Determination of the six rate constants of a three-state enzymatic network and a noninvasive test of detailed balance

Journal of Chemical Physics

Volumn 131, Issue 8, 2009, Pages

  Berthoumieux, H ^a   Antoine, C ^a   Lemarchand, A ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL EXPRESSIONS; BIOLOGICAL MEDIUM; DETAILED BALANCE; ENZYMATIC CATALYSIS; ENZYMATIC CONCENTRATIONS; EXPERIMENTAL INVESTIGATIONS; FLUORESCENT PROBES; IN-SITU OBSERVATIONS; IN-SITU TEST; MICHAELIS CONSTANTS; MICHAELIS-MENTEN; OSCILLATION AMPLITUDE; REFERENCE MODELS; TEMPERATURE MODULATION;

ENZYME KINETICS; EXPLOSIVES;

RATE CONSTANTS;

ENZYME;

ARTICLE; BIOCATALYSIS; CHEMICAL MODEL; CHEMISTRY; KINETICS; METABOLISM; TEMPERATURE;

BIOCATALYSIS; ENZYMES; KINETICS; MODELS, CHEMICAL; TEMPERATURE;

EID: 69549108021     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3206736     Document Type: Article

References (36)

1. J. Stelling, S. Klamt, K. Bettenbrock, S. Schuster, and E. D. Gilles, Nature (London) 0028-0836 420, 190 (2002). 10.1038/nature01166 (Pubitemid 35340124)
2. R. Steuer, T. Gross, J. Selbig, and B. Blasius, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 103, 11868 (2006). 10.1073/pnas.0600013103 (Pubitemid 44215778)
3. J. Ross, Acc. Chem. Res. 0001-4842 36, 839 (2003). 10.1021/ar020285f
4. N. C. Shaner, P. A. Steinbach, and R. Y. Tsien, Nat. Methods 1548-7091 2, 905 (2005). 10.1038/nmeth819 (Pubitemid 43108726)
5. D. J. Stephens and V. J. Allan, Science 0036-8075 300, 82 (2003). 10.1126/science.1082160 (Pubitemid 36423031)
6. H. H. Gerdes and C. Kaether, FEBS Lett. 0014-5793 389, 44 (1996). 10.1016/0014-5793(96)00586-8 (Pubitemid 26227423)
7. N. D. Lawson and B. M. Weinstein, Dev. Biol. 0012-1606 248, 307 (2002). 10.1006/dbio.2002.0711 (Pubitemid 35002091)
8. N. Rosenfeld, J. W. Young, U. Alon, P. S. Swain, and M. B. Elowitz, Science 0036-8075 307, 1962 (2005). 10.1126/science.1106914 (Pubitemid 40404705)
9. L. Cai, L. C. K. Dalal, and M. B. Elowitz, Nature (London) 0028-0836 455, 485 (2008). 10.1038/nature07292
10. J. T. Mettetal, D. Muzzey, D. Gomez-Uribe, and A. Van Oudenaarden, Science 0036-8075 319, 482 (2008). 10.1126/science.1151582 (Pubitemid 351160584)
11. O. Lipan, Science 0036-8075 319, 417 (2008). 10.1126/science.1154208 (Pubitemid 351160565)
12. J. Gunawardena, Proc. IEEE 0018-9219 96, 1386 (2008). 10.1109/JPROC.2008.925413
13. X. S. Xie, J. Yu, and W. Y. Yang, Science 0036-8075 312, 228 (2006). 10.1126/science.1127566
14. E. R. Nichols and D. B. Craig, Protein J. 1572-3887 27, 376 (2008). 10.1007/s10930-008-9147-y 1572-3887
15. M. Eigen and L. DeMayer, in Investigation of Rates and Mechanism of Reactions, Part II, Techniques of Organic Chemistry, Vol. 8 (Wiley Interscience, New York, 1963).
16. D. Braun and A. Libchaber, Appl. Phys. Lett. 0003-6951 83, 5554 (2003). 10.1063/1.1629782
17. A. G. Hadd, D. E. Raymond, J. W. Halliwell, S. C. Jacobson, and J. M. Ramsey, Anal. Chem. 0003-2700 69, 3407 (1997). 10.1021/ac970192p
18. G. H. Seong, J. Heo, and R. M. Crooks, Anal. Chem. 0003-2700 75, 3161 (2003). 10.1021/ac034155b (Pubitemid 36830447)
19. B. P. English, W. Min, A. M. Van Oijen, K. T. Lee, G. Luo, H. Sun, B. J. Cherayil, S. C. Kou, and X. S. Xie, Nat. Chem. Biol. 1552-4450 2, 87 (2006). 10.1038/nchembio759
20. U. Haupts, S. Maiti, P. Schwille, and W. W. Webb, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 95, 13573 (1998). 10.1073/pnas.95.23.13573 (Pubitemid 28523013)
21. R. D. Phair and T. Misteli, Nat. Rev. Mol. Cell Biol. 1471-0072 2, 898 (2001). 10.1038/35103000 (Pubitemid 33674089)
22. M. Wagner and J. Timmer, Biophys. J. 0006-3495 79, 2918 (2000). 10.1016/S0006-3495(00)76529-5
23. J. B. Witkoskie and J. Cao, J. Phys. Chem. B 1089-5647 110, 19009 (2006). 10.1021/jp061471w (Pubitemid 44547289)
24. H. Qian and E. L. Elson, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 101, 2828 (2004). 10.1073/pnas.0305962101 (Pubitemid 38327696)
25. B. Robertson and R. D. Astumian, J. Chem. Phys. 0021-9606 94, 7414 (1991). 10.1063/1.460173
26. R. D. Astumian, B. Robertson, R. S. Li, and J. Ross, J. Chem. Phys. 0021-9606 96, 6536 (1992). 10.1063/1.462592
27. R. D. Astumian and B. Robertson, J. Am. Chem. Soc. 0002-7863 115, 11063 (1993). 10.1021/ja00077a001
28. M. Samoilov, A. Arkin, and J. Ross, J. Phys. Chem. A 1089-5639 106, 10205 (2002). 10.1021/jp025846z (Pubitemid 35313800)
29. H. Berthoumieux, L. Jullien, and A. Lemarchand, Phys. Rev. E 1063-651X 76, 056112 (2007). 10.1103/PhysRevE.76.056112 (Pubitemid 350127484)
30. H. Berthoumieux, C. Antoine, L. Jullien, and A. Lemarchand, Phys. Rev. E 1063-651X 79, 021906 (2009). 10.1103/PhysRevE.79.021906
31. E. Z. Eisenmesser, D. A. Bosco, M. Akke, and D. Kern, Science 0036-8075 295, 1520 (2002). 10.1126/science.1066176 (Pubitemid 34174006)
32. M. Akke, Curr. Opin. Struct. Biol. 0959-440X 12, 642 (2002). 10.1016/S0959-440X(02)00369-X (Pubitemid 35449073)
33. E. Betzig, G. H. Patterson, R. Sougrat, O. Wolf Lindwasser, S. Olenych, J. S. Bonifacion, M. W. Davidson, J. Lippincott-Schwartz, and H. F. Hess, Science 0036-8075 313, 1642 (2006). 10.1126/science.1127344 (Pubitemid 44414039)
34. U. Seifert, Europhys. Lett. 0295-5075 70, 36 (2005). 10.1209/epl/i2005- 10003-9
35. W. Min, L. Jiang, J. Yu, S. C. Kou, H. Qian, and X. S. Xie, Nano Lett. 1530-6984 5, 2373 (2005). 10.1021/nl0521773 (Pubitemid 43088880)
36. T. Barilero, T. Le Saux, C. Gosse, and L. Jullien, "Fluorescent thermometers for dual-emission-wavelength measurements: molecular engineering and application to thermal imaging in a microsystem," Anal. Chem. 0003-2700 (to be published).