-
1
-
-
0032441150
-
Cluster Analysis and Display of Genome-wide Expression
-
24541 9843981 10.1073/pnas.95.25.14863
-
Eisen M Spellman P Brown P Botstein D Cluster Analysis and Display of Genome-wide Expression PNAS 1998, 95:14863-14868 24541 9843981 10.1073/ pnas.95.25.14863
-
(1998)
PNAS
, vol.95
, pp. 14863-14868
-
-
Eisen, M.1
Spellman, P.2
Brown, P.3
Botstein, D.4
-
2
-
-
0033536012
-
Broad Patterns of Gene Expression Revealed by Clustering Analysis of Tumor and Normal Colon Tissues Probed by Oligonucleotide Arrays
-
21986 10359783 10.1073/pnas.96.12.6745
-
Alon U Barkai N Notterman D Gish K Ybarra S Mack D Levine A Broad Patterns of Gene Expression Revealed by Clustering Analysis of Tumor and Normal Colon Tissues Probed by Oligonucleotide Arrays Proc Natl Acad Sci 1999, 96:6745-6750 21986 10359783 10.1073/pnas.96.12.6745
-
(1999)
Proc Natl Acad Sci
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.7
-
3
-
-
0036203115
-
A mixture model-based approach to the clustering of microarray expression data
-
10.1093/bioinformatics/18.3.413 11934740
-
McLachlan G Bean R Peel D A mixture model-based approach to the clustering of microarray expression data Bioinformatics 2002, 18(3):413-422 10.1093/bioinformatics/18.3.413 11934740
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 413-422
-
-
McLachlan, G.1
Bean, R.2
Peel, D.3
-
4
-
-
0035979259
-
Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments
-
10.1073/pnas.161273698
-
Kerr M Churchill G Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments Proceedings of the National Academy of Sciences 2001, 98(16):8961 10.1073/pnas.161273698
-
(2001)
Proceedings of the National Academy of Sciences
, vol.98
, Issue.16
, pp. 8961
-
-
Kerr, M.1
Churchill, G.2
-
5
-
-
0034334064
-
Assessing reliability of gene clusters from gene expression data
-
10.1007/s101420000019 11793234
-
Zhang K Zhao H Assessing reliability of gene clusters from gene expression data Funct Integr Genomics 2000, 1:156-173 10.1007/ s101420000019 11793234
-
(2000)
Funct Integr Genomics
, vol.1
, pp. 156-173
-
-
Zhang, K.1
Zhao, H.2
-
6
-
-
0034616930
-
Functional Discovery via a Compendium of Expression Profiles
-
10.1016/S0092-8674(00)00015-5 10929718
-
Hughes T Marton M Jones A Roberts C Stoughton R Armour C Bennett H Coffey E Dai H He Y Kidd M King A Meyer M Slade D Lum P Stepaniants S Shoemaker D Gachotte D Chakraburtty K Simon J Bard M Friend S Functional Discovery via a Compendium of Expression Profiles Cell 2000, 102:109-126 10.1016/S0092-8674(00)00015-5 10929718
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.1
Marton, M.2
Jones, A.3
Roberts, C.4
Stoughton, R.5
Armour, C.6
Bennett, H.7
Coffey, E.8
Dai, H.9
He, Y.10
Kidd, M.11
King, A.12
Meyer, M.13
Slade, D.14
Lum, P.15
Stepaniants, S.16
Shoemaker, D.17
Gachotte, D.18
Chakraburtty, K.19
Simon, J.20
Bard, M.21
Friend, S.22
more..
-
7
-
-
2942573099
-
Statistical significance for hierarchical clustering in genetic association and microarray expression studies
-
328091 14667254 10.1186/1471-2105-4-62
-
Levenstien M Yang Y Ott J Statistical significance for hierarchical clustering in genetic association and microarray expression studies BMC bioinformatics 2003, 4:62 328091 14667254 10.1186/1471-2105-4-62
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 62
-
-
Levenstien, M.1
Yang, Y.2
Ott, J.3
-
9
-
-
0035024021
-
Validating clustering for gene expression data
-
10.1093/bioinformatics/17.4.309 11301299
-
Yeung K Haynor D Ruzzo W Validating clustering for gene expression data Bioinformatics 2001, 17:309-318 10.1093/bioinformatics/17.4.309 11301299
-
(2001)
Bioinformatics
, vol.17
, pp. 309-318
-
-
Yeung, K.1
Haynor, D.2
Ruzzo, W.3
-
11
-
-
34248156805
-
Bayesian clustering of many GARCH models
-
10.1080/07474930701220576
-
Bauwens L Rombouts J Bayesian clustering of many GARCH models Econometric Reviews 2007, 26(2):365-386 10.1080/07474930701220576
-
(2007)
Econometric Reviews
, vol.26
, Issue.2
, pp. 365-386
-
-
Bauwens, L.1
Rombouts, J.2
-
13
-
-
34547535024
-
Bayesian Unsupervised Signal Classification by Dirichlet Process Mixtures of Gaussian Processes
-
Jackson E Davy M Doucet A Fitzgerald W Bayesian Unsupervised Signal Classification by Dirichlet Process Mixtures of Gaussian Processes IEEE International Conference on Acoustics, Speech and Signal Processing, 2007. ICASSP 2007 2007, 3.
-
(2007)
IEEE International Conference on Acoustics, Speech and Signal Processing, 2007. ICASSP 2007
, vol.3
-
-
Jackson, E.1
Davy, M.2
Doucet, A.3
Fitzgerald, W.4
-
14
-
-
1842532350
-
The Bayesian revolution in genetics
-
10.1038/nrg1318 15131649
-
Beaumont M Rannala B The Bayesian revolution in genetics Nat Rev Genet 2004, 5(4):251-261 10.1038/nrg1318 15131649
-
(2004)
Nat Rev Genet
, vol.5
, Issue.4
, pp. 251-261
-
-
Beaumont, M.1
Rannala, B.2
-
15
-
-
31844452656
-
Density Modeling and Clustering Using Dirichlet Diffusion Trees
-
Bernardo J, Bayarri M, Berger J, Dawid A, Heckerman D, Smith A, West M
-
Neal R Density Modeling and Clustering Using Dirichlet Diffusion Trees Bayesian Statistics Bernardo J, Bayarri M, Berger J, Dawid A, Heckerman D, Smith A, West M 2003, 7:619-629
-
(2003)
Bayesian Statistics
, vol.7
, pp. 619-629
-
-
Neal, R.1
-
16
-
-
28044449342
-
Bayesian coclustering of Anopheles gene expression time series: Study of immune defense response to multiple experimental challenges
-
10.1073/pnas.0408393102
-
Heard N Holmes C Stephens D Hand D Dimopoulos G Bayesian coclustering of Anopheles gene expression time series: Study of immune defense response to multiple experimental challenges Proceedings of the National Academy of Sciences 2005, 102(47):16939-16944 10.1073/pnas.0408393102
-
(2005)
Proceedings of the National Academy of Sciences
, vol.102
, Issue.47
, pp. 16939-16944
-
-
Heard, N.1
Holmes, C.2
Stephens, D.3
Hand, D.4
Dimopoulos, G.5
-
17
-
-
33645507298
-
A Quantitative Study of Gene Regulation Involved in the Immune Response of Anopheline Mosquitoes: An Application of Bayesian Hierarchical Clustering of Curves
-
10.1198/016214505000000187
-
Heard N Holmes C Stephens D A Quantitative Study of Gene Regulation Involved in the Immune Response of Anopheline Mosquitoes: An Application of Bayesian Hierarchical Clustering of Curves JOURNAL-AMERICAN STATISTICAL ASSOCIATION 2006, 101(473):18 10.1198/016214505000000187
-
(2006)
JOURNAL-AMERICAN STATISTICAL ASSOCIATION
, vol.101
, Issue.473
, pp. 18
-
-
Heard, N.1
Holmes, C.2
Stephens, D.3
-
20
-
-
79955803023
-
The Infinite Gaussian Mixture Model
-
MIT Press; Cambridge, Massachusetts Solla SA, Leen TK, Muller KR
-
Rasmussen CE The Infinite Gaussian Mixture Model Advances in Neural Information Processing Systems 12 MIT Press; Cambridge, Massachusetts Solla SA, Leen TK, Muller KR 2000 554-560
-
(2000)
Advances in Neural Information Processing Systems 12
, pp. 554-560
-
-
Rasmussen, C.E.1
-
22
-
-
84950632109
-
Objective criteria for the evaluation of clustering methods
-
10.2307/2284239
-
Rand W Objective criteria for the evaluation of clustering methods Journal of the American Statistical association 1971, 846-850 10.2307/ 2284239
-
(1971)
Journal of the American Statistical Association
, pp. 846-850
-
-
Rand, W.1
-
23
-
-
0037667290
-
Clustering gene-expression data with repeated measurements
-
156590 12734014 10.1186/gb-2003-4-5-r34
-
Yeung K Medvedovic M Bumgarner R Clustering gene-expression data with repeated measurements Genome Biol 2003, 4(5):R34 156590 12734014 10.1186/ gb-2003-4-5-r34
-
(2003)
Genome Biol
, vol.4
, Issue.5
-
-
Yeung, K.1
Medvedovic, M.2
Bumgarner, R.3
-
24
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
10.1126/science.292.5518.929 11340206
-
Ideker T Thorsson V Ranish J Christmas R Buhler J Eng J Bumgarner R Goodlett D Aebersold R Hood L Integrated genomic and proteomic analyses of a systematically perturbed metabolic network Science 2001, 292(5518):929-934 10.1126/science.292.5518.929 11340206
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.3
Christmas, R.4
Buhler, J.5
Eng, J.6
Bumgarner, R.7
Goodlett, D.8
Aebersold, R.9
Hood, L.10
-
25
-
-
47349103055
-
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
-
2459189 18564431 10.1186/1471-2105-9-288
-
Yao J Chang C Salmi M Hung Y Loraine A Roux S Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient BMC bioinformatics 2008, 9:288 2459189 18564431 10.1186/ 1471-2105-9-288
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 288
-
-
Yao, J.1
Chang, C.2
Salmi, M.3
Hung, Y.4
Loraine, A.5
Roux, S.6
-
26
-
-
33947105614
-
Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid signalling pathway to cause disease
-
1817624 17304219 10.1038/sj.emboj.7601575
-
de Torres-Zabala M Truman W Bennett MH Lafforgue G Mansfield JW Egea PR Böge L Grant M Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid signalling pathway to cause disease EMBO Journal 2007, 26:1434-1443 1817624 17304219 10.1038/sj.emboj.7601575
-
(2007)
EMBO Journal
, vol.26
, pp. 1434-1443
-
-
de Torres-Zabala, M.1
Truman, W.2
Bennett, M.H.3
Lafforgue, G.4
Mansfield, J.W.5
Egea, P.R.6
Böge, L.7
Grant, M.8
-
28
-
-
34548409607
-
Automated discovery of functional generality of human gene expression programs
-
1941755 17696603 10.1371/journal.pcbi.0030148
-
Gerber G Dowell R Jaakkola T Gifford D Sidow A Automated discovery of functional generality of human gene expression programs PLoS Comput Biol 2007, 3(8):e148 1941755 17696603 10.1371/journal.pcbi.0030148
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.8
-
-
Gerber, G.1
Dowell, R.2
Jaakkola, T.3
Gifford, D.4
Sidow, A.5
-
29
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
10.1093/bioinformatics/btl567 17098774
-
Falcon S Gentleman R Using GOstats to test gene lists for GO term association Bioinformatics 2007, 23(2):257 10.1093/bioinformatics/btl567 17098774
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 257
-
-
Falcon, S.1
Gentleman, R.2
-
30
-
-
33749428430
-
Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes
-
1590054 16945146 10.1186/1471-2105-7-397
-
Datta S Datta S Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes BMC bioinformatics 2006, 7:397 1590054 16945146 10.1186/1471-2105-7-397
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 397
-
-
Datta, S.1
Datta, S.2
-
31
-
-
33947187591
-
AJ domain virulence effector of Pseudomonas syringae remodels host chloroplasts and suppresses defenses
-
1857343 17350264 10.1016/j.cub.2007.02.028
-
Jelenska J Yao N Vinatzer B Wright C Brodsky J Greenberg J AJ domain virulence effector of Pseudomonas syringae remodels host chloroplasts and suppresses defenses Current Biology 2007, 17(6):499-508 1857343 17350264 10.1016/j.cub.2007.02.028
-
(2007)
Current Biology
, vol.17
, Issue.6
, pp. 499-508
-
-
Jelenska, J.1
Yao, N.2
Vinatzer, B.3
Wright, C.4
Brodsky, J.5
Greenberg, J.6
|