Mechanistic aspects of horseradish peroxidase elucidated through single-molecule studies

Journal of the American Chemical Society

Volumn 131, Issue 17, 2009, Pages 6277-6282

  Gorris, Hans H ^a,b   Walt, David R ^a  

^a TUFTS UNIVERSITY   (United States)

^b UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLEX RED; BULK SOLUTIONS; DISMUTATION; FEMTOLITER CHAMBERS; FLUOROGENIC SUBSTRATE; GLASS OPTICAL FIBERS; HORSERADISH PEROXIDASE; MECHANISTIC ASPECTS; PRODUCT FORMATION; REACTION MECHANISM; SINGLE-MOLECULE STUDIES; TURNOVER RATE; TWO-STEP REACTION MECHANISMS;

ENZYMES; FLUORESCENCE MICROSCOPY; MOLECULES; OPTICAL COMMUNICATION; OPTICAL FIBERS; OPTICAL MICROSCOPY;

SUBSTRATES;

AMPLEX RED; FLUORESCEIN; FLUORESCENT DYE; HORSERADISH PEROXIDASE; RADICAL; UNCLASSIFIED DRUG; FREE RADICAL;

ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; ENZYME ANALYSIS; ENZYME KINETICS; ENZYME MECHANISM; ENZYME METABOLISM; ENZYME SUBSTRATE; FLUORESCENCE MICROSCOPY; MOLECULE; OXIDATION; OXIDATION REDUCTION REACTION; CHEMISTRY; METABOLISM; PROTEIN MICROARRAY; SOLUTION AND SOLUBILITY; SURFACE PROPERTY; TIME;

FREE RADICALS; HORSERADISH PEROXIDASE; MICROSCOPY, FLUORESCENCE; PROTEIN ARRAY ANALYSIS; SOLUTIONS; SURFACE PROPERTIES; TIME FACTORS;

EID: 69949143453     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja9008858     Document Type: Article

References (41)

1. Rondelez, Y.; Tresset, G.; Tabata, K. V.; Arata, H.; Fujita, H.; Takeuchi, S.; Noji, H. Nat. Biotechnol. 2005, 23, 361-365.
2. Rissin, D. M.; Walt, D. R. Nano Lett. 2006, 6, 520-523.
3. Gorris, H. H.; Rissin, D. M.; Walt, D. R. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 17680-17685.
4. Rissin, D. M.; Gorris, H. H.; Walt, D. R. J. Am. Chem. Soc. 2008, 130, 5349-5353.
5. Craig, D. B.; Nachtigall, J. T.; Ash, H. L.; Shoemaker, G. K.; Dyck, A. C.; Wawrykow, T. M.; Gudbjartson, H. L. J. Prot. Chem. 2003, 22, 555-561.
6. Xue, Q.; Yeung, E. S. Nature (London) 1995, 373, 681-683.
7. Lee, A. I.; Brody, J. P. Biophys. J. 2005, 88, 4303-4311.
8. Craig, D. B.; Arriaga, E. A.; Wong, J. C. Y.; Lu, H.; Dovichi, N. J. J. Am. Chem. Soc. 1996, 118, 5245-5253.
9. Polakowski, R.; Craig, D. B.; Skelley, A.; Dovichi, N. J. J. Am. Chem. Soc. 2000, 122, 4853-4855.
10. English, B. P.; Min, W.; van Oijen, A. M.; Lee, K. T.; Luo, G.; Sun, H.; Cherayil, B. J.; Kou, S. C.; Xie, X. S. Nat. Chem. Biol. 2006, 2, 87-94.
11. Lu, H. P.; Xun, L.; Xie, X. S. Science 1998, 282, 1877-1882.
12. Velonia, K.; Flomenbom, O.; Loos, D.; Masuo, S.; Cotlet, M.; Engelborghs, Y.; Hofkens, J.; Rowan, A. E.; Klafter, J.; Nolte, R. J. M.; de Schryver, F. C. Angew. Chem., Int. Ed. 2005, 44, 560-564.
13. van Oijen, A. M.; Blainey, P. C.; Crampton, D. J.; Richardson, C. C.; Ellenberger, T.; Xie, X. S. Science 2003, 301, 1235-1238.
14. Shannon, L. M.; Kay, E.; Lew, J. Y. J. Biol. Chem. 1966, 241, 2166-2172.
15. Veitch, N. C. Phytochemistry 2004, 65, 249-259.
16. Gajhede, M.; Schuller, D. J.; Henriksen, A.; Smith, A. T.; Poulos, T. L. Nat. Struct. Biol. 1997, 4, 1032-1038.
17. Berglund, G. I.; Carlsson, G. H.; Smith, A. T.; Szoke, H.; Henriksen, A.; Hajdu, J. Nature (London) 2002, 417, 463-468.
18. Chance, B. Arch. Biochem. Biophys. 1952, 41, 416-424.
19. Rodriguez-Lopez, J. N.; Gilabert, M. A.; Tudela, J.; Thorneley, R. N. F.; Garcia-Canovas, F. Biochemistry 2000, 39, 13201-13209.
20. Keilin, D.; Mann, T. Proc. R. Soc. London B: Biol. Sci. 1937, 122, 119-133.
21. Wittenberg, J. B.; Noble, R. W.; Wittenberg, B. A.; Antonini, E.; Brunori, M.; Wyman, J. J. Biol. Chem. 1967, 242, 626-634.
22. Chen, S. X.; Schopfer, P. Eur. J. Biochem. 1999, 260, 726-735.
23. Dunford, H. B.; Wiley: New York, 1999.
24. Towne, V.; Will, M.; Oswald, B.; Zhao, Q. J. Anal. Biochem. 2004, 334, 290-296.
25. Zhou, M. J.; Diwu, Z. J.; Panchuk-Voloshina, N.; Haugland, R. P. Anal. Biochem. 1997, 253, 162-168.
26. Harris, R. Z.; Newmyer, S. L.; Ortiz de Montellano, P. R. J. Biol. Chem. 1993, 268, 1637-1645.
27. George, P. Nature (London) 1952, 169, 612-613.
28. George, P. Biochem. J. 1953, 54, 267-276.
29. Hewson, W. D.; Dunford, H. B. J. Biol. Chem. 1976, 251, 6036-6042.
30. Hewson, W. D.; Dunford, H. B. J. Biol. Chem. 1976, 251, 6043-6052.
31. Danner, D. J.; Brignac, P. J., Jr.; Arceneaux, D.; Patel, V. Arch. Biochem. Biophys. 1973, 156, 759-763.
32. Zou, H. X.; Taylor, K. E. Chemosphere 1994, 28, 1807-1817.
33. Edman, L.; Földes-Papp, Z.; Wennmalm, S.; Rigler, R. Chem. Phys. 1999, 247, 11-22.
34. Hassler, K.; Rigler, P.; Blom, H.; Rigler, R.; Widengren, J.; Lasser, T. Opt. Express 2007, 15, 5366-5375.
35. Comellas-Aragones, M.; Engelkamp, H.; Claessen, V. I.; Sommerdijk, N. A. J. M.; Rowan, A. E.; Christianen, P. C. M.; Maan, J. C.; Verduin, B. J. M.; Cornelissen, J. J. L. M.; Nolte, R. J. M. Nat. Nanotechnol. 2007, 2, 635-639.
36. Noble, R. W.; Gibson, Q. H. J. Biol. Chem. 1970, 245, 2409-2413.
37. Pantano, P.; Walt, D. R. Chem. Mater. 1996, 8, 2832-2835.
38. Gorris, H. H.; Blicharz, T. M.; Walt, D. R. FEBS J 2007, 274, 5462-5470.
39. Rissin, D. M.; Walt, D. R. J. Am. Chem. Soc. 2006, 128, 6286-6287.
40. Li, Z.; Hayman, R. B.; Walt, D. R. J. Am. Chem. Soc. 2008, 130, 12622-12623.
41. Leon, D.; Marin-Garcia, P.; Sanchez-Nogueiro, J.; de la O, F. O.; Garcia-Carmona, F.; Miras-Portugal, M. T Anal. Biochem. 2007, 367, 140-142.