Apparent selection intensity for the cytochrome oxidase subunit i gene varies with mode of reproduction in echinoderms

Genetica

Volumn 122, Issue 2, 2004, Pages 115-125

  Foltz, David W ^a   Hrincevich, Adam W ^a   Rocha Olivares, Axayácatl ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

brittle stars; cytochrome oxidase subunit I gene; echinoderms; mitochondrial DNA; sea stars; sea urchins; synonymous non synonymous substitution rate ratio

Indexed keywords

CYTOCHROME C OXIDASE;

ANIMAL; ARTICLE; ENZYMOLOGY; GENETIC SELECTION; GENETICS; LARVA; MOLECULAR EVOLUTION; PHYSIOLOGY; REPRODUCTION; STARFISH;

ANIMALS; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; LARVA; REPRODUCTION; SELECTION (GENETICS); STARFISH;

ASTERIAS; ASTEROIDEA; ECHINODERMATA; ECHINOIDEA; INVERTEBRATA; LEPTASTERIAS; OPHIUROIDEA;

EID: 4544357357     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:GENE.0000041002.97173.1e     Document Type: Article

References (64)

1. Biermann, C.H., B.D. Kessing & S.R. Palumbi, 2003. Phylogeny and development of marine model species: strongylocentrotid sea urchins. Evol. Dev. 5: 360-371.
2. Bohonak, A.J., 1999. Dispersal, gene flow, and population structure. Q. Rev. Biol. 74: 21-45.
3. Charlesworth, B., 1998. Measures of divergence between populations and the effect of forces that reduce variability. Mol. Biol. Evol. 15: 538-543.
4. Charlesworth, D. & S.I. Wright, 2001. Breeding systems and genome evolution. Curr. Opin. Genet. Dev. 11: 685-690.
5. Debenham, P., M. Brzezinski, K. Foltz & S. Gaines, 2000. Genetic structure of populations of the red sea urchin, Strongylocentrotus franciscanus. J. Exp. Mar. Biol. Ecol. 253: 49-62.
6. Eckert, G.L., 2003. Effects of the planktonic period on marine population fluctuations. Ecology 84: 372-383.
7. Edmands, S., P.E. Moberg & R.S. Burton, 1996. Allozyme and mitochondrial DNA evidence of population subdivision in the purple sea urchin Strongylocentrotus purpuratus. Mar. Biol. 126: 443-450.
8. Emlet, R.B., L.R. McEdward & R.R. Strathmann, 1987. Echinoderm larval ecology viewed from the egg, pp. 55-136 in Echinoderm Studies, Vol. 2, edited by M. Jangoux & J.M. Lawrence. A.A. Balkema, Rotterdam, The Netherlands.
9. Flowers, J.M., 1999. Discordant patterns of genetic and morphological variation and their implications for the taxonomy of Leptasterias subgenus Hexasterias of the North Pacific. MS Thesis, Louisiana State University, Baton Rouge.
10. Flowers, J.M. & D.W. Foltz, 2001. Reconciling molecular systematics and traditional taxonomy in a species-rich clade of sea stars (Leptasterias subgenus Hexasterias). Mar. Biol. 139: 475-483.
11. Flowers, J.M., S.C. Schroeter & R.S. Burton, 2002. The recruitment sweepstakes has many winners: genetic evidence from the sea urchin Strongylocentrotus purpuratus. Evolution 56: 1445-1453.
12. Foltz, D.W., 2003. Invertebrate species with non-pelagic larvae have elevated levels of non-synonymous substitutions and reduced nucleotide diversities. J. Mol. Evol. 57: 607-612.
13. Foltz, D.W., W.B. Stickle, E.L. Campagnaro & A.E. Himel, 1996. Mitochondrial DNA polymorphisms reveal additional genetic heterogeneity within the Leptasterias hexactis (Echinodermata: Asteroidea) species complex. Mar. Biol. 125: 569-578.
14. Geyer, L.B. & S.R. Palumbi, 2003. Reproductive character displacement and the genetics of gamete recognition in tropical sea urchins. Evolution 57: 1049-1060.
15. Graustein, A., J.M. Gaspar, J.R. Walters & M.F. Palopoli, 2002. Levels of DNA polymorphism vary with mating system in the Nematode genus Caenorhabditis. Genetics 161: 99-107.
16. Hamrick, J.L. & M.J.W. Godt, 1996. Effects of life history traits on genetic diversity in plant species. Phil. Trans. Roy. Soc. L. 351B: 1291-1298.
17. Hart, M.W., 2002. Life history evolution and comparative developmental biology of echinoderms. Evol. Dev. 4: 62-71.
18. Hasegawa, M., Y. Cao & Z. Yang, 1998. Preponderance of slightly deleterious polymorphism in mitochondrial DNA: non-synonymous/synonymous rate ratio is much higher within species than between species. Mol. Biol. Evol. 15: 1499-1505.
19. Hedrick, P.W., 1999. Highly variable loci and their interpretation in evolution and conservation. Evolution 53: 313-318.
20. Hrincevich, A.W., 2002. Patterns of nucleotide substitution within and among mitochondrial gene regions in sea stars (Leptasterias spp.). PhD dissertation, Louisiana State University, Baton Rouge (permanent URL: http://etd.lsu.edu:8085/docs/available/etd-0120102-223858/).
21. Hrincevich, A.W., A. Rocha-Olivares & D.W. Foltz, 2000. Phylogenetic analysis of molecular lineages in a species-rich subgenus of sea stars (Leptasterias subgenus Hexasterias). Am. Zool. 40: 365-374.
22. Hughes, A.L. & M. Nei, 1988. Pattern of nucleotide substitution at major histocompatibility complex class-I loci reveals overdominant selection. Nature 335: 167-170.
23. Jarne, P. & T. Städler, 1995. Population genetic structure and mating system evolution in freshwater pulmonates. Experientia 51: 482-497.
24. Kinlan, B.P. & S.D. Gaines, 2003. Propagule dispersal in marine and terrestrial environments: a community perspective. Ecology 84: 2007-2020.
25. Kumar, S., K. Tamura, I.B. Jakobsen & M. Nei, 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
26. Landry, C., L.B. Geyer, Y. Arakaki, T. Uehara & S.R. Palumbi, 2003. Recent speciation in the Indo-West Pacific: rapid evolution of gamete recognition and sperm morphology in cryptic species of sea urchin. Proc. R. Soc. L. 270B: 1839-1847.
27. Lessios, H.A., 1981. Divergence in allopatry: molecular and morphological differentiation between sea urchins separated by the Isthmus of Panama. Evolution 35: 618-634.
28. Lessios, H.A., 2001. Molecular phylogeny of Diadema: systematic implications, pp. 487-495 in Echinoderms 2000, edited by M. Barker. A.A. Balkema, Lisse, The Netherlands.
29. Lessios, H.A. & C.W. Cunningham, 1990. Gametic incompatibility between species of the sea urchin Echinometra on the two sides of the Isthmus of Panama. Evolution 44: 933-941.
30. Lessios, H.A. & J.S. Pearse, 1996. Hybridization and introgression between Indo-Pacific species of Diadema. Mar. Biol. 126: 715-723.
31. Lessios, H.A., B.D. Kessing & J.S. Pearse, 2001. Population structure and speciation in tropical seas: Global phylogeography of the sea urchin Diadema. Evolution 55: 955-975.
32. Lessios, H.A., B.D. Kessing, D.R. Robertson & G. Paulay, 1999. Phylogeography of the pantropical sea urchin Eucidaris in relation to land barriers and ocean currents. Evolution 53: 806-817.
33. McCartney, M.A., G. Keller & H.A. Lessios, 2000. Dispersal barriers in tropical oceans and speciation in Atlantic and eastern Pacific sea urchins of the genus Echinometra. Mol. Ecol. 9: 1391-1400.
34. McGovern, T.M., 2002. Patterns of sexual and asexual reproduction in the brittle star Ophiactis savignyi in the Florida Keys. Mar. Ecol. Prog. Ser. 230: 119-126.
35. McMillan, W.O., R.A. Raff & S.R. Palumbi, 1992. Population genetic consequences of developmental evolution in sea urchins (Genus Heliocidaris). Evolution 46: 1299-1312.
36. Moberg, P.E. & R.S. Burton, 2000. Genetic heterogeneity among adult and recruit red sea urchins, Strongylocentrotus franciscanus. Mar. Biol. 136: 773-784.
37. Nachman, M.W., 1998. Deleterious mutations in animal mitochondrial DNA. Genetica 102/103: 61-69.
38. Ohta, T., 1992. The nearly neutral theory of molecular evolution. Annu. Rev. Ecol. Syst. 23: 263-286.
39. Palumbi, S.R., 1996. What can molecular genetics contribute to marine biogeography? An urchin's tale. J. Exp. Mar. Biol. Ecol. 203: 75-92.
40. Palumbi, S.R. & E.C. Metz, 1991. Strong reproductive isolation between closely related tropical sea urchins (genus Echinometra). Mol. Biol. Evol. 8: 227-239.
41. Palumbi, S.R., G. Grabowsky, T. Duda, L. Geyer & N. Tachino, 1997. Speciation and population genetic structure in tropical Pacific sea urchins. Evolution 51: 1506-1517.
42. Pannell, J.R. & B. Charlesworth. 2000. Effects of metapopulation processes on measures of genetic diversity. Phil. Trans. Roy. Soc. L. 355B: 1851-1864.
43. Rand, D.M., 2001. The units of selection on mitochondrial DNA. Annu Rev. Ecol. Syst. 32: 415-448.
44. Rand, D.M. & L.M. Kann, 1998. Mutation and selection at silent and replacement sites in the evolution of animal mitochondrial DNA. Genetica 102/103: 393-407.
45. Roy, M.S. & R. Sponer, 2001. The recent evolutionary history of Ophiactis savignyi (Echinodermata; Ophiuroidea), pp. 307-311 in Echinoderms 2000, edited by M. Barker. A.A. Balkema, Lisse, The Netherlands.
46. Roy, M.S. & R. Sponer, 2002. Evidence of a human-mediated invasion of the tropical western Atlantic by the 'world's most common brittlestar.' Proc. R. Soc. L. 269B: 1017-1023.
47. Rozas, J. & R. Rozas, 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
48. Schoen, D.J. & A.H.D. Brown, 1991. Intraspecific variation in population gene diversity and effective population size correlates with the mating system in plants. Proc. Natl Acad. Sci. 88: 4494-4497.
49. Schopf, T.J. & L.S. Murphy, 1973. Protein polymorphism of the hybridizing seastars Asterias forbesi and Asterias vulgaris and implications for their evolution. Biol. Bull. 145: 589-597.
50. Skold, M., S.R. Wing & P.V. Mladenov, 2003. Genetic subdivision of a sea star with high dispersal capability in relation to physical barriers in a fjordic seascape. Mar. Ecol. Prog. Ser. 250: 163-174.
51. Tajima, F., 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
52. Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin & D.G. Higgins, 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25: 4876-4882.
53. Wang, J. & A. Caballero, 1999. Developments in predicting the effective size of subdivided populations. Heredity 82: 212-226.
54. Ward, R.D. & J. Andrew, 1995. Population genetics of the northern Pacific seastar Asterias amurensis (Echinodermata: Asteriidae): allozyme differentiation among Japanese, Russian, and recently introduced Tasmanian populations. Mar. Biol. 124: 99-109.
55. Wares, J.P., 2001. Biogeography of Asterias: North Atlantic climate change and speciation. Biol. Bull. 201: 95-103.
56. Waters, J.M. & M.S. Roy, 2003. Global phylogeography of the fissiparous sea-star genus Coscinasterias. Mar. Biol. 142: 185-191.
57. Watts, R.J., M.S. Johnson & R. Black, 1990. Effects of recruitment on genetic patchiness in the urchin Echinometra mathaei in western Australia. Mar. Biol. 105: 145-151.
58. Whitlock, M.C., 2003. Fixation probability and time in subdivided populations. Genetics 164: 767-779.
59. Williams, S.T., 2000. Species boundaries in the starfish genus Linckia. Mar. Biol. 136: 137-148.
60. Williams, S.T. & J.A.H. Benzie, 1996. Genetic uniformity of widely separated populations of the coral reef starfish Linckia laevigata from the East Indian and West Pacific Oceans, revealed by allozyme electrophoresis. Mar. Biol. 126: 99-107.
61. Williams, S.T. & J.A.H. Benzie, 1997. Indo-West Pacific patterns of genetic differentiation in the high-dispersal starfish Linckia laevigata. Mol. Ecol. 6: 559-573.
62. Yang, Z., 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
63. Yang, Z. & A.D. Yoder, 1999. Estimation of the transition/ transversion rate bias and species sampling. J. Mol. Evol. 48: 274-283.
64. Zigler, K.S., E.C. Raff, E. Popodi, R.A. Raff & H.A. Lessios, 2003. Adaptive evolution of Bindin in the genus Heliocidaris is correlated with the shift to direct development. Evolution 57: 2293-2302.