Bayesian coclustering of Anopheles gene expression time series: Study of immune defense response to multiple experimental challenges

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 47, 2005, Pages 16939-16944

  Heard, Nicholas A ^a   Holmes, Christopher C ^b,c   Stephens, David A ^a   Hand, David J ^a   Dimopoulos, George ^d  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c MRC MAMMALIAN GENETICS UNIT   (United Kingdom)

^d JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

Expectation Maximization; Markov chain Monte Carlo; Microarray; Model based clustering

Indexed keywords

ALGORITHM; ANOPHELES; ANOPHELES GAMBIAE; ARTICLE; BAYES THEOREM; GENE CLUSTER; GENE CONTROL; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENETIC TRANSCRIPTION; IMMUNITY; NONHUMAN; PRIORITY JOURNAL;

ALGORITHMS; ANIMALS; ANOPHELES GAMBIAE; BAYES THEOREM; CELL LINE; CLUSTER ANALYSIS; GENE EXPRESSION; GENE EXPRESSION PROFILING; IMMUNITY; MODELS, GENETIC; ZYMOSAN;

ANOPHELES GAMBIAE;

EID: 28044449342     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0408393102     Document Type: Article

References (18)

1. Dimopoulos, G., Seeley, D., Wolf, A. & Kafatos, F. C. (1998) EMBO J. 17, 6115-6123.
2. Christophides, G. K., Zdobnov, E., Barillas-Mury, C., Birney, E., Blandin, S., Blass, C., Brey, P. T., Collins, F. H., Danielli, A., Dimopoulos, G., et al. (2002) Science 298, 159-165.
3. Alphey, L., Beard, C. B., Billirigsley, P., Coetzee, M., Crisanti, A., Curtis, C., Eggleston, P., Godfray, C., Hemingway, J., Jacobs-Lorena, M., et al. (2002) Science 298, 119-121.
4. Kumar, S., Christophides, G. K., Cantera, R., Charles, B., Han, Y. S., Meister, S., Dimopoulos, G., Kafatos, F. C. & Barillas-Mury, C. (2003) Proc. Natl. Acad. Sci. USA 100, 14139-14144.
5. Dimopoulos, G., Christophides, G. K., Meister, S., Schultz, J., White, K. P., Barillas-Mury, C. & Kafatos, F. C. (2002) Proc. Natl. Acad. Sci. USA 99, 8814-8819.
6. Heard, N. A., Holmes, C. C. & Stephens, D. A. (2005) J. Am. Stat. Assoc., in press.
7. Wakefield, J., Zhou, C. & Self, S. (2003) in Bayesian Statistics 7: Proceedings of the Seventh Valencia International Meeting, eds. Bernardo, J. M., Bayarri, M. J., Berger, J. O., Dawid, A. P., Heckerman, D., Smith, A. F. & West, M. (Clarendon, Oxford).
8. Ramoni, M., Sebastiani, P. & Kohane, P. R. (2002) Free. Natl. Acad. Sci. USA 99, 9121-9126.
9. Yeung, K. Y., Fraley, C., Murua, A., Raftery, A. E. & Ruzzo, W. L. (2001) Bioinformatics 17, 977-987.
10. Luan, Y. & Li, H. (2003) Bioinformatics 19, 474-482.
11. Lu, X., Zhang, W., Qin, Z. S., Kwast, K. E. & Liu, J. S. (2004) Nucleic Acids Res. 32, 447-455.
12. Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. (1998) Proc. Natl. Acad. Sci. USA 95, 14863-14868.
13. Wei, G. C. G. & Tanner, M. (1990) J. Am. Stat. Assoc. 85, 699-704.
14. Leclerc, V. & Reichart, J. M. (2004) Immunol. Rev. 198, 59-71.
15. Dimopoulos, G. (2003) Cell Microbiol. 5, 3-14.
16. Cerenius, L. & Soderhall, K. (2004) Immunol. Rev. 198, 116-126.
17. Blandin, S., Shiao, S., Moita, L., Janse, C., Waters, A., Kafatos, F. & Levashina, E. (2004) Cell 116, 661-670.
18. Vizioli, J., Bulet, P., Hoffmann, J., Kafatos, F., Müller, H. & Dimopoulos, G. (2001) Proc. Natl. Acad. Sci. USA 98, 12630-12635.