Prolyl isomerase Pin1 shares functional similarity with phosphorylated CTD interacting factor PCIF1 in vertebrate cells

Genes to Cells

Volumn 14, Issue 9, 2009, Pages 1105-1118

  Yunokuchi, Izumi ^a   Fan, Hong ^a   Iwamoto, Yu ^b   Araki, Chisato ^b   Yuda, Masamichi ^a   Umemura, Hiroyasu ^b   Harada, Fumio ^a   Ohkuma, Yoshiaki ^b,c   Hirose, Yutaka ^a,b,c  

^a KANAZAWA UNIVERSITY   (Japan)

^b UNIVERSITY OF TOYAMA   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; PEPTIDYLPROLYL ISOMERASE PIN1; PHOSPHORYLATED CARBOXY TERMINAL DOMAIN INTERACTING FACTOR 1; RNA POLYMERASE II; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL CYCLE REGULATION; CELL FUNCTION; CELL NUCLEUS; CELLULAR DISTRIBUTION; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME INHIBITION; GENE EXPRESSION REGULATION; GENE OVEREXPRESSION; GENE REPRESSION; HUMAN; HUMAN CELL; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN TARGETING; REPORTER GENE; TRANSCRIPTION INITIATION; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION REGULATION; UPREGULATION; VERTEBRATE;

ADAPTOR PROTEINS, SIGNAL TRANSDUCING; ANIMALS; B-LYMPHOCYTES; CELL LINE; CHICKENS; GENE EXPRESSION REGULATION; HELA CELLS; HUMANS; NUCLEAR PROTEINS; PEPTIDYLPROLYL ISOMERASE; PHOSPHORYLATION; RNA POLYMERASE II; TRANSFECTION;

VERTEBRATA;

EID: 69849109636     PISSN: 13569597     EISSN: 13652443     Source Type: Journal    
DOI: 10.1111/j.1365-2443.2009.01339.x     Document Type: Article

References (39)

1. Albert, A., Lavoie, S. & Vincent, M. (1999) A hyperphosphorylated form of RNA polymerase II is the major interphase antigen of the phosphoprotein antibody MPM-2 and interacts with the peptidyl-prolyl isomerase Pin1. J. Cell Sci. 112 (Pt 15), 2493-2500.
2. Beaudenon, S.L., Huacani, M.R., Wang, G., McDonnell, D.P. & Huibregtse, J.M. (1999) Rsp5 ubiquitin-protein ligase mediates DNA damage-induced degradation of the large subunit of RNA polymerase II in Saccharomyces cerevisiae. Mol. Cell. Biol. 19, 6972-6979.
3. Behzadnia, N., Golas, M.M., Hartmuth, K., Sander, B., Kastner, B., Deckert, J., Dube, P., Will, C.L., Urlaub, H., Stark, H. & Lührmann, R. (2007) Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes. EMBO J. 26, 1737-1748.
4. Chao, S.H., Greenleaf, A.L. & Price, D.H. (2001) Juglone, an inhibitor of the peptidyl-prolyl isomerase Pin1, also directly blocks transcription. Nucleic Acids Res. 29, 767-773.
5. Corden, J.L. (1990) Tails of RNA polymerase II. Trends Biochem. Sci. 15, 383-387.
6. Dahmus, M.E. (1996) Reversible phosphorylation of the C-terminal domain of RNA polymerase II. J. Biol. Chem. 271, 19009-19012.
7. Egloff, S. & Murphy, S. (2008) Cracking the RNA polymerase II CTD code. Trends Genet. 24, 280-288.
8. Fan, H., Sakuraba, K., Komuro, A., Kato, S., Harada, F. & Hirose, Y. (2003) PCIF1, a novel human WW domain-containing protein, interacts with the phosphorylated RNA polymerase II. Biochem. Biophys. Res. Commun. 301, 378-385.
9. Gavva, N.R., Gavva, R., Ermekova, K., Sudol, M. & Shen, C.J. (1997) Interaction of WW domains with hematopoietic transcription factor p45/ NF-E2 and RNA polymerase II. J. Biol. Chem. 272, 24105-24108.
10. Gilmour, D.S. (2009) Promoter proximal pausing on genes in metazoans. Chromosoma 118, 1-10.
11. Guenther, M.G., Levine, S.S., Boyer, L.A., Jaenisch, R. & Young, R.A. (2007) A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130, 77-88.
12. Haline-Vaz, T., Silva, T.C. & Zanchin, N.I. (2008). The human interferon-regulated ISG95 protein interacts with RNA polymerase II and shows methyltransferase activity. Biochem. Biophys. Res. Commun. 372, 719-724.
13. Hirose, Y., Iwamoto, Y., Sakuraba, K., Yunokuchi, I., Harada, F. & Ohkuma, Y. (2008) Human phosphorylated CTD-interacting protein, PCIF1, negatively modulates gene expression by RNA polymerase II. Biochem. Biophys. Res. Commun. 369, 449-455.
14. Hirose, Y. & Manley, J.L. (1998) RNA polymerase II is an essential mRNA polyadenylation factor. Nature 395, 93-96.
15. Hirose, Y. & Manley, J.L. (2000) RNA polymerase II and the integration of nuclear events. Genes Dev. 14, 1415-1429.
16. Hirose, Y. & Ohkuma, Y. (2007) Phosphorylation of the C-terminal domain of RNA polymerase II plays central roles in the integrated events of eucaryotic gene expression. J. Biochem. 141, 601-608.
17. Ingham, R.J., Colwill, K., Howard, C., et al. (2005) WW domains provide a platform for the assembly of multiprotein networks. Mol. Cell. Biol. 25, 7092-7106.
18. Komarnitsky, P., Cho, E.J. & Buratowski, S. (2000) Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev. 14, 2452-2460.
19. Komuro, A., Saeki, M. & Kato, S. (1999) Npw38, a novel nuclear protein possessing a WW domain capable of activating basal transcription. Nucleic Acids Res. 27, 1957-1965.
20. Krishnamurthy, S., Ghazy, M.A., Moore, C. & Hampsey, M. (2009) Functional interaction of the Ess1 prolyl isomerase with components of the RNA polymerase II initiation and termination machineries. Mol. Cell. Biol. 29, 2925-2934.
21. Lavoie, S.B., Albert, A.L., Handa, H., Vincent, M. & Bensaude, O. (2001) The peptidyl-prolyl isomerase Pin1 interacts with hSpt5 phosphorylated by Cdk9. J. Mol. Biol. 312, 675-685.
22. Lu, K.P., Hanes, S.D. & Hunter, T. (1996) A human peptidyl-prolyl isomerase essential for regulation of mitosis. Nature 380, 544-547.
23. Lu, K.P. & Zhou, X.Z. (2007) The prolyl isomerase PIN1: A pivotal new twist in phosphorylation signalling and disease. Nat. Rev. Mol. Cell Biol. 8, 904-916.
24. Lu, P.J., Zhou, X.Z., Shen, M. & Lu, K.P. (1999) Function of WW domains as phosphoserine- or phosphothreonine-binding modules. Science 283, 1325-1328.
25. Meinhart, A., Kamenski, T., Hoeppner, S., Baumli, S. & Cramer, P. (2005) A structural perspective of CTD function. Genes Dev. 19, 1401-1415.
26. Morris, D.P. & Greenleaf, A.L. (2000) The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II. J. Biol. Chem. 275, 39935-39943.
27. Morris, D.P., Phatnani, H.P. & Greenleaf, A.L. (1999) Phospho-carboxyl-terminal domain binding and the role of a prolyl isomerase in pre-mRNA 3′-end formation. J. Biol. Chem. 274, 31583-31587.
28. Muse, G.W., Gilchrist, D.A., Nechaev, S., Shah, R., Parker, J.S., Grissom, S.F., Zeitlinger, J. & Adelman, K. (2007) RNA polymerase is poised for activation across the genome. Nat. Genet. 39, 1507-1511.
29. Okazawa, H., Rich, T., Chang, A., Waragai, M., Kajikawa, M., Enokido, Y., Komuro, A., Kato, S., Shibata, M., Hatanaka, H., Mouradian, M.M., Sudol, M. & Kanazawa, I. (2002) Interaction between mutant ataxin-1 and PQBP-1 affects transcription and cell death. Neuron 34, 701-713.
30. Peng, T., Zintsmaster, J.S., Namanja, A.T. & Peng, J.W. (2007) Sequence-specific dynamics modulate recognition specificity in WW domains. Nat. Struct. Mol. Biol. 14, 325-331.
31. Phatnani, H.P. & Greenleaf, A.L. (2006) Phosphorylation and functions of the RNA polymerase II CTD. Genes Dev. 20, 2922-2936.
32. Sudol, M., Sliwa, K. & Russo, T. (2001) Functions of WW domains in the nucleus. FEBS Lett. 490, 190-195.
33. Verdecia, M.A., Bowman, M.E., Lu, K.P., Hunter, T. & Noel, J.P. (2000) Structural basis for phosphoserine-proline recognition by group IV WW domains. Nat. Struct. Biol. 7, 639-643.
34. Wilcox, C.B., Rossettini, A. & Hanes, S.D. (2004) Genetic interactions with C-terminal domain (CTD) kinases and the CTD of RNA Pol II suggest a role for ESS1 in transcription initiation and elongation in Saccharomyces cerevisiae. Genetics 167, 93-105.
35. Wu, X., Wilcox, C.B., Devasahayam, G., Hackett, R.L., Arévalo-Rodríguez, M., Cardenas, M.E., Heitman, J. & Hanes, S.D. (2000) The Ess1 prolyl isomerase is linked to chromatin remodeling complexes and the general transcription machinery. EMBO J. 19, 3727-3738.
36. Xu, Y.X. & Manley, J.L. (2007) Pin1 modulates RNA polymerase II activity during the transcription cycle. Genes Dev. 21, 2950-2962.
37. Xu, Y.X., Hirose, Y., Zhou, X.Z., Lu, K.P. & Manley, J.L. (2003) Pin1 modulates the structure and function of human RNA polymerase II. Genes Dev. 17, 2765-2776.
38. Yamada, T., Yamaguchi, Y., Inukai, N., Okamoto, S., Mura, T. & Handa, H. (2006) P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation. Mol. Cell 21, 227-237.
39. Zeitlinger, J., Stark, A., Kellis, M., Hong, J.W., Nechaev, S., Adelman, K., Levine, M. & Young, R.A. (2007) RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat. Genet. 39, 1512-1516.