Gracilibacillus saliphilus sp. nov., a moderately halophilic bacterium isolated from a salt lake

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 7, 2009, Pages 1620-1624

  Tang, Shu Kun ^a,d   Wang, Yun ^b   Lou, Kai ^b   Mao, Pei Hong ^c   Jin, Xiang ^c   Jiang, Cheng Lin ^a,d   Xu, Li Hua ^a,d   Li, Wen Jun ^a,d  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^b INSTITUTE OF MICROBIOLOGY   (China)

^c XINJIANG UNIVERSITY   (China)

^d YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; CYTOSINE; DNA; GUANOSINE; PEPTIDOGLYCAN; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RIBOSOME RNA; RNA 16S; SODIUM CHLORIDE; BACTERIAL DNA; FATTY ACID; FRESH WATER;

ARTICLE; BACTERIAL CELL; BACTERIAL ENDOSPORE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHINA; COMPARATIVE STUDY; CULTURE OPTIMIZATION; DNA CONTENT; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GRACILIBACILLUS BORACIITOLERANS; GRACILIBACILLUS DIPSOSAURI; GRACILIBACILLUS HALOTERANS; GRACILIBACILLUS ORIENTALIS; GRACILIBACILLUS SALIPHILUS; GRAM POSITIVE BACTERIUM; HALOPHILIC BACTERIUM; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; SALT LAKE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; BACILLACEAE; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); GRACILIBACILLUS; GRACILIBACILLUS DIPSOSAURI; GRACILIBACILLUS HALOTOLERANS; GRACILIBACILLUS ORIENTALIS; POSIBACTERIA;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; FATTY ACIDS; FRESH WATER; GENES, RRNA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPECIES SPECIFICITY;

EID: 69449092530     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.006569-0     Document Type: Article

References (31)

1. Ahmed, I., Yokota, A. & Fujiwara, T. (2007). Gracilibacillus boraciitolerans sp. nov., a highly boron-tolerant and moderately halotolerant bacterium isolated from soil. Int J Syst Evol Microbiol 57, 796-802.
2. Carrasco, I. J., Márquez, M. C., Yanfen, X., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006). Gracilibacillus orientalis sp. nov., a novel moderately halophilic bacterium isolated from a salt lake in Inner Mongolia, China. Int J Syst Evol Microbiol 56, 599-604.
3. Cerny, G. (1978). Studies on the aminopeptidase test for the distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 113-122.
4. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
5. Cui, H.-L., Tohty, D., Feng, J., Zhou, P.-J. & Liu, S.-J. (2006a). Natronorubrum aibiense sp. nov., an extremely halophilic archaeon isolated from Aibi salt lake in Xin-Jiang, China, and emended description of the genus Natronorubrum. Int J Syst Evol Microbiol 56, 1515-1517.
6. Cui, H.-L., Tohty, D., Zhou, P.-J. & Liu, S.-J. (2006b). Haloterrigena longa sp. nov. and Haloterrigena limicola sp. nov., extremely halophilic archaea isolated from a salt lake. Int J Syst Evol Microbiol 56, 1837-1840.
7. DeLong, E. F. (1992). Archaea in coastal marine environments. Proc Natl Acad Sci U S A 89, 5685-5689.
8. Deutch, C. E. (1994). Characterization of a novel salt-tolerant Bacillus sp. from the nasal cavities of desert iguanas. FEMS Microbiol Lett 121, 55-60.
9. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
10. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17, 368-376.
11. Felsenstein, J. (1985). Conference limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
12. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
13. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
14. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5, 2359-2367.
15. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
16. Lawson, P. A., Deutch, C. E. & Collins, M. D. (1996). Phylogenetic characterization of a novel salt-tolerant Bacillus species: Description of Bacillus dipsosauri sp. nov. J Appl Bacteriol 81, 109-112.
17. Leifson, E. (1960). Atlas of Bacterial Flagellation. London: Academic Press.
18. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-Q., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
19. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
20. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
21. Qian, Y.-B., Wu, Z.-N., Yang, Q., Zhang, L.-Y. & Wang, X.-Y. (2007). Ground-surface conditions of sand-dust event occurrences in the southern Junggar Basin of Xinjiang, China. J Arid Environ 70, 49-62.
22. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
23. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
24. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
25. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Bacteriology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Philips. Washington, DC: American Society for Microbiology.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
27. Wainø, M., Tindall, B. J., Schumann, P. & Ingvorsen, K. (1999). Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49, 821-831.
28. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
29. Xin, H., Itoh, T., Zhou, P., Suzuki, K., Kamekura, M. & Nakase, T. (2000). Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int J Syst Evol Microbiol 50, 1297-1303.
30. Xu, P., Li, W.-J., Tang, S.-K., Zhang, Y.-Q., Chen, G.-Z., Chen, H.-H., Xu, L.-H. & Jiang, C.-L. (2005). Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family' Oxalobacteraceae' isolated from China. Int J Syst Evol Microbiol 55, 1149-1153.
31. Yang, Y., Cui, H.-L., Zhou, P.-J. & Liu, S.-J. (2007). Haloarcula amylolytica sp. nov., an extremely halophilic archaeon isolated from Aibi salt lake in Xin-Jiang, China. Int J Syst Evol Microbiol 57, 103-106.