Erratum: An updated phylogeny of oligotrich and choreotrich ciliates (Protozoa, Ciliophora, Spirotrichea) with representative taxa collected from Chinese coastal waters (Systematics and Biodiversity (2009) 7 (235-242) (doi:10.1017/S1477200009002989));An updated phylogeny of oligotrich and choreotrich ciliates (Protozoa, Ciliophora, Spirotrichea) with representative taxa collected from Chinese coastal waters

Systematics and Biodiversity

Volumn 7, Issue 2, 2009, Pages 235-242

  Gao, Shan ^a   Gong, Jun ^b,c   Lynn, Denis ^d   Lin, Xiaofeng ^b   Song, Weibo ^a  

^a OCEAN UNIVERSITY OF CHINA   (China)

^b SOUTH CHINA NORMAL UNIVERSITY   (China)

^c DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^d UNIVERSITY OF GUELPH   (Canada)

Author keywords

Ciliate; Oligotrichia; Parallelostrombidium; Phylogeny; Pseudotontonia; Spirostrombidium; Spirotontonia; SS rRNA

Indexed keywords

CHOREOTRICHIA; CILIOPHORA; FAVELLA; LABOEA; OLIGOTRICHIA; PARALLELOSTROMBIDIUM; PROTOZOA; PSEUDOTONTONIA; SPIROSTROMBIDIUM; SPIROTONTONIA; SPIROTRICHEA; STROMBIDIUM; STROMBIDIUM CONICUM; TINTINNOPSIS;

EID: 69949085336     PISSN: 14772000     EISSN: 14780933     Source Type: Journal    
DOI: 10.1017/S1477200009990077     Document Type: Erratum

References (32)

1. AGATHA, S. 2004a. A cladistic approach for the classification of oligotrichid ciliates (Ciliophora: Spirotricha). Acta Protozoologica 43, 201-217.
2. AGATHA, S. 2004b. Evolution of ciliary patterns in the Oligotrichida (Ciliophora, Spirotricha) and its taxonomic implications. Zoology 107, 153-168.
3. AGATHA, S. 2004c. New observations on the tontoniid ciliates Spirotontonia grandis (Suzuki and Han, 2000) Agatha, 2004 (Ciliophora, Oligotrichida, Tontoniidae); comparisonwith the similar Laboea strobila. European Journal of Protistology 40, 295-301.
4. AGATHA, S. & STRÜDER-KYPKE, M.C. 2007. Phylogeny of the order Choreotrichida (Ciliophora, Spirotricha, Oligotrichea) as inferred from morphology, ultrastructure, ontogenesis, and SSr- RNA gene sequences. European Journal of Protistology 43, 37-63.
5. AGATHA, S., STRÜDER-KYPKE, M.C., BERAN, A. & LYNN, D.H. 2005. Pelagostrobilidium neptuni (Montagnes and Taylor, 1994) and Strombidium biarmatum nov. spec. (Ciliophora, Oligotrichea): phylogenetic position inferred from morphology, ontogenesis, and gene sequence data. European Journal of Protistology 41, 65-83.
6. CASTRESANA, J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17, 540-552.
7. GAO, S., CHEN, Z., SHAO, C., LONG, H., AL-RASHEID, K.A.S. & SONG, W. 2008. Reconsideration of the phylogenetic position of Frontonia-related Peniculia (Ciliophora, Protozoa) inferred from the small subunit ribosomal RNA gene sequences. Acta Protozoologica 47, 47-54.
8. GONG, J., KIM, S., KIM, S., MIN, G., ROBERTS, D., WARREN, A. & CHOI, J. 2007. Taxonomic redescriptions of two ciliates, Protogastrostyla pulchra n. g., n. comb. and Hemigastrostyla enigmatica (Ciliophora: Spirotrichea, Stichotrichia), with phylogenetic analyses based on 18S and 28S rRNA gene sequences. Journal of Eukaryotic Microbiology 54, 468-478.
9. GUINDON, S. & GASCUEL, O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52, 696-704.
10. JANKOWSKI, A.W. 1978. Revision of a system of class Polyhymenophora (Spirotricha). Tezisky Doklady Zoologicheski Institut Akademia NAUK SSSR 39-40 (In Russian).
11. LYNN, D.H. 2008. The Ciliated Protozoa. Characterization, Classification, and Guide to the Literature. 3rd edn. Springer, Dordrecht. 605 pp.
12. LYNN, D.H. & GILRON, G.L. 1993. Strombidiid ciliates from coastal waters near Kingston harbour, Jamaica (Ciliophora, Oligotrichia, Strombidiidae). Journal of the Marine Biological Association of the United Kingdom 73, 47-65.
13. MEDLIN, L., ELWOOD, H.J., STICKEL, S. & SOGIN, M.L. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71, 491-499.
14. MONTAGNES, D.J.S., LYNN, D.H., STOECKER, D.K. & SMALL, E.B. 1988. Taxonomic descriptions of one new species and redescription of four species in the family Strombidiidae (Ciliophora, Oligotrichida). Journal of Protozoology 35, 189-197.
15. NYLANDER, J.A.A. 2004. MrModeltest. Evolutionary Biology Centre, Uppsala University.
16. PETZ, W. & FOISSNER, W. 1992. Morphology and morphogenesis of Strobilidium caudatum (Fromentel), Meseres corlissi n. sp., Halteria grandinella (Müller), and Strombidium rehwaldi n. sp., and a proposed phylogenetic system for oligotrich ciliates (Protozoa, Ciliophora). Journal of Protozoology 39, 159-176.
17. PETZ, W., SONG, W. & WILBERT, N. 1995. Taxonomy and ecology of the ciliate fauna (Protozoa, Ciliophora) in the endopagial and pelagial of the Weddell Sea, Antarctica. Stapfia 40, 1-223.
18. PIERCE, R.W. & TURNER, J.T. 1992. Ecology of planktonic ciliates in marine food webs. Review of Aquatic Sciences 6, 139-181.
19. RONQUIST, F.R. & HUELSENBECK, J.P. 2003. MrBayes 3: Bayesian phylogenetic under mixed models. Bioinformatics 19, 1572-1574.
20. SHIMODAIRA, H. 2002. An approximately unbiased test of phylogenetic tree selection. Systematic Biology 51, 492-508. (Pubitemid 35180700)
21. SHIMODAIRA, H. & HASEGAWA, M. 2001. Consel: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17, 1246-1247.
22. SNOEYENBOS-WEST, O.L.O., SALCEDO, T.,MCMANUS, G.B. & KATZ, L.A. 2002. Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci. International Journal of Systematic and Evolutionary Microbiology 52, 1901-1913.
23. SONG, W. & BRADBURY, P.C. 1998. Studies on some new and rare reported marine planktonic ciliates (Ciliophora: Oligotrichia) from coastal waters in north China. Journal of the Marine Biological Association of the United Kingdom 78, 767-794.
24. STRÜDER-KYPKE, M.C. & LYNN, D.H. 2003. Sequence analyses of the small subunit rRNA gene confirm the paraphyly of oligotrich ciliates sensu lato and support the monophyly of the subclasses Oligotrichia and Choreotrichia (Ciliophora, Spirotrichea). Journal of Zoology, London 260, 87-97.
25. STRÜDER-KYPKE, M.C. & LYNN, D.H. 2008. Morphological versus molecular data-phylogeny of tintinnid ciliates (Ciliophora, Choreotrichia) inferred from small subunit rRNA gene sequences. Denisia 23, 417-424.
26. SWOFFORD, D.L. 2002. PAUP*. Phylogenetic Analysis using Parsimony (* and other Methods). Sinauer Associates, Sunderland, MA.
27. THOMPSON, J.D., HIGGINS, D.G. & GIBSON, T.J. 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
28. XU, D. & SONG,W. 2005. Tintinnid ciliates from Qingdao (Protozoa, Ciliophora, Tintinida). Acta Zootaxonomica Sinica 30, 501-508 (in Chinese with English summary).
29. XU, D. & SONG, W. 2006. Hapantotypification and morphological redescription of the marine planktonic ciliate, Spirostrombidium cinctum (Kahl, 1932) Petz, Song & Wilbert, 1995 (Ciliophora: Oligotrichida). Acta Protozoologica 45, 17-25.
30. XU, D., SONG, W., WARREN, A., ROBERTS, D. & HU, X. 2007. Redescriptions of two marine planktonic ciliates from China, Parastrombidium faurei (Kahl, 1932) Maeda, 1986 and Strombidium capitatum (Leegaard, 1915) Kahl, 1932 (Ciliophora, Oligotrichea). European Journal of Protistology 43, 27-35.
31. YI, Z., SONG, W., SHAO, C., WARREN, A., AL-RASHEID, K.A.S., ROBERTS, D.M., MIAO, M., AL-QURAISHY, S.A. & CHEN, Z. 2008a. Phylogeny of some systematically uncertain urostyloids - Apokeronopsis, Metaurostylopsis, Thigmokeronopsis (Ciliophora, Stichotrichia) estimated with small subunit rRNA gene sequence information: discrepancies and agreements with morphological data. European Journal of Protistology, 44, 254-262.
32. YI, Z., SONG, W.,WARREN, A., ROBERTS, D., AL-RASHEID, K.A.S., CHEN, Z., AL-FARRAJ, S. & HU, X. 2008b. Amolecular phylogenetic investigation of Pseudoamphisiella and Parabirojimia (Protozoa, Ciliophora, Spirotrichea), two genera with ambiguous systematic positions. European Journal of Protistology 44, 45-53.