메뉴 건너뛰기




Volumn 61, Issue 9, 2009, Pages 635-648

MHC class i A loci polymorphism and diversity in three Southeast Asian populations of cynomolgus macaque

Author keywords

Allele; Cynomolgus macaque; Diversity; MHC; Population genetics

Indexed keywords

ANTIGEN MAFA CLASS 1A; HISTOCOMPATIBILITY ANTIGEN; HLA A ANTIGEN; UNCLASSIFIED DRUG;

EID: 69949134918     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-009-0390-y     Document Type: Article
Times cited : (36)

References (53)
  • 1
    • 0036551777 scopus 로고    scopus 로고
    • Macaque evolution and dispersal in insular south-east Asia
    • C Abegg B Thierry 2002 Macaque evolution and dispersal in insular south-east Asia Biol J Linn Soc Lond 75 555 576
    • (2002) Biol J Linn Soc Lond , vol.75 , pp. 555-576
    • Abegg, C.1    Thierry, B.2
  • 3
    • 43549114766 scopus 로고    scopus 로고
    • Mitochondrial DNA sequence phylogeny of 4 populations of the widely distributed cynomolgus macaque (Macaca fascicularis fascicularis)
    • A Blancher M Bonhomme B Crouau-Roy K Terao T Kitano N Saitou 2008 Mitochondrial DNA sequence phylogeny of 4 populations of the widely distributed cynomolgus macaque (Macaca fascicularis fascicularis) J Heredity 99 254 264
    • (2008) J Heredity , vol.99 , pp. 254-264
    • Blancher, A.1    Bonhomme, M.2    Crouau-Roy, B.3    Terao, K.4    Kitano, T.5    Saitou, N.6
  • 4
    • 35148848701 scopus 로고    scopus 로고
    • Factors shaping genetic variation in the MHC of natural non-human primate populations
    • M Bonhomme A Blancher MF Jalil B Crouau-Roy 2007 Factors shaping genetic variation in the MHC of natural non-human primate populations Tissue Antigens 70 398 411
    • (2007) Tissue Antigens , vol.70 , pp. 398-411
    • Bonhomme, M.1    Blancher, A.2    Jalil, M.F.3    Crouau-Roy, B.4
  • 5
    • 38849101650 scopus 로고    scopus 로고
    • Origin and number of founders in an introduced insular primate: Estimation from nuclear genetic data
    • M Bonhomme A Blancher S Cuartero L Chikhi B Crouau-Roy 2008 Origin and number of founders in an introduced insular primate: estimation from nuclear genetic data Mol Ecol 17 1009 1019
    • (2008) Mol Ecol , vol.17 , pp. 1009-1019
    • Bonhomme, M.1    Blancher, A.2    Cuartero, S.3    Chikhi, L.4    Crouau-Roy, B.5
  • 6
    • 60249086593 scopus 로고    scopus 로고
    • Assessing natural introgression in 2 biomedical model species, the rhesus macaque (Macaca mulatta) and the long-tailed macaque (Macaca fascicularis)
    • M Bonhomme S Cuartero A Blancher B Crouau-Roy 2009 Assessing natural introgression in 2 biomedical model species, the rhesus macaque (Macaca mulatta) and the long-tailed macaque (Macaca fascicularis) J Hered 100 158 169
    • (2009) J Hered , vol.100 , pp. 158-169
    • Bonhomme, M.1    Cuartero, S.2    Blancher, A.3    Crouau-Roy, B.4
  • 7
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-Net: An agglomerative method for the construction of phylogenetic networks
    • D Bryant V Moulton 2004 Neighbor-Net: an agglomerative method for the construction of phylogenetic networks Mol Biol Evol 21 255 265
    • (2004) Mol Biol Evol , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 9
    • 0141669013 scopus 로고    scopus 로고
    • Experimental Mycobacterium tuberculosis infection of cynomolgus macaques closely resembles the various manifestations of human M. tuberculosis infection
    • SVr Capuano DA Croix S Pawar A Zinovik A Myers PL Lin S Bissel C Fuhrman E Klein JL Flynn 2003 Experimental Mycobacterium tuberculosis infection of cynomolgus macaques closely resembles the various manifestations of human M. tuberculosis infection Infect Immun 71 5831 5844
    • (2003) Infect Immun , vol.71 , pp. 5831-5844
    • Svr, C.1    Croix, D.A.2    Pawar, S.3    Zinovik, A.4    Myers, A.5    Lin, P.L.6    Bissel, S.7    Fuhrman, C.8    Klein, E.9    Flynn, J.L.10
  • 10
    • 3042514127 scopus 로고    scopus 로고
    • A demographic analysis of primate research in the United States
    • KM Conlee EH Hoffeld ML Stephens 2004 A demographic analysis of primate research in the United States ATLA Supplement 1 315 322
    • (2004) ATLA Supplement , vol.1 , pp. 315-322
    • Conlee, K.M.1    Hoffeld, E.H.2    Stephens, M.L.3
  • 11
    • 36048948687 scopus 로고    scopus 로고
    • Nonhuman primate models of Parkinson's disease
    • ME Emborg 2007 Nonhuman primate models of Parkinson's disease ILAR J 48 339 355
    • (2007) ILAR J , vol.48 , pp. 339-355
    • Emborg, M.E.1
  • 12
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: An integrated software package for population genetics data analysis
    • L Excoffier G Laval S Schneider 2005 Arlequin ver. 3.0: an integrated software package for population genetics data analysis Evolutionary Bioinformatics Online 1 47 50
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 13
    • 0029816997 scopus 로고    scopus 로고
    • Molecular phylogeny of macaques: Implications of nucleotide sequences from an 896 base pair region of mitochondrial DNA
    • K Hayasaka K Fujii S Horai 1996 Molecular phylogeny of macaques: implications of nucleotide sequences from an 896 base pair region of mitochondrial DNA Mol Biol Evol 13 1044 1053
    • (1996) Mol Biol Evol , vol.13 , pp. 1044-1053
    • Hayasaka, K.1    Fujii, K.2    Horai, S.3
  • 14
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • DH Huson D Bryant 2006 Application of phylogenetic networks in evolutionary studies Mol Biol Evol 23 254 267
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 16
    • 38149022676 scopus 로고    scopus 로고
    • Genetic diversity of longtail macaques (Macaca fascicularis) on the island of Mauritius: An assessment of nuclear and mitochondrial DNA polymorphisms
    • Y Kawamoto S Kawamoto K Matsubayashi K Nozawa T Watanabe MA Stanley D Perwitasari-Farajallah 2008 Genetic diversity of longtail macaques (Macaca fascicularis) on the island of Mauritius: an assessment of nuclear and mitochondrial DNA polymorphisms J Med Primatol 37 45 54
    • (2008) J Med Primatol , vol.37 , pp. 45-54
    • Kawamoto, Y.1    Kawamoto, S.2    Matsubayashi, K.3    Nozawa, K.4    Watanabe, T.5    Stanley, M.A.6    Perwitasari-Farajallah, D.7
  • 17
    • 33748580104 scopus 로고    scopus 로고
    • Human embryonic stem cell lines derived from single blastomeres
    • I Klimanskaya Y Chung S Becker J Lu R Lanza 2006 Human embryonic stem cell lines derived from single blastomeres Nature 444 481 485
    • (2006) Nature , vol.444 , pp. 481-485
    • Klimanskaya, I.1    Chung, Y.2    Becker, S.3    Lu, J.4    Lanza, R.5
  • 19
    • 26844432278 scopus 로고    scopus 로고
    • Unusually high frequency MHC class i alleles in Mauritian origin cynomolgus macaques
    • KC Krebs Z Jin R Rudersdorf AL Hughes DH O'Connor 2005 Unusually high frequency MHC class I alleles in Mauritian origin cynomolgus macaques J Immunol 175 5230 5239
    • (2005) J Immunol , vol.175 , pp. 5230-5239
    • Krebs, K.C.1    Jin, Z.2    Rudersdorf, R.3    Hughes, A.L.4    O'Connor, D.H.5
  • 20
    • 56049126654 scopus 로고    scopus 로고
    • Human endogenous retrovirus (HERVK9) structural polymorphism with haplotypic HLA-A allelic associations
    • JK Kulski A Shigenari T Shiina M Ota K Hosomichi I James H Inoko 2008 Human endogenous retrovirus (HERVK9) structural polymorphism with haplotypic HLA-A allelic associations Genetics 180 445 457
    • (2008) Genetics , vol.180 , pp. 445-457
    • Kulski, J.K.1    Shigenari, A.2    Shiina, T.3    Ota, M.4    Hosomichi, K.5    James, I.6    Inoko, H.7
  • 24
    • 69949135446 scopus 로고    scopus 로고
    • Analysis of HLA gene frequencies and HLA haplotype frequencies for bone marrow donors in Japan
    • (in Japanese)
    • Y Moriyama K Kato T Mura T Juji 2006 Analysis of HLA gene frequencies and HLA haplotype frequencies for bone marrow donors in Japan MHC 12 183 201 (in Japanese)
    • (2006) MHC , vol.12 , pp. 183-201
    • Moriyama, Y.1    Kato, K.2    Mura, T.3    Juji, T.4
  • 25
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • M Nei T Gojobori 1986 Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions Mol Biol Evol 3 418 426
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 30
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • J Rozas R Rozas 1999 DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis Bioinformatics 15 174 175
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 32
    • 0017622897 scopus 로고
    • Differences in the virulence of Plasmodium knowlesi for Macaca irus (fascicularis) of Philippine and Malayan origins
    • LH Schmidt R Fradkin J Harrison RN Rossan 1977 Differences in the virulence of Plasmodium knowlesi for Macaca irus (fascicularis) of Philippine and Malayan origins Am J Trop Med Hyg 26 612 622
    • (1977) Am J Trop Med Hyg , vol.26 , pp. 612-622
    • Schmidt, L.H.1    Fradkin, R.2    Harrison, J.3    Rossan, R.N.4
  • 33
    • 10344227722 scopus 로고    scopus 로고
    • An update of the HLA genomic region, locus information and disease associations: 2004
    • T Shiina H Inoko JK Kulski 2004 An update of the HLA genomic region, locus information and disease associations: 2004 Tissue Antigens 64 631 649
    • (2004) Tissue Antigens , vol.64 , pp. 631-649
    • Shiina, T.1    Inoko, H.2    Kulski, J.K.3
  • 34
    • 58849104457 scopus 로고    scopus 로고
    • The HLA genomic loci map: Expression, interaction, diversity and disease
    • T Shiina K Hosomichi H Inoko JK Kulski 2009 The HLA genomic loci map: expression, interaction, diversity and disease J Hum Genet 54 15 39
    • (2009) J Hum Genet , vol.54 , pp. 15-39
    • Shiina, T.1    Hosomichi, K.2    Inoko, H.3    Kulski, J.K.4
  • 36
    • 33846912027 scopus 로고    scopus 로고
    • Mitochondrial DNA variation within and among regional populations of longtail macaques (Macaca fascicularis) in relation to other species of the fascicularis group of macaques
    • DG Smith JW McDonough DA George 2007 Mitochondrial DNA variation within and among regional populations of longtail macaques (Macaca fascicularis) in relation to other species of the fascicularis group of macaques Am J Primatol 69 182 198
    • (2007) Am J Primatol , vol.69 , pp. 182-198
    • Smith, D.G.1    McDonough, J.W.2    George, D.A.3
  • 37
    • 84996051626 scopus 로고
    • Population status of nonhuman primates in Asia, with emphasis on rhesus macaques in India
    • CH Southwick MF Siddiqi 1994 Population status of nonhuman primates in Asia, with emphasis on rhesus macaques in India Am J Primatol 34 51 59
    • (1994) Am J Primatol , vol.34 , pp. 51-59
    • Southwick, C.H.1    Siddiqi, M.F.2
  • 38
    • 0008778732 scopus 로고
    • Behavior and ecology of Macaca fascicularis in Mauritius: A preliminary study
    • RW Sussman I Tattersall 1981 Behavior and ecology of Macaca fascicularis in Mauritius: a preliminary study Primates 22 192 205
    • (1981) Primates , vol.22 , pp. 192-205
    • Sussman, R.W.1    Tattersall, I.2
  • 39
    • 0342278895 scopus 로고
    • Distribution, abundance, and putative ecological strategy of Macaca fascicularis on the island of Mauritius, Southwestern Indian Ocean
    • RW Sussman I Tattersall 1986 Distribution, abundance, and putative ecological strategy of Macaca fascicularis on the island of Mauritius, Southwestern Indian Ocean Folia Primatology 46 28 43
    • (1986) Folia Primatology , vol.46 , pp. 28-43
    • Sussman, R.W.1    Tattersall, I.2
  • 40
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • F Tajima 1989 The effect of change in population size on DNA polymorphism Genetics 123 597 601
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 42
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 43
    • 33751014882 scopus 로고    scopus 로고
    • Comparative phylogenetics offer new insights into the biogeographic history of Macaca fascicularis and the origin of the Mauritian macaques
    • AJ Tosi CS Coke 2007 Comparative phylogenetics offer new insights into the biogeographic history of Macaca fascicularis and the origin of the Mauritian macaques Mol Phylogenet Evol 42 498 504
    • (2007) Mol Phylogenet Evol , vol.42 , pp. 498-504
    • Tosi, A.J.1    Coke, C.S.2
  • 44
    • 0036145725 scopus 로고    scopus 로고
    • Y-chromosome and mitochondrial markers in Macaca fascicularis indicate introgression with Indochinese M. mulatta and a biogeographic barrier in the isthmus of Kra
    • AJ Tosi JC Morales DJ Melnick 2002 Y-chromosome and mitochondrial markers in Macaca fascicularis indicate introgression with Indochinese M. mulatta and a biogeographic barrier in the isthmus of Kra Int J Primatol 23 161 178
    • (2002) Int J Primatol , vol.23 , pp. 161-178
    • Tosi, A.J.1    Morales, J.C.2    Melnick, D.J.3
  • 47
    • 33847081148 scopus 로고    scopus 로고
    • Idiosyncratic drug reactions: Current understanding
    • J Uetrecht 2007 Idiosyncratic drug reactions: current understanding Annu Rev Pharmacol Toxico 47 513 539
    • (2007) Annu Rev Pharmacol Toxico , vol.47 , pp. 513-539
    • Uetrecht, J.1
  • 48
    • 58249101033 scopus 로고    scopus 로고
    • A new theory of MHC evolution: Beyond selection on the immune genes
    • C van Oosterhout 2009 A new theory of MHC evolution: beyond selection on the immune genes Proc Biol Sci 276 657 665
    • (2009) Proc Biol Sci , vol.276 , pp. 657-665
    • Van Oosterhout, C.1
  • 49
    • 0034492377 scopus 로고    scopus 로고
    • Maps of Pleistocene sea levels in Southeast Asia: Shorelines, river systems and time durations
    • H Voris 2000 Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations J Biogeogr 27 1153 1167
    • (2000) J Biogeogr , vol.27 , pp. 1153-1167
    • Voris, H.1
  • 51
    • 34147128102 scopus 로고    scopus 로고
    • Major histocompatibility complex-defined macaques in transplantation research
    • RW Wiseman DH O'Connor 2007 Major histocompatibility complex-defined macaques in transplantation research Transplant Rev 21 17 25
    • (2007) Transplant Rev , vol.21 , pp. 17-25
    • Wiseman, R.W.1    O'Connor, D.H.2
  • 53
    • 0000862605 scopus 로고
    • The interpretation of population structure by F-statistics with special regard to systems of mating
    • S Wright 1965 The interpretation of population structure by F-statistics with special regard to systems of mating Evolution 19 395 420
    • (1965) Evolution , vol.19 , pp. 395-420
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.