptional polarity, and analyses of the flanking regions of H3 and H4 genes
    • Cool D., Banfield D., Honda B.M., and Smith M.J. Histone genes in three sea star species: cluster arrangement, transcriptional polarity, and analyses of the flanking regions of H3 and H4 genes. J. Mol. Evol. 27 (1988) 36-44
    • (1988) J. Mol. Evol. , vol.27 , pp. 36-44
    • Cool, D.1    Banfield, D.2    Honda, B.M.3    Smith, M.J.4
  • 3
    • 0035121452 scopus 로고    scopus 로고
    • Wnt gene expression in sea urchin development: heterochronies associated with the evolution of developmental mode
    • Ferkowicz M.J., and Raff R.A. Wnt gene expression in sea urchin development: heterochronies associated with the evolution of developmental mode. Evol. Dev. 3 (2001) 24-33
    • (2001) Evol. Dev. , vol.3 , pp. 24-33
    • Ferkowicz, M.J.1    Raff, R.A.2
  • 4
    • 0347996078 scopus 로고    scopus 로고
    • Invertebrate species with nonpelagic larvae have elevated levels of nonsynonymous substitutions and reduced nucleotide diversities
    • Foltz D.W. Invertebrate species with nonpelagic larvae have elevated levels of nonsynonymous substitutions and reduced nucleotide diversities. J. Mol. Evol. 57 (2003) 607-612
    • (2003) J. Mol. Evol. , vol.57 , pp. 607-612
    • Foltz, D.W.1
  • 5
    • 36148984878 scopus 로고    scopus 로고
    • An ancient repeat sequence in the ATP synthase β subunit gene of forcipulate sea stars
    • Foltz D.W. An ancient repeat sequence in the ATP synthase β subunit gene of forcipulate sea stars. J. Mol. Evol. 65 (2007) 564-573
    • (2007) J. Mol. Evol. , vol.65 , pp. 564-573
    • Foltz, D.W.1
  • 6
    • 4544357357 scopus 로고    scopus 로고
    • Apparent selection intensity for the cytochrome oxidase subunit I gene varies with mode of reproduction in echinoderms
    • Foltz D.W., Hrincevich A.W., and Rocha-Olivares A. Apparent selection intensity for the cytochrome oxidase subunit I gene varies with mode of reproduction in echinoderms. Genetica 122 (2004) 115-125
    • (2004) Genetica , vol.122 , pp. 115-125
    • Foltz, D.W.1    Hrincevich, A.W.2    Rocha-Olivares, A.3
  • 7
    • 34548229844 scopus 로고    scopus 로고
    • Primers for the amplification of nuclear introns in sea stars of the family Asteriidae
    • Foltz D.W., Nguyen A.T., Nguyen I., and Kiger J.R. Primers for the amplification of nuclear introns in sea stars of the family Asteriidae. Mol. Ecol. Notes 7 (2007) 874-876
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 874-876
    • Foltz, D.W.1    Nguyen, A.T.2    Nguyen, I.3    Kiger, J.R.4
  • 8
    • 34247559050 scopus 로고    scopus 로고
    • Combined mitochondrial and nuclear sequences support the monophyly of forcipulatacean sea stars
    • Foltz D.W., Bolton M.T., Kelley S.P., Kelley B.D., and Nguyen A.T. Combined mitochondrial and nuclear sequences support the monophyly of forcipulatacean sea stars. Mol. Phylogenet. Evol. 43 (2007) 627-634
    • (2007) Mol. Phylogenet. Evol. , vol.43 , pp. 627-634
    • Foltz, D.W.1    Bolton, M.T.2    Kelley, S.P.3    Kelley, B.D.4    Nguyen, A.T.5
  • 9
    • 42449160939 scopus 로고    scopus 로고
    • Pleistocene speciation of sister taxa in a north Pacific clade of brooding sea stars (Leptasterias)
    • Foltz D.W., Nguyen A.T., Kiger J.R., and Mah C.L. Pleistocene speciation of sister taxa in a north Pacific clade of brooding sea stars (Leptasterias). Mar. Biol. 154 (2008) 593-602
    • (2008) Mar. Biol. , vol.154 , pp. 593-602
    • Foltz, D.W.1    Nguyen, A.T.2    Kiger, J.R.3    Mah, C.L.4
  • 10
    • 33750997047 scopus 로고    scopus 로고
    • Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods
    • Friedman R., and Hughes A.L. Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods. Mol. Phylogenet. Evol. 42 (2007) 388-393
    • (2007) Mol. Phylogenet. Evol. , vol.42 , pp. 388-393
    • Friedman, R.1    Hughes, A.L.2
  • 11
    • 0029035295 scopus 로고
    • Tandem genes and clustered genes
    • Graham G.J. Tandem genes and clustered genes. J. Theor. Biol. 175 (1995) 71-87
    • (1995) J. Theor. Biol. , vol.175 , pp. 71-87
    • Graham, G.J.1
  • 12
    • 15444342531 scopus 로고
    • Organization and unusual expression of histone genes in the sea star Pisaster ochraceus
    • Howell A.M., Cool D., Hewitt J., Ydenberg B., Smith M.J., and Honda B.M. Organization and unusual expression of histone genes in the sea star Pisaster ochraceus. J. Mol. Evol. 25 (1987) 29-36
    • (1987) J. Mol. Evol. , vol.25 , pp. 29-36
    • Howell, A.M.1    Cool, D.2    Hewitt, J.3    Ydenberg, B.4    Smith, M.J.5    Honda, B.M.6
  • 13
    • 55549133631 scopus 로고    scopus 로고
    • Life history of the Antarctic sea star Labidiaster annulatus (Asteroidea: Labidiasteridae) revealed by DNA barcoding
    • Janosik A.M., Mahon A.R., Scheltema R.S., and Halanych K.M. Life history of the Antarctic sea star Labidiaster annulatus (Asteroidea: Labidiasteridae) revealed by DNA barcoding. Antarct. Sci. 20 (2008) 563-564
    • (2008) Antarct. Sci. , vol.20 , pp. 563-564
    • Janosik, A.M.1    Mahon, A.R.2    Scheltema, R.S.3    Halanych, K.M.4
  • 14
    • 0035040671 scopus 로고    scopus 로고
    • Elevated rates of nonsynonymous substitution in island birds
    • Johnson K.P., and Seger J. Elevated rates of nonsynonymous substitution in island birds. Mol. Biol. Evol. 18 (2001) 874-881
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 874-881
    • Johnson, K.P.1    Seger, J.2
  • 15
    • 35748935074 scopus 로고    scopus 로고
    • Contrasting patterns of synonymous and nonsynonymous sequence evolution in asexual and sexual freshwater snail lineages
    • Johnson S.G., and Howard R.S. Contrasting patterns of synonymous and nonsynonymous sequence evolution in asexual and sexual freshwater snail lineages. Evolution 61 (2007) 2728-2735
    • (2007) Evolution , vol.61 , pp. 2728-2735
    • Johnson, S.G.1    Howard, R.S.2
  • 16
    • 0030925519 scopus 로고    scopus 로고
    • Rapid evolution in a conserved gene family. Evolution of the actin gene family in the sea urchin genus Heliocidaris and related genera
    • Kissinger J.C., Hahn J.H., and Raff R.A. Rapid evolution in a conserved gene family. Evolution of the actin gene family in the sea urchin genus Heliocidaris and related genera. Mol. Biol. Evol. 14 (1997) 654-665
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 654-665
    • Kissinger, J.C.1    Hahn, J.H.2    Raff, R.A.3
  • 17
    • 0035992084 scopus 로고    scopus 로고
    • Gene expression and larval evolution: changing roles of distal-less and orthodenticle in echinoderm larvae
    • Lowe C.J., Issel-Tarver L., and Wray G.A. Gene expression and larval evolution: changing roles of distal-less and orthodenticle in echinoderm larvae. Evol. Dev. 4 (2002) 111-123
    • (2002) Evol. Dev. , vol.4 , pp. 111-123
    • Lowe, C.J.1    Issel-Tarver, L.2    Wray, G.A.3
  • 18
    • 0242407193 scopus 로고    scopus 로고
    • Phylogenomics of the nucleosome
    • Malik H.S., and Henikoff S. Phylogenomics of the nucleosome. Nat. Struct. Biol. 10 (2003) 882-891
    • (2003) Nat. Struct. Biol. , vol.10 , pp. 882-891
    • Malik, H.S.1    Henikoff, S.2
  • 19
  • 20
    • 0034859872 scopus 로고    scopus 로고
    • Larval and life-cycle patterns in echinoderms
    • McEdward L.R., and Miner B.G. Larval and life-cycle patterns in echinoderms. Can. J. Zool. 79 (2001) 1125-1170
    • (2001) Can. J. Zool. , vol.79 , pp. 1125-1170
    • McEdward, L.R.1    Miner, B.G.2
  • 21
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei M., and Rooney A.P. Concerted and birth-and-death evolution of multigene families. Annu. Rev. Genet. 39 (2005) 121-152
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 22
    • 0024368907 scopus 로고
    • The mutational load of a multigene family with uniform members
    • Ohta T. The mutational load of a multigene family with uniform members. Genet. Res. 53 (1989) 141-145
    • (1989) Genet. Res. , vol.53 , pp. 141-145
    • Ohta, T.1
  • 23
    • 33144483078 scopus 로고    scopus 로고
    • Transitions to asexuality result in excess amino acid substitutions
    • Paland S., and Lynch M. Transitions to asexuality result in excess amino acid substitutions. Science 311 (2006) 990-992
    • (2006) Science , vol.311 , pp. 990-992
    • Paland, S.1    Lynch, M.2
  • 24
    • 0036094816 scopus 로고    scopus 로고
    • Purifying selection and birth-and-death evolution in the histone H4 gene family
    • Piontkivska H., Rooney A.P., and Nei M. Purifying selection and birth-and-death evolution in the histone H4 gene family. Mol. Biol. Evol. 19 (2002) 689-697
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 689-697
    • Piontkivska, H.1    Rooney, A.P.2    Nei, M.3
  • 25
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests
    • Posada D., and Buckley T.R. Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 53 (2004) 793-808
    • (2004) Syst. Biol. , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 27
    • 0033011362 scopus 로고    scopus 로고
    • A novel ontogenetic pathway in hybrid embryos between species with different modes of development
    • Raff E.C., Popodi E.M., Sly B.J., Turner F.R., Villinski J.T., and Raff R.A. A novel ontogenetic pathway in hybrid embryos between species with different modes of development. Development 126 (1999) 1937-1945
    • (1999) Development , vol.126 , pp. 1937-1945
    • Raff, E.C.1    Popodi, E.M.2    Sly, B.J.3    Turner, F.R.4    Villinski, J.T.5    Raff, R.A.6
  • 28
    • 34250181983 scopus 로고    scopus 로고
    • Evolution of direct-developing larvae: selection vs loss
    • Smith M.S., Zigler K.S., and Raff R.A. Evolution of direct-developing larvae: selection vs loss. BioEssays 29 (2007) 566-571
    • (2007) BioEssays , vol.29 , pp. 566-571
    • Smith, M.S.1    Zigler, K.S.2    Raff, R.A.3
  • 29
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web-servers
    • Stamatakis A., Hoover P., and Rougemont J. A rapid bootstrap algorithm for the RAxML web-servers. Syst. Biol. 75 (2008) 758-771
    • (2008) Syst. Biol. , vol.75 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 30
    • 22344458354 scopus 로고    scopus 로고
    • Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins Heliocidaris tuberculata and H. erythrogramma
    • Wilson K.A., Andrews M.E., and Raff R.A. Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins Heliocidaris tuberculata and H. erythrogramma. Evol. Dev. 7 (2005) 401-415
    • (2005) Evol. Dev. , vol.7 , pp. 401-415
    • Wilson, K.A.1    Andrews, M.E.2    Raff, R.A.3
  • 31
    • 27244456236 scopus 로고    scopus 로고
    • Population size and molecular evolution on islands
    • Woolfit M., and Bromham L. Population size and molecular evolution on islands. Proc. R. Soc. Lond., B Biol. Sci. 272 (2005) 2277-2282
    • (2005) Proc. R. Soc. Lond., B Biol. Sci. , vol.272 , pp. 2277-2282
    • Woolfit, M.1    Bromham, L.2
  • 32
    • 0030313331 scopus 로고    scopus 로고
    • Parallel evolution of nonfeeding larvae in echinoids
    • Wray G.A. Parallel evolution of nonfeeding larvae in echinoids. Syst. Biol. 45 (1996) 308-322
    • (1996) Syst. Biol. , vol.45 , pp. 308-322
    • Wray, G.A.1
  • 33
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24 (2007) 1586-1591
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 34
    • 0033921902 scopus 로고    scopus 로고
    • Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
    • Zhang J. Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. J. Mol. Evol. 50 (2000) 56-68
    • (2000) J. Mol. Evol. , vol.50 , pp. 56-68
    • Zhang, J.1
  • 35
    • 0031306932 scopus 로고    scopus 로고
    • Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes
    • Zhang J., Kumar S., and Nei M. Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Mol. Biol. Evol. 14 (1997) 1335-1338
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1335-1338
    • Zhang, J.1    Kumar, S.2    Nei, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.