A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 877, Issue 27, 2009, Pages 3127-3136

  Nanni, Paolo ^a   Levander, Fredrik ^b   Roda, Giulia ^c   Caponi, Alessandra ^c   James, Peter ^b   Roda, Aldo ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b LUND UNIVERSITY   (Sweden)

^c UNIVERSITY OF BOLOGNA   (Italy)

Author keywords

Crohn's disease; Exoproteases; Label free liquid chromatography mass spectrometry; Protein profling; Proteomics

Indexed keywords

BIO-MARKER DISCOVERY; CHEMOMETRIC ANALYSIS; CROHN'S DISEASE; DATA SETS; DATABASE SEARCHES; EXOPROTEASES; INFLAMMATORY BOWEL DISEASE; LABEL FREE; LABEL-FREE LIQUID CHROMATOGRAPHY-MASS SPECTROMETRY; LOW MOLECULAR WEIGHT; MALDI-MS; METHODOLOGICAL APPROACH; MS/MS ANALYSIS; NANO-LC; NANO-LIQUID CHROMATOGRAPHY-MASS SPECTROMETRY; PEPTIDOMICS; PHYSIOLOGICAL PROCESS; PROTEOMICS; SERUM PROTEINS; SERUM SAMPLES; SOFTWARE ENVIRONMENTS; SYNTHETIC PEPTIDE; ULCERATIVE COLITIS;

AMINES; BIOMARKERS; BODY FLUIDS; CHROMATOGRAPHIC ANALYSIS; DATA STORAGE EQUIPMENT; DIAGNOSIS; LABELS; LIQUIDS; MASS SPECTROMETERS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; PEPTIDES; PHYSIOLOGICAL MODELS; SEARCH ENGINES; ULTRASONICS;

LIQUID CHROMATOGRAPHY;

APOLIPOPROTEIN A4; APOLIPOPROTEIN E; COMPLEMENT COMPONENT C3; COMPLEMENT COMPONENT C3F; COMPLEMENT COMPONENT C4A; EXOPEPTIDASE; FETUIN A; FIBRINOGEN; FIBRINOGEN ALPHA; FIBRINOPEPTIDE A; PLASMA PROTEIN; UNCLASSIFIED DRUG;

ADULT; AGED; ARTICLE; BLOOD ANALYSIS; COMPUTER PROGRAM; CONTROLLED STUDY; CROHN DISEASE; DIAGNOSTIC VALUE; ELECTROSPRAY MASS SPECTROMETRY; ENZYME ACTIVITY; FEMALE; HUMAN; LIQUID CHROMATOGRAPHY; MAJOR CLINICAL STUDY; MALE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; METABOLITE; MOLECULAR WEIGHT; NANOLIQUID CHROMATOGRAPHY; PEPTIDE ANALYSIS; PEPTIDOMICS; PRIORITY JOURNAL; ULCERATIVE COLITIS;

ADULT; BIOLOGICAL MARKERS; BLOOD PROTEINS; CHROMATOGRAPHY, LIQUID; CLUSTER ANALYSIS; CROHN DISEASE; DATABASES, PROTEIN; EXOPEPTIDASES; FEMALE; HUMANS; MALE; MASS SPECTROMETRY; MIDDLE AGED; NANOTECHNOLOGY; NEOPLASMS; PEPTIDES; PROTEINS; PROTEOMICS;

EID: 69749094420     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2009.08.003     Document Type: Article

References (33)

1. Iliuk A., Galan J., and Tao W.A. Anal. Bioanal. Chem. 393 (2009) 503
2. Bantscheff M., Schirle M., Sweetman G., Rick J., and Kuster B. Anal. Bioanal. Chem. 389 (2007) 1017
3. Liotta L.A., and Petricoin E.F. Clin. Chem. 54 (2008) 3
4. Nanni P., Parisi D., Roda G., Casale M., Belluzzi A., Roda E., Mayer L., and Roda A. Rapid Commun. Mass Spectrom. 21 (2007) 4142
5. Nanni P., Mezzanotte L., Roda G., Caponi A., Levander F., James P., and Roda A. J. Proteomics 72 (2009) 865
6. Simon W., Beaven S.W., and Abreu M.T. Curr. Opin. Gastroenterol. 20 (2004) 318
7. Papp M., Norman G.L., Altorjay I., and Lakatos P.L. World J. Gastroenterol. 13 (2007) 2028
8. Liotta L.A., and Petricoin E.F. J. Clin. Invest. 116 (2006) 26
9. Liotta L.A., Ferrari M., and Petricoin E. Nature 425 (2003) 905
10. Meuwis M.A., Fillet M., Geurts P., de Seny D., Lutteri L., Chapelle J.P., Bours V., Wehenkel L., Belaiche J., Malaise M., Louis E., and Merville M.P. Biochem. Pharmacol. 73 (2007) 1422
11. Dekker L.J., Bosman J., Burgers P.C., van Rijswijk A., Freije R., Luider T., and Bischoff R. J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 847 (2007) 65
12. Gao M., Zhang J., Deng C., Yang P., and Zhang X. J. Proteome Res. 5 (2006) 2853
13. Zolotarjova N., Martosella J., Nicol G., Bailey J., Boyes B.E., and Barrett W.C. Proteomics 13 (2005) 3304
14. Brand J., Haslberger T., Zolg W., Pestlin G., and Palme S. Proteomics 6 (2006) 3236
15. Liu T., Qian W.J., Mottaz H.M., Gritsenko M.A., Norbeck A.D., Moore R.J., Purvine S.O., Camp II D.G., and Smith R.D. Mol. Cell. Proteomics 5 (2006) 2167
16. Bellew M., Coram M., Fitzgibbon M., Igra M., Randolph T., Wang P., May D., Eng J., Fang R., Lin C., Chen J., Goodlett D., Whiteaker J., Paulovich A., and McIntosh M. Bioinformatics 22 2006 (1902). http://proteomics.fhcrc.org/ Free available at http://proteomics.fhcrc.org
17. Häkkinen J., Vincic G., Månsson O., Wårell K., and Levander F. J. Proteome Res. 8 (2009) 3037. http://www.proteios.org
18. Geier M.S., Tenikoff D., Yazbeck R., McCaughan G.W., and Abbott C.A. J. Cell Physiol. 204 (2005) 687
19. Andoh A., Tsujikawa T., Hata K., Araki Y., Kitoh K., Sasaki M., Yoshida T., and Fujiyama Y. Am. J. Gastroenterol. 100 (2005) 2042
20. Best W.R., Becktel J.M., Singleton J.W., and Kern Jr. F. Gastroenterology 70 (1976) 439
21. Villanueva J., Philip J., Chaparro C.A., Li Y., Toledo-Crow R., DeNoyer L., and Fleisher M. J Proteome Res. 4 (2005) 1060
22. Govorukhinaa N.I., de Vriesb M., Reijmersc H.T., Horvatovicha P., Ate G.J., van der Zeed A.G., and Bischoff R. J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 877 (2009) 1281
23. Zheng X., Baker H., and Hancock W.S. J. Chromatogr. A 1120 (2006) 173
24. Huang H.L., Stasyk T., Morandell S., Mogg M., Schreiber M., Feuerstein I., Huck C.W., Stecher G., Bonn G.K., and Huber L.A. Electrophoresis 26 (2005) 2843
25. Tirumalai R.S., Chan K.C., Prieto D.A., Issaq H.J., Conrads T.P., and Veenstra T.D. Mol. Cell. Proteomics 2 (2003) 1096
26. Villanueva J., Shaffer D.R., Philip J., Chaparro C.A., Erdjument-Bromage H., Olshen A.B., Fleisher M., Lilja H., Brogi E., Boyd J., Sanchez-Carbayo M., Holland E.C., Cordon-Cardo C., Scher H.I., and Tempst P. J. Clin. Invest. 116 (2006) 271
27. Villanueva J., Nazarian A., Lawlor K., Yi S.S., Robbins R.J., and Tempst P. Mol. Cell. Proteomics 7 (2008) 509
28. Forina M., Lanteri S., Armanino C., Oliveros M.C.C., and Casolino C. V-PARVUS (2004). Freely available at http://www.parvus.unige.it
29. Nesvizhskii A.I., and Aebersold R. Mol. Cell. Proteomics 4 (2005) 1419
30. Danese S., Papa A., Saibeni S., Repici A., Malesci A., and Vecchi M. Am. J. Gastroenterol. 102 (2007) 174
31. Vowinkel T., Mori M., Krieglstein C.F., Russell J., Saijo F., Bharwani S., Turnage R.H., Davidson W.S., Tso P., Granger D.N., and Kalogeris T.J. J. Clin. Invest. 114 (2004) 260
32. Broedl U.C., Schachinger V., Lingenhel A., Lehrke M., Stark R., Seibold F., Göke B., Kronenberg F., Parhofer K.G., and Konrad-Zerna A. Inflamm. Bowel Dis. 13 (2007) 391
33. Jofre-Monseny L., Loboda A., Wagner A.E., Huebbe P., Boesch-Saadatmandi C., Jozkowicz A., Minihane A.M., Dulak J., and Rimbach G. Biochem. Biophys. Res. Commun. 357 (2007) 319