메뉴 건너뛰기




Volumn 183, Issue 2, 2009, Pages 255-266

Accurate and robust extraction of brain regions using a deformable model based on radial basis functions

Author keywords

Brain extraction; Deformable model; Radial basis function; Skull stripping

Indexed keywords

ACCURACY; ANALYTIC METHOD; ARTICLE; BRAIN REGION; BRAIN SIZE; CONTROLLED STUDY; IMAGE ANALYSIS; IMAGE DISPLAY; IMAGE PROCESSING; IMAGE RECONSTRUCTION; INTERMETHOD COMPARISON; MATHEMATICAL ANALYSIS; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL;

EID: 69949098104     PISSN: 01650270     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2009.05.011     Document Type: Article
Times cited : (30)

References (53)
  • 1
    • 0032709896 scopus 로고    scopus 로고
    • Model creation and deformation for the automatic segmentation of the brain in MR images
    • Aboutanos G.B., Nikanne J., Watkins N., and Dawant B.M. Model creation and deformation for the automatic segmentation of the brain in MR images. IEEE Trans Biomed Eng 46 (1999) 1346-1356
    • (1999) IEEE Trans Biomed Eng , vol.46 , pp. 1346-1356
    • Aboutanos, G.B.1    Nikanne, J.2    Watkins, N.3    Dawant, B.M.4
  • 2
    • 38749117914 scopus 로고    scopus 로고
    • The impact of skull-stripping and radio-frequency bins correction on grey-matter segmentation for voxel-based morphometry
    • Acosta-Cabronero J., Williams G.B., Pereira JMS, Pengas G., and Nestor P.J. The impact of skull-stripping and radio-frequency bins correction on grey-matter segmentation for voxel-based morphometry. NeuroImage 39 (2008) 1654-1665
    • (2008) NeuroImage , vol.39 , pp. 1654-1665
    • Acosta-Cabronero, J.1    Williams, G.B.2    Pereira JMS3    Pengas, G.4    Nestor, P.J.5
  • 3
    • 0033933649 scopus 로고    scopus 로고
    • Voxel-based morphometry-the methods
    • Ashburner J., and Friston K.J. Voxel-based morphometry-the methods. NeuroImage 11 (2000) 805-821
    • (2000) NeuroImage , vol.11 , pp. 805-821
    • Ashburner, J.1    Friston, K.J.2
  • 4
    • 0031987383 scopus 로고    scopus 로고
    • Fully automatic segmentation of the brain in MRI
    • Atkins M.S., and Mackiewich B.T. Fully automatic segmentation of the brain in MRI. IEEE Trans Med Imaging 17 (1998) 98-107
    • (1998) IEEE Trans Med Imaging , vol.17 , pp. 98-107
    • Atkins, M.S.1    Mackiewich, B.T.2
  • 5
    • 0035469969 scopus 로고    scopus 로고
    • Segmentation of brain 3D MR images using level sets and dense registration
    • Baillard C., Hellier P., and Barillot C. Segmentation of brain 3D MR images using level sets and dense registration. Med Image Anal 5 (2001) 185-194
    • (2001) Med Image Anal , vol.5 , pp. 185-194
    • Baillard, C.1    Hellier, P.2    Barillot, C.3
  • 6
    • 0036102198 scopus 로고    scopus 로고
    • Volumetric brain imaging findings in mood disorders
    • Beyer J.L., and Krishnan K.R..R. Volumetric brain imaging findings in mood disorders. Bipolar Disord 4 (2002) 89-104
    • (2002) Bipolar Disord , vol.4 , pp. 89-104
    • Beyer, J.L.1    Krishnan, K.R..R.2
  • 11
    • 0030175198 scopus 로고    scopus 로고
    • AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages
    • Cox R.W. AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages. Comput Biomed Res 29 (1996) 162-173
    • (1996) Comput Biomed Res , vol.29 , pp. 162-173
    • Cox, R.W.1
  • 12
    • 0032769093 scopus 로고    scopus 로고
    • Cortical surface-based analysis-I. Segmentation and surface reconstruction
    • Dale A.M., Fischl B., and Sereno M.I. Cortical surface-based analysis-I. Segmentation and surface reconstruction. NeuroImage 9 (1999) 179-194
    • (1999) NeuroImage , vol.9 , pp. 179-194
    • Dale, A.M.1    Fischl, B.2    Sereno, M.I.3
  • 13
    • 0030394712 scopus 로고    scopus 로고
    • Using a deformable surface model to obtain a shape representation of the cortex
    • Davatzikos C., and Bryan R.N. Using a deformable surface model to obtain a shape representation of the cortex. IEEE Trans Med Imaging 15 (1996) 785-795
    • (1996) IEEE Trans Med Imaging , vol.15 , pp. 785-795
    • Davatzikos, C.1    Bryan, R.N.2
  • 14
    • 33646124473 scopus 로고    scopus 로고
    • Statistical parametric mapping of brain morphology: sensitivity is dramatically increased by using brain-extracted images as inputs
    • Fein G., Landman B., Tran H., Barakos J., Moon K., Di Sclafani V., et al. Statistical parametric mapping of brain morphology: sensitivity is dramatically increased by using brain-extracted images as inputs. NeuroImage 30 (2006) 1187-1195
    • (2006) NeuroImage , vol.30 , pp. 1187-1195
    • Fein, G.1    Landman, B.2    Tran, H.3    Barakos, J.4    Moon, K.5    Di Sclafani, V.6
  • 15
    • 32544433477 scopus 로고    scopus 로고
    • Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location
    • Fennema-Notestine C., Ozyurt I.B., Clark C.P., Morris S., Bischoff-Grethe A., Bondi M.W., et al. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location. Hum Brain Mapp 27 (2006) 99-113
    • (2006) Hum Brain Mapp , vol.27 , pp. 99-113
    • Fennema-Notestine, C.1    Ozyurt, I.B.2    Clark, C.P.3    Morris, S.4    Bischoff-Grethe, A.5    Bondi, M.W.6
  • 16
    • 0035149435 scopus 로고    scopus 로고
    • Radial basis functions with compact support for elastic registration of medical images
    • Fornefett M., Rohr K., and Stiehl H.S. Radial basis functions with compact support for elastic registration of medical images. Image Vis Comput 19 (2001) 87-96
    • (2001) Image Vis Comput , vol.19 , pp. 87-96
    • Fornefett, M.1    Rohr, K.2    Stiehl, H.S.3
  • 17
    • 0343517060 scopus 로고    scopus 로고
    • A cooperative framework for segmentation of MRI brain scans
    • Germond L., Dojat M., Taylor C., and Garbay C. A cooperative framework for segmentation of MRI brain scans. Artif Intell Med 20 (2000) 77-93
    • (2000) Artif Intell Med , vol.20 , pp. 77-93
    • Germond, L.1    Dojat, M.2    Taylor, C.3    Garbay, C.4
  • 19
    • 0034870929 scopus 로고    scopus 로고
    • Cerebral asymmetry and the effects of sex and handedness on brain structure: a voxel-based morphometric analysis of 465 normal adult human brains
    • Good C.D., Johnsrude I., Ashburner J., Henson RNA, Friston K.J., and Frackowiak R.S..J. Cerebral asymmetry and the effects of sex and handedness on brain structure: a voxel-based morphometric analysis of 465 normal adult human brains. NeuroImage 14 (2001) 685-700
    • (2001) NeuroImage , vol.14 , pp. 685-700
    • Good, C.D.1    Johnsrude, I.2    Ashburner, J.3    Henson RNA4    Friston, K.J.5    Frackowiak, R.S..J.6
  • 21
    • 84945533209 scopus 로고    scopus 로고
    • The skull stripping problem in MRI solved by a single 3D watershed transform
    • Hahn H.K., and Peitgen H.O. The skull stripping problem in MRI solved by a single 3D watershed transform. Lect Notes Comput Sci 1935 (2000) 134-143
    • (2000) Lect Notes Comput Sci , vol.1935 , pp. 134-143
    • Hahn, H.K.1    Peitgen, H.O.2
  • 22
    • 0034240489 scopus 로고    scopus 로고
    • Automated segmentation of human brain MR images aided by fuzzy information granulation and fuzzy inference
    • Hata Y., Kobashi S., Hirano S., Kitagaki H., and Mori E. Automated segmentation of human brain MR images aided by fuzzy information granulation and fuzzy inference. IEEE Trans Syst Man Cybern C: Appl Rev 30 (2000) 381-395
    • (2000) IEEE Trans Syst Man Cybern C: Appl Rev , vol.30 , pp. 381-395
    • Hata, Y.1    Kobashi, S.2    Hirano, S.3    Kitagaki, H.4    Mori, E.5
  • 23
    • 0036288465 scopus 로고    scopus 로고
    • Automated cerebrum segmentation from three-dimensional sagittal brain MR images
    • Huh S., Ketter T.A., Sohn K.H., and Lee C.H. Automated cerebrum segmentation from three-dimensional sagittal brain MR images. Comput Biol Med 32 (2002) 311-328
    • (2002) Comput Biol Med , vol.32 , pp. 311-328
    • Huh, S.1    Ketter, T.A.2    Sohn, K.H.3    Lee, C.H.4
  • 24
    • 0035384136 scopus 로고    scopus 로고
    • A global optimisation method for robust affine registration of brain images
    • Jenkinson M., and Smith S. A global optimisation method for robust affine registration of brain images. Med Image Anal 5 (2001) 143-156
    • (2001) Med Image Anal , vol.5 , pp. 143-156
    • Jenkinson, M.1    Smith, S.2
  • 25
    • 33645117322 scopus 로고    scopus 로고
    • Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data
    • Jovicich J., Czanner S., Greve D., Haley E., van der Kouwe A., Gollub R., et al. Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data. NeuroImage 30 (2006) 436-443
    • (2006) NeuroImage , vol.30 , pp. 436-443
    • Jovicich, J.1    Czanner, S.2    Greve, D.3    Haley, E.4    van der Kouwe, A.5    Gollub, R.6
  • 26
    • 0242669240 scopus 로고    scopus 로고
    • A comprehensive study of gray matter loss in patients with Alzheimer's disease using optimized voxel-based morphometry
    • Karas G.B., Burton E.J., Rombouts SARB, van Schijndel R.A., O'Brien J.T., Scheltens P., et al. A comprehensive study of gray matter loss in patients with Alzheimer's disease using optimized voxel-based morphometry. NeuroImage 18 (2003) 895-907
    • (2003) NeuroImage , vol.18 , pp. 895-907
    • Karas, G.B.1    Burton, E.J.2    Rombouts SARB3    van Schijndel, R.A.4    O'Brien, J.T.5    Scheltens, P.6
  • 27
    • 0033201360 scopus 로고    scopus 로고
    • Elastic model-based segmentation of 3-D neuroradiological data sets
    • Kelemen A., Székely G., and Gerig G. Elastic model-based segmentation of 3-D neuroradiological data sets. IEEE Trans Med Imaging 18 (1999) 828-839
    • (1999) IEEE Trans Med Imaging , vol.18 , pp. 828-839
    • Kelemen, A.1    Székely, G.2    Gerig, G.3
  • 28
    • 0032071267 scopus 로고    scopus 로고
    • Unsupervised connectivity-based thresholding segmentation of midsagittal brain MR images
    • Lee C., Huh S., Ketter T.A., and Unser M. Unsupervised connectivity-based thresholding segmentation of midsagittal brain MR images. Comput Biol Med 28 (1998) 309-338
    • (1998) Comput Biol Med , vol.28 , pp. 309-338
    • Lee, C.1    Huh, S.2    Ketter, T.A.3    Unser, M.4
  • 29
    • 1542397929 scopus 로고    scopus 로고
    • Evaluation of automated and semi-automated skull-stripping algorithms using similarity index and segmentation error
    • Lee J.M., Yoon U., Nam S.H., Kim J.H., Kim I.Y., and Kim S.I. Evaluation of automated and semi-automated skull-stripping algorithms using similarity index and segmentation error. Comput Biol Med 33 (2003) 495-507
    • (2003) Comput Biol Med , vol.33 , pp. 495-507
    • Lee, J.M.1    Yoon, U.2    Nam, S.H.3    Kim, J.H.4    Kim, I.Y.5    Kim, S.I.6
  • 30
    • 0032769863 scopus 로고    scopus 로고
    • Fast, accurate, and reproducible automatic segmentation of the brain in T1-weighted volume MRI data
    • Lemieux L., Hagemann G., Krakow K., and Woermann F.G. Fast, accurate, and reproducible automatic segmentation of the brain in T1-weighted volume MRI data. Magn Reson Med 42 (1999) 127-135
    • (1999) Magn Reson Med , vol.42 , pp. 127-135
    • Lemieux, L.1    Hagemann, G.2    Krakow, K.3    Woermann, F.G.4
  • 32
    • 57049132825 scopus 로고    scopus 로고
    • Nonlinear registration based on the approximation of radial basis function coefficients
    • Liu J.X., Chen Y.S., and Chen L.F. Nonlinear registration based on the approximation of radial basis function coefficients. J Med Biol Eng 28 (2008) 119-126
    • (2008) J Med Biol Eng , vol.28 , pp. 119-126
    • Liu, J.X.1    Chen, Y.S.2    Chen, L.F.3
  • 33
    • 44449167622 scopus 로고    scopus 로고
    • Fully automatic segmentation of the brain from T1-weighted MRI using Bridge Burner algorithm
    • Mikheev A., Nevsky G., Govindan S., Grossman R., and Rusinek H. Fully automatic segmentation of the brain from T1-weighted MRI using Bridge Burner algorithm. J Magn Reson Imaging 27 (2008) 1235-1241
    • (2008) J Magn Reson Imaging , vol.27 , pp. 1235-1241
    • Mikheev, A.1    Nevsky, G.2    Govindan, S.3    Grossman, R.4    Rusinek, H.5
  • 34
    • 0035545737 scopus 로고    scopus 로고
    • A review of deformable surfaces: topology, geometry and deformation
    • Montagnat J., Delingette H., and Ayache N. A review of deformable surfaces: topology, geometry and deformation. Image Vis Comput 19 (2001) 1023-1040
    • (2001) Image Vis Comput , vol.19 , pp. 1023-1040
    • Montagnat, J.1    Delingette, H.2    Ayache, N.3
  • 35
    • 0018306059 scopus 로고
    • Threshold Selection Method from Gray-Level Histograms
    • Otsu N. Threshold Selection Method from Gray-Level Histograms. IEEE Trans Syst Man Cybern 9 (1979) 62-66
    • (1979) IEEE Trans Syst Man Cybern , vol.9 , pp. 62-66
    • Otsu, N.1
  • 36
    • 3042692091 scopus 로고    scopus 로고
    • Putting our heads together: a consensus approach to brain/non-brain segmentation in T1-weighted MR volumes
    • Rehm K., Schaper K., Anderson J., Woods R., Stoltzner S., and Rottenberg D. Putting our heads together: a consensus approach to brain/non-brain segmentation in T1-weighted MR volumes. NeuroImage 22 (2004) 1262-1270
    • (2004) NeuroImage , vol.22 , pp. 1262-1270
    • Rehm, K.1    Schaper, K.2    Anderson, J.3    Woods, R.4    Stoltzner, S.5    Rottenberg, D.6
  • 38
    • 0031060803 scopus 로고    scopus 로고
    • Surface-based labeling of cortical anatomy using a deformable atlas
    • Sandor S., and Leahy R. Surface-based labeling of cortical anatomy using a deformable atlas. IEEE Trans Med Imaging 16 (1997) 41-54
    • (1997) IEEE Trans Med Imaging , vol.16 , pp. 41-54
    • Sandor, S.1    Leahy, R.2
  • 39
    • 3843145299 scopus 로고    scopus 로고
    • Reliability of brain volumes from multicenter MRI acquisition: a calibration study
    • Schnack H.G., van Haren NEM, Pol HEH, Picchioni M., Weisbrod M., Sauer H., et al. Reliability of brain volumes from multicenter MRI acquisition: a calibration study. Hum Brain Mapp 22 (2004) 312-320
    • (2004) Hum Brain Mapp , vol.22 , pp. 312-320
    • Schnack, H.G.1    van Haren NEM2    Pol HEH3    Picchioni, M.4    Weisbrod, M.5    Sauer, H.6
  • 41
    • 0036624329 scopus 로고    scopus 로고
    • BrainSuite: An automated cortical surface identification tool
    • Shattuck D.W., and Leahy R.M. BrainSuite: An automated cortical surface identification tool. Med Image Anal 6 (2002) 129-142
    • (2002) Med Image Anal , vol.6 , pp. 129-142
    • Shattuck, D.W.1    Leahy, R.M.2
  • 43
    • 0031987382 scopus 로고    scopus 로고
    • A nonparametric method for automatic correction of intensity nonuniformity in MRI data
    • Sled J.G., Zijdenbos A.P., and Evans A.C. A nonparametric method for automatic correction of intensity nonuniformity in MRI data. IEEE Trans Med Imaging 17 (1998) 87-97
    • (1998) IEEE Trans Med Imaging , vol.17 , pp. 87-97
    • Sled, J.G.1    Zijdenbos, A.P.2    Evans, A.C.3
  • 45
    • 0036828879 scopus 로고    scopus 로고
    • Fast robust automated brain extraction
    • Smith S.M. Fast robust automated brain extraction. Hum Brain Mapp 17 (2002) 143-155
    • (2002) Hum Brain Mapp , vol.17 , pp. 143-155
    • Smith, S.M.1
  • 46
    • 0033646213 scopus 로고    scopus 로고
    • Automatic morphology-based brain segmentation (MBRASE) from MRI-T1 data
    • Stokking R., Vincken K.L., and Viergever M.A. Automatic morphology-based brain segmentation (MBRASE) from MRI-T1 data. NeuroImage 12 (2000) 726-738
    • (2000) NeuroImage , vol.12 , pp. 726-738
    • Stokking, R.1    Vincken, K.L.2    Viergever, M.A.3
  • 48
    • 0346847275 scopus 로고
    • Piecewise polynomial, positive definite and compactly supported radial functions of minimal degree
    • Wendland H. Piecewise polynomial, positive definite and compactly supported radial functions of minimal degree. Adv Comput Math 4 (1995) 389-396
    • (1995) Adv Comput Math , vol.4 , pp. 389-396
    • Wendland, H.1
  • 49
  • 50
    • 0032234514 scopus 로고    scopus 로고
    • Semiautomatic segmentation of brain exterior in magnetic resonance images driven by empirical procedures and anatomical knowledge
    • Worth A.J., Makris N., Meyer J.W., Caviness V.S., and Kennedy D.N. Semiautomatic segmentation of brain exterior in magnetic resonance images driven by empirical procedures and anatomical knowledge. Med Image Anal 2 (1998) 315-324
    • (1998) Med Image Anal , vol.2 , pp. 315-324
    • Worth, A.J.1    Makris, N.2    Meyer, J.W.3    Caviness, V.S.4    Kennedy, D.N.5
  • 51
    • 0001175680 scopus 로고    scopus 로고
    • Image segmentation using deformable models
    • Fitzpatrick J.M., and Sonka M. (Eds), SPIE Press, Bellingham, WA
    • Xu C., Pham D.L., and Prince J.L. Image segmentation using deformable models. In: Fitzpatrick J.M., and Sonka M. (Eds). Handbook of medical imaging (2000), SPIE Press, Bellingham, WA 129-174
    • (2000) Handbook of medical imaging , pp. 129-174
    • Xu, C.1    Pham, D.L.2    Prince, J.L.3
  • 52
    • 0034745001 scopus 로고    scopus 로고
    • Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm
    • Zhang Y.Y., Brady M., and Smith S. Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm. IEEE Trans Med Imaging 20 (2001) 45-57
    • (2001) IEEE Trans Med Imaging , vol.20 , pp. 45-57
    • Zhang, Y.Y.1    Brady, M.2    Smith, S.3
  • 53
    • 33748654013 scopus 로고    scopus 로고
    • Skull-stripping magnetic resonance brain images using a model-based level set
    • Zhuang A.H., Valentino D.J., and Toga A.W. Skull-stripping magnetic resonance brain images using a model-based level set. NeuroImage 32 (2006) 79-92
    • (2006) NeuroImage , vol.32 , pp. 79-92
    • Zhuang, A.H.1    Valentino, D.J.2    Toga, A.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.