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Volumn 25, Issue 18, 2009, Pages 2432-2433

TTA Lynx: A web-based service for analysis of actinomycete genes containing rare TTA codon

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE;

EID: 69849107218     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp402     Document Type: Article
Times cited : (17)

References (19)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 2
    • 0023972381 scopus 로고
    • New loci required for Streptomyces coelicolor morphological and physiological differentiation
    • Champness,W.C. (1988) New loci required for Streptomyces coelicolor morphological and physiological differentiation. J. Bacteriol., 170, 1168-1174.
    • (1988) J. Bacteriol , vol.170 , pp. 1168-1174
    • Champness, W.C.1
  • 3
    • 45449095900 scopus 로고    scopus 로고
    • Evolutionary flux of potentially bldA-dependent Streptomyces genes containing the rare leucine codon TTA
    • Chandra,G. and Chater,K.F. (2008) Evolutionary flux of potentially bldA-dependent Streptomyces genes containing the rare leucine codon TTA. Antonie Van Leeuwenhoek, 94, 111-126.
    • (2008) Antonie Van Leeuwenhoek , vol.94 , pp. 111-126
    • Chandra, G.1    Chater, K.F.2
  • 4
    • 33746865723 scopus 로고    scopus 로고
    • Streptomyces inside-out: A new perspective on the bacteria that provide us with antibiotics
    • Chater,K.F. (2006) Streptomyces inside-out: A new perspective on the bacteria that provide us with antibiotics. Philos. Trans. R. Soc. Lond. B Biol. Sci., 361, 761-768.
    • (2006) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.361 , pp. 761-768
    • Chater, K.F.1
  • 5
    • 33746908131 scopus 로고    scopus 로고
    • The evolution of development in Streptomyces analysed by genome comparisons
    • Chater,K.F. and Chandra,G. (2006) The evolution of development in Streptomyces analysed by genome comparisons. FEMS Microbiol. Rev. 30, 651-672.
    • (2006) FEMS Microbiol. Rev , vol.30 , pp. 651-672
    • Chater, K.F.1    Chandra, G.2
  • 6
    • 27144472499 scopus 로고    scopus 로고
    • Intragenic position of UUA codons in streptomycetes
    • Fuglsang,A. (2005) Intragenic position of UUA codons in streptomycetes. Microbiology, 151, 3150-3152.
    • (2005) Microbiology , vol.151 , pp. 3150-3152
    • Fuglsang, A.1
  • 7
    • 33846504706 scopus 로고    scopus 로고
    • A silent polymorphism in the MDR1 gene changes substrate specificity
    • Kimchi-Sarfaty,C. et al. (2007) A silent polymorphism in the MDR1 gene changes substrate specificity. Science, 315, 525-528.
    • (2007) Science , vol.315 , pp. 525-528
    • Kimchi-Sarfaty, C.1
  • 8
    • 0023503633 scopus 로고
    • Pleiotropic morphological and antibiotic deficiencies result from mutations in a gene encoding a transfer RNA-like product in Streptomyces coelicolor A3(2)
    • Lawlor,E.J. et al. (1987) Pleiotropic morphological and antibiotic deficiencies result from mutations in a gene encoding a transfer RNA-like product in Streptomyces coelicolor A3(2). Genes Dev. 1, 1305-1310.
    • (1987) Genes Dev , vol.1 , pp. 1305-1310
    • Lawlor, E.J.1
  • 9
    • 0026029699 scopus 로고
    • TTA codons in some genes prevent their expression in a class of developmental, antibiotic-negative, Streptomyces mutants
    • Leskiw,B.K. et al. (1991) TTA codons in some genes prevent their expression in a class of developmental, antibiotic-negative, Streptomyces mutants. Proc. Natl Acad. Sci. USA, 88, 2461-2465.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 2461-2465
    • Leskiw, B.K.1
  • 10
    • 33845545433 scopus 로고    scopus 로고
    • A genetic and bioinformatic analysis of Streptomyces coelicolor genes containing TTA codons, possible targets for regulation by a developmentally significant tRNA
    • Li,W. et al. (2007) A genetic and bioinformatic analysis of Streptomyces coelicolor genes containing TTA codons, possible targets for regulation by a developmentally significant tRNA. FEMS Microbiol. Lett., 266, 20-28.
    • (2007) FEMS Microbiol. Lett , vol.266 , pp. 20-28
    • Li, W.1
  • 11
    • 0017110012 scopus 로고
    • A morphological and genetic mapping study of bald colony mutants of Streptomyces coelicolor
    • Merrick,M.J. (1976) A morphological and genetic mapping study of bald colony mutants of Streptomyces coelicolor. J. Gen. Microbiol., 96, 299-315.
    • (1976) J. Gen. Microbiol , vol.96 , pp. 299-315
    • Merrick, M.J.1
  • 12
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: An automatic genome annotation and pathway reconstruction server
    • Moriya,Y. et al. (2007) KAAS: An automatic genome annotation and pathway reconstruction server. Nucleic Acids Res., 35, W182-W185.
    • (2007) Nucleic Acids Res , vol.35
    • Moriya, Y.1
  • 13
    • 0021930102 scopus 로고
    • Phage-mediated cloning of bldA, a region involved in Streptomyces coelicolor morphological development, and its analysis by genetic complementation
    • Piret,J.M. and Chater,K.F. (1985) Phage-mediated cloning of bldA, a region involved in Streptomyces coelicolor morphological development, and its analysis by genetic complementation. J. Bacteriol., 163, 965-972.
    • (1985) J. Bacteriol , vol.163 , pp. 965-972
    • Piret, J.M.1    Chater, K.F.2
  • 14
    • 33645057187 scopus 로고    scopus 로고
    • Expression of the regulatory protein LndI for landomycin E production in Streptomyces globisporus 1912 is controlled by the availability of tRNA for the the rare UUA codon
    • Rebets,Y. et al. (2006) Expression of the regulatory protein LndI for landomycin E production in Streptomyces globisporus 1912 is controlled by the availability of tRNA for the the rare UUA codon. FEMS Microbiol. Lett., 256, 30-37.
    • (2006) FEMS Microbiol. Lett , vol.256 , pp. 30-37
    • Rebets, Y.1
  • 15
    • 18644368714 scopus 로고    scopus 로고
    • The Bioperl toolkit: Perl modules for the life sciences
    • Stajich,J.E. et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res., 12, 1611-1618.
    • (2002) Genome Res , vol.12 , pp. 1611-1618
    • Stajich, J.E.1
  • 16
    • 18644378331 scopus 로고    scopus 로고
    • The generic genome browser: A building block for a model organism system database
    • Stein,L.D. et al. (2002) The generic genome browser: A building block for a model organism system database. Genome Res., 12, 1599-5610.
    • (2002) Genome Res , vol.12 , pp. 1599-5610
    • Stein, L.D.1
  • 17
    • 0042902833 scopus 로고    scopus 로고
    • The COG database: An updated version includes eukaryotes
    • Tatusov,R.L. et al. (2003) The COG database: An updated version includes eukaryotes. BMC Bioinformatics, 4, 41.
    • (2003) BMC Bioinformatics , vol.4 , pp. 41
    • Tatusov, R.L.1
  • 18
    • 0036126158 scopus 로고    scopus 로고
    • The positive activator of cephamycin C and clavulanic acid production in Streptomyces clavuligerus is mistranslated in a bldA mutant
    • Trepanier,N.K. et al. (2002) The positive activator of cephamycin C and clavulanic acid production in Streptomyces clavuligerus is mistranslated in a bldA mutant. Microbiology, 148, 643-656.
    • (2002) Microbiology , vol.148 , pp. 643-656
    • Trepanier, N.K.1
  • 19
    • 34548746905 scopus 로고    scopus 로고
    • Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylum
    • Ventura,M. et al. (2007) Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylum. Microbiol. Mol. Biol. Rev. 71, 495-547.
    • (2007) Microbiol. Mol. Biol. Rev , vol.71 , pp. 495-547
    • Ventura, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.