Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans

Journal of Bacteriology

Volumn 191, Issue 18, 2009, Pages 5697-5705

  Watson, Brian J ^a,b   Zhang, Haitao ^b   Longmire, Atkinson G ^b   Young, Hwan Moon ^b   Hutcheson, Steven W ^b  

^a UNIVERSITY OF MARYLAND   (United States)

^b University of Maryland   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLOBIOSE; CELLULOSE; CELLULOSE 1,4 BETA CELLOBIOSIDASE; GLUCAN SYNTHASE; GLUCOSE;

ARTICLE; BIOCHEMISTRY; CONTROLLED STUDY; ENZYME PURIFICATION; ENZYME RELEASE; GENE EXPRESSION; MARINE BACTERIUM; MICROBIAL DEGRADATION; MOLECULAR CLONING; NONHUMAN; PHYLOGENY; PREDICTION; PRIORITY JOURNAL; SACCHAROPHAGUS DEGRADANS;

ALTEROMONADACEAE; BACTERIAL PROTEINS; CELLOBIOSE; CELLULASE; CELLULOSE; CELLULOSE 1,4-BETA-CELLOBIOSIDASE; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; CULTURE MEDIA; PHYLOGENY;

BACTERIA (MICROORGANISMS); FUNGI; SACCHAROPHAGUS DEGRADANS; SACCHAROPHAGUS DEGRADANS 2-40;

EID: 69949099255     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00481-09     Document Type: Article

References (38)

1. Altschul, S. F., T. L. Madden, A. A. Schaffer, J. H. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Bayer, E. A., H. Chanzy, R. Lamed, and Y. Shoham. 1998. Cellulose, cellulases and cellulosomes. Curr. Opin. Struct. Biol. 8:548-557.
3. Boraston, A. B., D. N. Bolam, H. J. Gilbert, and G. J. Davies. 2004. Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem. J. 382:769-781.
4. Breyer, W. A., and B. W. Matthews. 2001. A structural basis for processivity. Protein Sci. 10:1699-1711.
5. Cohen, R., M. R. Suzuki, and K. E. Hammel. 2005. Processive endoglucanase active in crystalline cellulose hydrolysis by the brown rot basidiomycete Gloeophyllum trabeum. Appl. Environ. Microbiol. 71:2412-2417. (Pubitemid 40646983)
6. Doi, R. H., and A. Kosugi. 2004. Cellulosomes: Plant-cell-wall-degrading enzyme complexes. Nat. Rev. Microbiol. 2:541-551.
7. Doner, L. W., and P. L. Irwin. 1992. Assay of reducing end-groups in oligosaccharide homologs with 2,2′-bicinchoninate. Anal. Biochem. 202:50-53.
8. Ducros, V., M. Czjzek, A. Belaich, C. Gaudin, H. P. Fierobe, L. P. Belaich, G. J. Davies, and R. Haser. 1995. Crystal-structure of the catalytic domain of a bacterial cellulase belonging to family-5. Structure 3:939-949.
9. Ghose, T. K. 1987. Measurement of cellulase activities. Pure Appl. Chem. 59:257-268.
10. Gilad, R., L. Rabinovich, S. Yaron, E. A. Bayer, R. Lamed, H. J. Gilbert, and Y. Shoham. 2003. Ce1I, a noncellulosomal family 9 enzyme from Clostridium thermocellum, is a processive endoglucanase that degrades crystalline cellulose. J. Bacteriol. 185:391-398.
11. Gusakov, A. V., A. P. Sinitsyn, T. N. Salanovich, F. E. Bukhtojarov, A. V. Markov, B. B. Ustinov, C. van Zeijl, P. Punt, and R. Burlingame. 2005. Purification, cloning and characterisation of two forms of thermostable and highly active cellobiohydrolase I (Cel7A) produced by the industrial strain of Chrysosporium lucknowense. Enzyme Micob. Technol. 36:57-69.
12. Himmel, M. E., S. Y. Ding, D. R. Johnson, W. S. Adney, M. R. Nimlos, J. W. Brady, and T. D. Foust. 2007. Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science 315:804-807.
13. Horn, S. J., P. Sikorski, J. B. Cederkvist, G. Vaaje-Kolstad, M. Sorlie, B. Synstad, G. Vriend, K. M. Varum, and V. G. H. Eijsink. 2006. Costs and benefits of processivity in enzymatic degradation of recalcitrant polysaccharides. Proc. Natl. Acad. Sci. USA 103:18089-18094.
14. Howard, M. B., N. A. Ekborg, L. E. Taylor, S. W. Hutcheson, and R. M. Weiner. 2004. Identification and analysis of polyserine linker domains in prokaryotic proteins with emphasis on the marine bacterium Microbulbifer degradans. Protein Sci. 13:1422-1425.
15. Irwin, D. C., M. Spezio, L. P. Walker, and D. B. Wilson. 1993. Activity studies of 8 purified cellulases - specificity, synergism, and binding domain effects. Biotechnol. Bioeng. 42:1002-1013.
16. Jeoh, T., D. B. Wilson, and L. P. Walker. 2006. Effect of cellulase mole fraction and cellulose recalcitrance on synergism in cellulose hydrolysis and binding. Biotechnol. Prog. 22:270-277.
17. Kang, M. S., I. C. Kang, S. M. Kim, H. C. Lee, and J. S. Oh. 2007. Effect of Leuconastoc spp. on the formation of Streptococcus mutans biorilm. J. Microbiol. 45:291-296.
18. Kumar, R., S. Singh, and O. V. Singh. 2008. Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives. J. Ind. Microbiol. Biotechnol. 35:377-391.
19. Li, Y. C., D. C. Irwin, and D. B. Wilson. 2007. Processivity, substrate binding, and mechanism of cellulose hydrolysis by Thermobifida fusca Ce19A. Appl. Environ. Microbiol. 73:3165-3172.
20. Lo Leggio, L., and S. Larsen. 2002. The 1.62 angstrom structure of Thermoascus aurantiacus endoglucanase: completing the structural picture of subfamilies in glycoside hydrolase family 5. FEBS Lett. 523:103-108.
21. Martinez, D., R. M. Berka, B. Henrissat, M. Saloheimo, M. Arvas, S. E. Baker, J. Chapman, O. Chertkov, P. M. Coutinho, D. Cullen, E. G. J. Danchin, I. V. Grigoriev, P. Harris, M. Jackson, C. P. Kubicek, C. S. Han, I. Ho, L. F. Larrondo, A. L. de Leon, J. K. Magnuson, S. Merino, M. Misra, B. Nelson, N. Putnam, B. Robbertse, A. A. Salamov, M. Schmoll, A. Terry, N. Thayer, A. Westerholm-Parvinen, C. L. Schoch, J. Yao, R. Barabote, M. A. Nelson, C. Detter, D. Bruce, C. R. Kuske, G. Xie, P. Richardson, D. S. Rokhsar, S. M. Lucas, E. M. Rubin, N. Dunn-Coleman, M. Ward, and T. S. Brettin. 2008. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat. Biotechnol. 26:553-560.
22. Park, J. K., L. X. Wang, H. V. Patel, and S. Roseman. 2002. Molecular cloning and characterization of a unique beta-glucosidase from Vibrio cholerae. J. Biol. Chem. 277:29555-29560.
23. Qi, M., H. S. Jun, and C. W. Forsberg. 2007. Characterization and synergistic interactions of Fibrobacter succinogenes glycoside hydrolases. Appl. Environ. Microbiol. 73:6098-6105.
24. Qi, M., H. S. Jun, and C. W. Forsberg. 2008. Cel9D, an atypical 1,4-β-D-glucan glucohydrolase from Fibrobacter succinogenes: characteristics, catalytic residues, and synergistic interactions with other cellulases. J. Bacteriol. 190:1976-1984.
25. Rubin, E. M. 2008. Genomics of cellulosic biofuels. Nature 454:841-845.
26. Sakon, J., D. Irwin, D. B. Wilson, and P. A. Karplus. 1997. Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca. Nat. Struct. Biol. 4:810-818.
27. Schultz, J., F. Milpetz, P. Bork, and C. P. Ponting. 1998. SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl. Acad. Sci. USA 95:5857-5864.
28. T. J. Bacteriol. 188:3849-3861.
29. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
30. Violot, S., N. Aghajari, M. Czjzek, G. Feller, G. K. Sonan, P. Gouet, C. Gerday, R. Haser, and V. Receveur-Brechot. 2005. Structure of a full length psychrophilic cellulase from Pseudoalteromonas haloplanktis revealed by x-ray diffraction and small angle x-ray scattering. J. Mol. Biol. 348:1211-1224.
31. Weiner, R. M., L. E. Taylor, B. Henrissat, L. Hauser, M. Land, P. M. Coutinho, C. Rancurel, E. H. Saunders, A. G. Longmire, H. T. Zhang, E. A. Bayer, H. J. Gilbert, F. Larimer, I. B. Zhulin, N. A. Ekborg, R. Lamed, P. M. Richardson, I. Borovok, and S. Hutcheson. 2008. Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40(T). PLOS Genet. 4:e100087.
32. Wilson, D. B. 2004. Studies of Thermobifida fusca plant cell wall degrading enzymes. Chem. Rec. 4:72-82.
33. Wilson, D. B. 2008. Three microbial strategies for plant cell wall degradation. Ann. N. Y. Acad. Sci. 1125:289-297.
34. Xie, G., D. C. Bruce, J. F. Challacombe, O. Chertkov, J. C. Detter, P. Gilna, C. S. Han, S. Lucas, M. Misra, G. L. Myers, P. Richardson, R. Tapia, N. Thayer, L. S. Thompson, T. S. Brettin, B. Henrissat, D. B. Wilson, and M. J. McBride. 2007. Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl. Environ. Microbiol. 73:3536-3546.
35. Zhang, S., B. K. Barr, and D. B. Wilson. 2000. Effects of noncatalytic residue mutations on substrate specificity and ligand binding of Thermobifida fusca endocellulase Cel6A. Eur. J. Biochem. 267:244-252.
36. Zhang, S., D. C. Irwin, and D. B. Wilson. 2000. Site-directed mutation of noncatalytic residues of Thermobifida fusca exocellulase Cel6B. Eur. J. Biochem. 267:3101-3115.
37. Zhang, Y. H. P., J. B. Cui, L. R. Lynd, and L. R. Kuang. 2006. A transition from cellulose swelling to cellulose dissolution by o-phosphoric acid: Evidence from enzymatic hydrolysis and supramolecular structure. Biomacromolecules 7:644-648.
38. Zhang, Y. H. P., M. E. Himmel, and J. R. Mielenz. 2006. Outlook for cellulase improvement: screening and selection strategies. Biotechnol. Adv. 24:452-481.