Intragenic position of UUA codons in streptomycetes

Microbiology

Volumn 151, Issue 10, 2005, Pages 3150-3152

  Fuglsang, Anders ^a,b  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b Norwegian Medicines Agency   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; ARGININE; LEUCINE; MESSENGER RNA; TRANSFER RNA;

BACTERIAL GENOME; BACTERIUM CULTURE; BIOINFORMATICS; CODON; ESCHERICHIA COLI; LIFE CYCLE; MUTATIONAL ANALYSIS; NONHUMAN; NOTE; PREDICTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; SPOROGENESIS; START CODON; STOP CODON; STREPTOMYCES COELICOLOR; STREPTOMYCETACEAE; VEGETATIVE GROWTH;

CODON; CODON, INITIATOR; GENES, BACTERIAL; LEUCINE; MODELS, GENETIC; PROTEIN BIOSYNTHESIS; RNA, TRANSFER; STREPTOMYCES;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; STREPTOMYCES COELICOLOR; STREPTOMYCETACEAE; STREPTOMYCINEAE;

EID: 27144472499     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.28352-0     Document Type: Note

References (12)

1. Chater, K. F. (1993). Genetics of differentiation in Streptomyces. Annu Rev Microbiol 47, 685-713.
2. Chen, G. F. & Inouye, M. (1990). Suppression of the negative effect of minor arginine codons on gene expression; preferential usage of minor codons within the first 25 codons of the Escherichia coli genes. Nucleic Acids Res 18, 1465-1473.
3. Chen, G. T. & Inouye, M. (1994). Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli. Genes Dev 1, 2641-2652.
4. Ikemura, T. (1981). Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. J Mol Biol 151, 389-409.
5. Lawlor, E. J., Baylis, H. A. & Chater, K. F. (1987). Pleiotropic morphological and antibiotic deficiencies result from mutations in a gene encoding a tRNA-like product in Streptomyces coelicolor A3(2). Genes Dev 1, 1305-1310.
6. Leskiw, B. K., Bibb, M. J. & Chater, K. F. (1991a). The use of a rare codon specifically during development? Mol Microbiol 5, 2861-2867.
7. Leskiw, B. K., Lawlor, E. J., Fernandez-Abalos, J. M. & Chater, K. F. (1991b). TTA codons in some genes prevent their expression in a class of developmental, antibiotic-negative, Streptomyces mutants. Proc Natl Acad Sci U S A 88, 2461-2465.
8. Leskiw, B. K., Mah, R., Lawlor, E. J. & Chater, K. F. (1993). Accumulation of bldA-specified tRNA is temporally regulated in Streptomyces coelicolor A3(2). J Bacteriol 175, 1995-2005.
9. Sharp, P. M. & Li, W.-H. (1987). The Codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15, 1281-1295.
10. Ueda, Y., Taguchi, S., Nishiyama, K., Kumagai, I. & Miura, K. (1993). Effect of a rare leucine codon, TTA, on expression of a foreign gene in Streptomyces lividans. Biochim Biophys Acta 1172, 262-266.
11. Wright F. & Bibb, M. J. (1992). Codon usage in the G+C-rich Streptomyces genome. Gene 11, 55-65.
12. Wu, G., Culley, D. E. & Zhang, W. (2005). Predicted highly expressed genes in the genomes of Streptomyces coelicolor and Streptomyces avermitilis and the implications for their metabolism. Microbiology 15, 2175-2187.