-
1
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washbum, M. P., Wolters, D., and Yates, J. R., III (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242-247
-
(2001)
Nat. Biotechnol
, vol.19
, pp. 242-247
-
-
Washbum, M.P.1
Wolters, D.2
Yates III, J.R.3
-
2
-
-
33750728385
-
Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications
-
Qian, W. J., Jacobs, J. M., Liu, T., Camp, D. G., II, and Smith, R. D. (2006) Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications. Mol. Cell. Proteomics 5, 1727-1744
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1727-1744
-
-
Qian, W.J.1
Jacobs, J.M.2
Liu, T.3
Camp II, D.G.4
Smith, R.D.5
-
3
-
-
1042275615
-
(2DO4) Modification-specific proteomics: Characterization of post-translational modifications by mass spectrometry
-
Jensen, O. N. (2DO4) Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry. Curr, Opin. Chem. Biol. 8, 33-41
-
Curr, Opin. Chem. Biol
, vol.8
, pp. 33-41
-
-
Jensen, O.N.1
-
4
-
-
33845267469
-
The blood peptidome: A higher dimension of information content for cancer biomarker discovery
-
Petricoin, E. F., Belluco, C., Araujo, R. P., and Liotta, L. A. (2006) The blood peptidome: a higher dimension of information content for cancer biomarker discovery. Nat. Rev. Cancer 6, 961-967
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 961-967
-
-
Petricoin, E.F.1
Belluco, C.2
Araujo, R.P.3
Liotta, L.A.4
-
5
-
-
0003880161
-
-
4th Ed, Garland Science, New York
-
Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., and Walter, P. (2002) Molecular Biology of the Cell, 4th Ed., Garland Science, New York
-
(2002)
Molecular Biology of the Cell
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
6
-
-
0033604499
-
Active site-directed protein regulation
-
Kobe, B., and Kemp, B. E. (1999) Active site-directed protein regulation. Nature 402, 373-376
-
(1999)
Nature
, vol.402
, pp. 373-376
-
-
Kobe, B.1
Kemp, B.E.2
-
7
-
-
0036515416
-
Emerging molecular markers of cancer
-
Sidransky, O. (2002) Emerging molecular markers of cancer. Nat. Rev. Cancer 2, 210-219
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 210-219
-
-
Sidransky, O.1
-
8
-
-
0036051482
-
Chemical approaches for functionally probing the proteome
-
Greenbaum, D., Baruch, A., Hayrapetian, L, Darula, Z., Burlingame, A., Medzihradszky, K. F., and Bogyo, M. (2002) Chemical approaches for functionally probing the proteome. Mol. Cell. Proteomics 1, 60-68
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 60-68
-
-
Greenbaum, D.1
Baruch, A.2
Hayrapetian, L.3
Darula, Z.4
Burlingame, A.5
Medzihradszky, K.F.6
Bogyo, M.7
-
9
-
-
29444460784
-
Activity-based probes that target diverse cysteine protease families
-
Kato, D., Boatright, K. M., Berger, A. B., Nazif, T., Blum, G., Ryan, C., Chehade, K. A., Salvesen, G. S., and Bogyo, M. (2005) Activity-based probes that target diverse cysteine protease families. Nat. Chem. Biol. 1, 33-38
-
(2005)
Nat. Chem. Biol
, vol.1
, pp. 33-38
-
-
Kato, D.1
Boatright, K.M.2
Berger, A.B.3
Nazif, T.4
Blum, G.5
Ryan, C.6
Chehade, K.A.7
Salvesen, G.S.8
Bogyo, M.9
-
10
-
-
0036022519
-
Proteomic profiling of mechanistically distinct enzyme classes using a common chemotype
-
Adam, G. C., Sorensen, E. J., and Cravatt, B. F. (2002) Proteomic profiling of mechanistically distinct enzyme classes using a common chemotype. Nat. Biotechnol. 20, 805-809
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 805-809
-
-
Adam, G.C.1
Sorensen, E.J.2
Cravatt, B.F.3
-
11
-
-
24044520992
-
A streamlined platform for high-content functional proteomics of primary human specimens
-
Jessani, N., Niessen, S., Wei, B. Q., Nicolau, M., Humphrey, M., Ji, Y., Han, W., Noh, D. Y., Yates, J. R., III, Jeffrey, S. S., and Cravatt, B. F. (2005) A streamlined platform for high-content functional proteomics of primary human specimens. Nat. Methods 2, 691-697
-
(2005)
Nat. Methods
, vol.2
, pp. 691-697
-
-
Jessani, N.1
Niessen, S.2
Wei, B.Q.3
Nicolau, M.4
Humphrey, M.5
Ji, Y.6
Han, W.7
Noh, D.Y.8
Yates III, J.R.9
Jeffrey, S.S.10
Cravatt, B.F.11
-
12
-
-
29244487150
-
The process chain for peptidomic biomarker discovery
-
Schrader, M., and Selle, H. (2006) The process chain for peptidomic biomarker discovery. Dis. Markers 22, 27-37
-
(2006)
Dis. Markers
, vol.22
, pp. 27-37
-
-
Schrader, M.1
Selle, H.2
-
13
-
-
33947272665
-
Oncopeptidomics - a commentary on opportunities and limitations
-
Tammen, H., Zucht, H. D., and Budde, P. (2007) Oncopeptidomics - a commentary on opportunities and limitations. Cancer Lett. 249, 80-86
-
(2007)
Cancer Lett
, vol.249
, pp. 80-86
-
-
Tammen, H.1
Zucht, H.D.2
Budde, P.3
-
14
-
-
34249907591
-
Oncopeptidomics: A useful approach for cancer diagnosis?
-
Diamandis, E. P. (2007) Oncopeptidomics: a useful approach for cancer diagnosis? Clin. Chem. 53, 1004-1006
-
(2007)
Clin. Chem
, vol.53
, pp. 1004-1006
-
-
Diamandis, E.P.1
-
15
-
-
12144285600
-
Proteases, extracellular matrix, and cancer: A workshop of the path B study section
-
DeClerck, Y. A., Mercurio, A. M., Stack, M. S., Chapman, H. A., Zutter, M. M., Muschel, R. J., Raz, A., Matrisian, L. M., Sloane, B. F., Noel, A., Hendrix, M. J., Coussens, L., and Padarathsingh, M. (2004) Proteases, extracellular matrix, and cancer: a workshop of the path B study section. Am. J. Pathol. 164, 1131-1139
-
(2004)
Am. J. Pathol
, vol.164
, pp. 1131-1139
-
-
DeClerck, Y.A.1
Mercurio, A.M.2
Stack, M.S.3
Chapman, H.A.4
Zutter, M.M.5
Muschel, R.J.6
Raz, A.7
Matrisian, L.M.8
Sloane, B.F.9
Noel, A.10
Hendrix, M.J.11
Coussens, L.12
Padarathsingh, M.13
-
16
-
-
0037803570
-
Human and mouse proteases: A comparative genomic approach
-
Puente, X. S., Sanchez, L. M., Overall, C. M., and Lopez-Otin, C. (2003) Human and mouse proteases: a comparative genomic approach. Nat. Rev. Genet 4, 544-558
-
(2003)
Nat. Rev. Genet
, vol.4
, pp. 544-558
-
-
Puente, X.S.1
Sanchez, L.M.2
Overall, C.M.3
Lopez-Otin, C.4
-
17
-
-
31044436630
-
Differential exoprotease activities confer tumor-specific serum peptidome patterns
-
Villanueva, J., Shaffer, D. R., Philip, J., Chaparro, C. A., Erdjument-Bromage, H., Olshen, A. B., Fleisher, M., Lilja, H., Brogi, E., Boyd, J., Sanchez-Carbayo, M., Holland, E. C., Cordon-Cardo, C., Scher, H. I., and Tempst, P. (2006) Differential exoprotease activities confer tumor-specific serum peptidome patterns. J. Clin. Investig. 116, 271-284
-
(2006)
J. Clin. Investig
, vol.116
, pp. 271-284
-
-
Villanueva, J.1
Shaffer, D.R.2
Philip, J.3
Chaparro, C.A.4
Erdjument-Bromage, H.5
Olshen, A.B.6
Fleisher, M.7
Lilja, H.8
Brogi, E.9
Boyd, J.10
Sanchez-Carbayo, M.11
Holland, E.C.12
Cordon-Cardo, C.13
Scher, H.I.14
Tempst, P.15
-
18
-
-
0020961939
-
Activation of blood coagulation in cancer: Trousseau's syndrome revisited
-
Rickles, F. R., and Edwards, R. L. (1983) Activation of blood coagulation in cancer: Trousseau's syndrome revisited. Blood 62, 14-31
-
(1983)
Blood
, vol.62
, pp. 14-31
-
-
Rickles, F.R.1
Edwards, R.L.2
-
19
-
-
0027006423
-
Coagulation abnormalities in malignancy: A review
-
Bick, R. L. (1992) Coagulation abnormalities in malignancy: a review. Semin. Thromb. Hemost. 18, 353-372
-
(1992)
Semin. Thromb. Hemost
, vol.18
, pp. 353-372
-
-
Bick, R.L.1
-
21
-
-
23944456398
-
Correcting common errors in identifying cancer-specific serum peptide signatures
-
Villanueva, J., Philip, J., Chaparro, C. A., Li, Y., Toledo-Crow, R., DeNoyer, L., Fleisher, M., Robbins, R. J., and Tempst, P. (2005) Correcting common errors in identifying cancer-specific serum peptide signatures. J. Proteome Res. 4, 1060-1072
-
(2005)
J. Proteome Res
, vol.4
, pp. 1060-1072
-
-
Villanueva, J.1
Philip, J.2
Chaparro, C.A.3
Li, Y.4
Toledo-Crow, R.5
DeNoyer, L.6
Fleisher, M.7
Robbins, R.J.8
Tempst, P.9
-
22
-
-
33750621983
-
Serum peptidome patterns that distinguish metastatic thyroid carcinoma from cancer-free controls are unbiased by gender and age
-
Villanueva, J., Martorella, A. J., Lawlor, K., Philip, J., Fleisher, M., Robbins, R. J., and Tempst, P. (2006) Serum peptidome patterns that distinguish metastatic thyroid carcinoma from cancer-free controls are unbiased by gender and age. Mol. Cell. Proteomics 5, 1840-1852
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1840-1852
-
-
Villanueva, J.1
Martorella, A.J.2
Lawlor, K.3
Philip, J.4
Fleisher, M.5
Robbins, R.J.6
Tempst, P.7
-
23
-
-
0027973437
-
Biodiversity of apidaecin-type peptide antibiotics. Prospects of manipulating the antibacterial spectrum and combating acquired resistance
-
Casteels, P., Romagnolo, J., Castle, M., Casteels-Josson, K., Erdjument-Bromage, H., and Tempst, P. (1994) Biodiversity of apidaecin-type peptide antibiotics. Prospects of manipulating the antibacterial spectrum and combating acquired resistance. J. Biol. Chem. 269, 26107-26115
-
(1994)
J. Biol. Chem
, vol.269
, pp. 26107-26115
-
-
Casteels, P.1
Romagnolo, J.2
Castle, M.3
Casteels-Josson, K.4
Erdjument-Bromage, H.5
Tempst, P.6
-
24
-
-
0032748297
-
Lethal effects of apidaecin on Escherichia coli involve sequential molecular interactions with diverse targets
-
Castle, M., Nazarian, A., Yi, S. S., and Tempst, P. (1999) Lethal effects of apidaecin on Escherichia coli involve sequential molecular interactions with diverse targets. J. Biol. Chem. 274, 32555-32564
-
(1999)
J. Biol. Chem
, vol.274
, pp. 32555-32564
-
-
Castle, M.1
Nazarian, A.2
Yi, S.S.3
Tempst, P.4
-
25
-
-
33846922189
-
Automated serum peptide profiling
-
Villanueva, J., Lawlor, K., Toledo-Crow, R., and Tempst, P. (2006) Automated serum peptide profiling. Nat. Protoc. 1, 880-891
-
(2006)
Nat. Protoc
, vol.1
, pp. 880-891
-
-
Villanueva, J.1
Lawlor, K.2
Toledo-Crow, R.3
Tempst, P.4
-
26
-
-
34347266569
-
Data analysis of assorted serum peptidome profiles
-
Villanueva, J., Philip, J., DeNoyer, L., and Tempst, P. (2007) Data analysis of assorted serum peptidome profiles. Nat. Protoc. 2, 588-602
-
(2007)
Nat. Protoc
, vol.2
, pp. 588-602
-
-
Villanueva, J.1
Philip, J.2
DeNoyer, L.3
Tempst, P.4
-
27
-
-
1542617944
-
Serum peprtide profiling by magnetic particle-assisted, automated sample processing and MALDI-TOF mass spectrometry
-
Villanueva, J., Philip, J., Entenberg, D., Chaparro, C. A., Tanwar, M. K., Holland, E. C., and Tempst, P. (2004) Serum peprtide profiling by magnetic particle-assisted, automated sample processing and MALDI-TOF mass spectrometry. Anal. Chem. 76, 1560-1570
-
(2004)
Anal. Chem
, vol.76
, pp. 1560-1570
-
-
Villanueva, J.1
Philip, J.2
Entenberg, D.3
Chaparro, C.A.4
Tanwar, M.K.5
Holland, E.C.6
Tempst, P.7
-
28
-
-
33645721632
-
Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
-
Anderson, L., and Hunter, C. L. (2006) Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteomics 5, 573-588
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 573-588
-
-
Anderson, L.1
Hunter, C.L.2
-
29
-
-
4444301306
-
Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-MS/MS using protein cleavage and isotope dilution mass spectrometry
-
Bamidge, D. R., Goodmanson, M. K., Klee, G. G., and Muddiman, D. C. (2004) Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-MS/MS using protein cleavage and isotope dilution mass spectrometry. J. Proteome Res. 3, 644-652
-
(2004)
J. Proteome Res
, vol.3
, pp. 644-652
-
-
Bamidge, D.R.1
Goodmanson, M.K.2
Klee, G.G.3
Muddiman, D.C.4
-
30
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., and Gygi, S. P. (2003) Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Aced. Sci. U. S. A. 100, 6940-6945
-
(2003)
Proc. Natl. Aced. Sci. U. S. A
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
31
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
32
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H., and Aebersold, R. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994-999
-
(1999)
Nat. Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
33
-
-
20844448187
-
Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery
-
Koomen, J. M., Li, D., Xiao, L. C., Liu, T. C., Coombes, K. R., Abbruzzese, J., and Kobayashi, R. (2005) Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery. J. Proteome Res. 4, 972-981
-
(2005)
J. Proteome Res
, vol.4
, pp. 972-981
-
-
Koomen, J.M.1
Li, D.2
Xiao, L.C.3
Liu, T.C.4
Coombes, K.R.5
Abbruzzese, J.6
Kobayashi, R.7
-
34
-
-
0141885138
-
Extracellular proteolysis and cancer: Meeting summary and future directions
-
Matrisian, L. M., Sledge, G. W., Jr., and Mohla, S. (2003) Extracellular proteolysis and cancer: meeting summary and future directions. Cancer Res. 63, 6105-6109
-
(2003)
Cancer Res
, vol.63
, pp. 6105-6109
-
-
Matrisian, L.M.1
Sledge Jr., G.W.2
Mohla, S.3
-
35
-
-
2942535913
-
Proteomics and cancer running before we can walk?
-
Check, E. (2004) Proteomics and cancer running before we can walk? Nature 429, 496-497
-
(2004)
Nature
, vol.429
, pp. 496-497
-
-
Check, E.1
-
36
-
-
2542640080
-
Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: Opportunities and potential limitations
-
Diamandis, E. P. (2004) Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations. Mol. Cell. Proteomics 3, 367-378
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 367-378
-
-
Diamandis, E.P.1
-
37
-
-
0023493493
-
Hemostatic abnormalities in untreated cancer: Incidence and correlation with thrombotic and hemorrhagic complications
-
Nand, S., Fisher, S. G., Salgia, R., and Fisher, R. I. (1987) Hemostatic abnormalities in untreated cancer: incidence and correlation with thrombotic and hemorrhagic complications. J. Clin. Oncol. 5, 1998-2003
-
(1987)
J. Clin. Oncol
, vol.5
, pp. 1998-2003
-
-
Nand, S.1
Fisher, S.G.2
Salgia, R.3
Fisher, R.I.4
-
38
-
-
0026497167
-
Hemostatic alterations in cancer patients
-
Rickles, F. R., Levine, M., and Edwards, R. L. (1992) Hemostatic alterations in cancer patients. Cancer Metastasis Rev. 11, 237-248
-
(1992)
Cancer Metastasis Rev
, vol.11
, pp. 237-248
-
-
Rickles, F.R.1
Levine, M.2
Edwards, R.L.3
-
39
-
-
0035258481
-
Hemostatic changes in patients with malignancy
-
Goldsmith, G. H. (2001) Hemostatic changes in patients with malignancy. Int. J. Hematol. 73, 151-156
-
(2001)
Int. J. Hematol
, vol.73
, pp. 151-156
-
-
Goldsmith, G.H.1
-
42
-
-
0003678651
-
-
3rd Ed, W. B. Saunders Co, Philadelphia
-
Stamatoyannopoulos, G., Majerus, P. W., Perlmutter, R. M., and Varmus, H. (2001) The Molecular Basis of Blood Diseases, 3rd Ed., W. B. Saunders Co., Philadelphia
-
(2001)
The Molecular Basis of Blood Diseases
-
-
Stamatoyannopoulos, G.1
Majerus, P.W.2
Perlmutter, R.M.3
Varmus, H.4
-
43
-
-
4444287314
-
Thrombin-activatable fibrinolysis inhibitor
-
Marx, P. F. (2004) Thrombin-activatable fibrinolysis inhibitor. Curr. Med. Chem. 11, 2335-2348
-
(2004)
Curr. Med. Chem
, vol.11
, pp. 2335-2348
-
-
Marx, P.F.1
|