Histidine affinity chromatography of homo-oligonucleotides. Role of multiple interactions on retention

Biomedical Chromatography

Volumn 23, Issue 7, 2009, Pages 745-753

  Sousa, A ^a   Sousa, F ^a   Prazeres, D M F ^b   Queiroz, J A ^a  

^a UNIVERSITY OF BEIRA INTERIOR   (Portugal)

^b Instituto de Biotecnologia e Bioengenharia Lisboa   (Portugal)

Author keywords

Affinity chromatography; Histidine agarose support; Multiple interactions; Oligonucleotides; Secondary structure

Indexed keywords

AMINO ACIDS; DNA; LIGANDS; OLIGONUCLEOTIDES; PURIFICATION;

AGAROSE; BIORECOGNITION; DIFFERENT SIZES; HISTIDINE LIGANDS; HISTIDINE-AGARISE SUPPORT; MULTIPLE INTERACTIONS; NUCLEIC ACID BASIS; PLASMID DNA; PLASMID PURIFICATION; SECONDARY STRUCTURES;

AFFINITY CHROMATOGRAPHY;

ADENINE; CYTOSINE; GUANINE; HISTIDINE; NUCLEIC ACID; OLIGONUCLEOTIDE; PLASMID DNA; POLYA OLIGONUCLEOTIDE; POLYG OLIGONUCLEOTIDE; SODIUM CHLORIDE; THYMINE; UNCLASSIFIED DRUG; URACIL; AMMONIUM SULFATE; POLYRIBONUCLEOTIDE; POLYTHYMIDYLIC ACID;

AFFINITY CHROMATOGRAPHY; ARTICLE; BINDING AFFINITY; DNA PURIFICATION; ENZYME SYNTHESIS; GEL CHROMATOGRAPHY; HYDROPHOBICITY; MOLECULAR WEIGHT; NUCLEIC ACID ANALYSIS; NUCLEID ACID RETENTION; PH; PROTEIN CONFORMATION; PROTEIN DNA BINDING; PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; TEMPERATURE; CHEMISTRY; CONFORMATION; ISOLATION AND PURIFICATION; METHODOLOGY;

AMMONIUM SULFATE; CHROMATOGRAPHY, AFFINITY; HISTIDINE; HYDROGEN-ION CONCENTRATION; NUCLEIC ACID CONFORMATION; POLY T; POLYRIBONUCLEOTIDES; TEMPERATURE;

EID: 69749128313     PISSN: 02693879     EISSN: 10990801     Source Type: Journal    
DOI: 10.1002/bmc.1179     Document Type: Article

References (32)

1. Allers J and Shamoo Y. Structure-based analysis of protein-RNA interactions using the program ENTANGLE. Journal of Molecular Biology 2001; 311(1): 75-86.
2. Campbell NH and Parkinson GN. Crystallographic studies of quadruplex nucleic acids. Methods 2007; 43(4): 252-263.
3. Choo Y and Klug A. Physical basis of a protein-DNA recognition code. Current Opinion in Structural Biology 1997; 7(1): 117-125.
4. Delattre C, Michaud P, Hamze K, Courtois B, Courtois J and Vijayalakshmi MA. Purification of oligouronides using hollow-fiber membrane functionalised with L-histidine. Journal of Chromatography A 2005; 1099(1-2): 121-126.
5. Delattre C, Kamalanathan AS, Michaud P and Vijayalakshmi MA. Purification of oligouronides by immobilized l-histidine pseudoaffinity chromatography. Journal of Chromatography B 2008; 861(2): 181-185.
6. Diogo MM, Queiroz JA, Monteiro GA and Prazeres DMF. Separation and analysis of plasmid denatured forms using hydrophobic interaction chromatography. Analytical Biochemistry 1999; 275(1): 122-124.
7. Diogo MM, Queiroz JA and Prazeres DMF. Hydrophobic interaction chromatography of homo-oligonucleotides on derivatized Sepharose CL-6B. Application of the solvophobic theory. Journal of Chromatography A 2002; 944(1-2): 119-128.
8. Diogo MM, Prazeres DMF, Pinto NG and Queiroz JA. Hydrophobic interaction chromatography of homo-oligonucleotides on derivatized sepharose CL-6B. Using and relating two different models for describing the effect of salt and temperature on retention. Journal of Chromatography A 2003; 1006(1-2): 137-148.
9. Diogo MM, Queiroz JA and Prazeres DMF. Chromatography of plasmid DNA. Journal of Chromatography A 2005; 1069(1): 3-22.
10. Esquibel-King MA, Dias-Cabral AC, Queiroz JA and Pinto NG. Study of hydrophobic interaction adsorption of bovine serum albumin under overloaded conditions using flow microcalorimetry. Journal of Chromatography A 1999; 865(1-2): 111-122.
11. Ferreira GN, Monteiro GA, Prazeres DMF and Cabral JM. Downstream processing of plasmid DNA for gene therapy and DNA vaccine applications. Trends in Biotechnology 2000; 18(9): 380-388.
12. Hoffman MM, Khrapov MA, Cox JC, Yao J, Tong L and Ellington AD. AANT: the amino acid-nucleotide interaction database. Nucleic Acids Research 2004; 32: D174-181.
13. Ikuta S, Chattopadhyaya R and Dickerson RE. Reverse-phase polystyrene column for purification and analysis of DNA oligomers. Analytical Chemistry 1984; 56(12): 2253-2256.
14. Kanoun S, Amourache L, Krishnan S and Vijayalakshmi MA. New support for the large-scale purification of proteins. Journal of Chromatography 1986; 376: 259-267.
15. Kejnovska I, Kypr J and Vorlickova M. Circular dichroism spectroscopy of conformers of (guanine + adenine) repeat strands of DNA. Chirality 2003; 15(7): 584-592.
16. Lemmens R, Olsson U, Nyhammar T and Stadler J. Supercoiled plasmid DNA: selective purification by thiophilic/aromatic adsorption. Journal of Chromatography B 2003; 784(2): 291-300.
17. Luscombe NM, Laskowski RA and Thornton JM. Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Research 2001; 29(13): 2860-2874.
18. Mandel-Gutfreund Y, Schueler O and Margalit H. Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes: in search of common principles. Journal of Molecular Biology 1995; 253(2): 370-382.
19. Nagatoishi S, Tanaka Y and Tsumoto K. Circular dichroism spectra demonstrate formation of the thrombin-binding DNA aptamer G-quadruplex under stabilizing-cation-deficient conditions. Biochemical and Biophysical Research Communications 2007; 352(3): 812-817.
20. Prazeres DMF, Schluep T and Cooney C. Preparative purification of supercoiled plasmid DNA using anion-exchange chromatography. Journal of Chromatography A 1998; 806(1): 31-45.
21. Prazeres DMF, Ferreira GN, Monteiro GA, Cooney CL and Cabral JM. Large-scale production of pharmaceutical-grade plasmid DNA for gene therapy: problems and bottlenecks. Trends in Biotechnology 1999; 17(4): 169-174.
22. Sousa F, Tomaz CT, Prazeres DMF and Queiroz JA. Separation of supercoiled and open circular plasmid DNA isoforms by chromatography with a histidine-agarose support. Analytical Biochemistry 2005; 343(1): 183-185.
23. Sousa F, Freitas S, Azzoni AR, Prazeres DMF and Queiroz J. Selective purification of supercoiled plasmid DNA from clarified cell lysates with a single histidine-agarose chromatography step. Biotechnology and Applied Biochemistry 2006; 45(Pt 3): 131-140.
24. Sousa F, Prazeres DMF and Queiroz JA. Dynamic binding capacity of plasmid DNA in histidine-agarose chromatography. Biomedical Chromatography 2007a; 21(9): 993-998.
25. Sousa F, Prazeres DMF and Queiroz JA. Circular dichroism investigation of the effect of plasmid DNA structure on retention in histidine chromatography. Archives of Biochemistry and Biophysics 2007b; 467: 154-162.
26. Sousa F, Prazeres DMF and Queiroz JA. Affinity chromatography approaches to overcome the challenges of purifying plasmid DNA. Trends in Biotechnology 2008a; 26(9): 518-525.
27. Sousa F, Prazeres DMF and Queiroz JA. Binding and elution strategy for improved performance of arginine affinity chromatography in supercoiled plasmid DNA purification. Biomedical Chromatography 2008b; 23: 160-165.
28. Stadler J, Lemmens R and Nyhammar T. Plasmid DNA purification. Journal of Gene Medicine 2004; 6(suppl. 1): S54-66.
29. Tan L, Lai WB, Lee CT, Kim DS and Choe WS. Differential interactions of plasmid DNA, RNA and endotoxin with immobilised and free metal ions. Journal of Chromatography A 2007; 1141(2): 226-234.
30. Tuntiwechapikul W, Taka T, Bethencourt M, Makonkawkeyoon L and Randall Lee T. The influence of pH on the G-quadruplex binding selectivity of perylene derivatives. Bioorganic and Medicinal Chemistry Letters 2006; 16(15): 4120-4126.
31. Urthaler J, Schlegl R, Podgornik A, Strancar A, Jungbauer A and Necina R. Application of monoliths for plasmid DNA purification development and transfer to production. Journal of Chromatography A 2005; 1065(1): 93-106.
32. Wu X, Haupt K and Vijayalakshmi MA. Separation of immunoglobulin G by high-performance pseudo-bioaffinity chromatography with immobilized histidine. I. Preliminary report on the influence of the silica support and the coupling mode. Journal of Chromatography 1992; 584(1): 35-41.