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Volumn 83, Issue 17, 2009, Pages 9018-9021

Is single-strand conformation polymorphism analysis of the full 5′ untranslated region an adequate approach to study hepatitis C virus quasispecies distribution?

Author keywords

[No Author keywords available]

Indexed keywords

SINGLE STRANDED DNA; VIRUS DNA; VIRUS PROTEIN; VIRUS RNA;

EID: 69249231014     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.00971-09     Document Type: Article
Times cited : (5)

References (33)
  • 1
    • 4744346566 scopus 로고    scopus 로고
    • Genetic screening methods for the detection of mutations responsible for multiple endocrine neoplasia type 1
    • Balogh, K., A. Patocs, J. Majnik, K. Racz, and L. Hunyady. 2004. Genetic screening methods for the detection of mutations responsible for multiple endocrine neoplasia type 1. Mol. Genet. Metab. 83:74-81.
    • (2004) Mol. Genet. Metab. , vol.83 , pp. 74-81
    • Balogh, K.1    Patocs, A.2    Majnik, J.3    Racz, K.4    Hunyady, L.5
  • 3
    • 33750995285 scopus 로고    scopus 로고
    • Molecular approaches in the diagnosis of primary immunodeficiency diseases
    • Costabile, M., A. Quach, and A. Ferrante. 2006. Molecular approaches in the diagnosis of primary immunodeficiency diseases. Hum. Mutat. 27:1163-1173.
    • (2006) Hum. Mutat. , vol.27 , pp. 1163-1173
    • Costabile, M.1    Quach, A.2    Ferrante, A.3
  • 4
    • 33745763869 scopus 로고    scopus 로고
    • Clinical and Therapeutic Implications of Hepatitis C Virus Compartmentalization
    • DOI 10.1053/j.gastro.2006.04.016, PII S001650850600758X
    • Di Liberto, G., A. M. Roque-Afonso, R. Kara, D. Ducoulombier, G. Fallot, D. Samuel, and C. Feray. 2006. Clinical and therapeutic implications of hepatitis C virus compartmentalization. Gastroenterology 131:76-84. (Pubitemid 44015750)
    • (2006) Gastroenterology , vol.131 , Issue.1 , pp. 76-84
    • Di Liberto, G.1    Roque-Afonso, A.2    Kara, R.3    Ducoulombier, D.4    Fallot, G.5    Samuel, D.6    Feray, C.7
  • 6
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • Domingo, E., and J. J. Holland. 1997. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51:151-178.
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 7
    • 33845623845 scopus 로고    scopus 로고
    • Structural and mechanistic insights into hepatitis C viral translation initiation
    • Fraser, C. S., and J. A. Doudna. 2007. Structural and mechanistic insights into hepatitis C viral translation initiation. Nat. Rev. Microbiol. 5:29-38.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 29-38
    • Fraser, C.S.1    Doudna, J.A.2
  • 8
    • 0035935661 scopus 로고    scopus 로고
    • Applications of single-strand conformation polymorphism (SSCP) to taxonomy, diagnosis, population genetics and molecular evolution of parasitic nematodes
    • Gasser, R. B., and N. B. Chilton. 2001. Applications of single-strand conformation polymorphism (SSCP) to taxonomy, diagnosis, population genetics and molecular evolution of parasitic nematodes. Vet. Parasitol. 101:201-213.
    • (2001) Vet. Parasitol. , vol.101 , pp. 201-213
    • Gasser, R.B.1    Chilton, N.B.2
  • 9
    • 0027487271 scopus 로고
    • Optimization of the single-strand conformation polymorphism (SSCP) technique for detection of point mutations
    • Glavac, D., and M. Dean. 1993. Optimization of the single-strand conformation polymorphism (SSCP) technique for detection of point mutations. Hum. Mutat. 2:404-414.
    • (1993) Hum. Mutat. , vol.2 , pp. 404-414
    • Glavac, D.1    Dean, M.2
  • 10
    • 44049116183 scopus 로고
    • PCR-SSCP: A method for detection of mutations
    • Hayashi, K. 1992. PCR-SSCP: a method for detection of mutations. Genet. Anal. Technol. Appl. 9:73-79.
    • (1992) Genet. Anal. Technol. Appl. , vol.9 , pp. 73-79
    • Hayashi, K.1
  • 11
    • 0026207465 scopus 로고
    • PCR-SSCP: A simple and sensitive method for detection of mutations in the genomic DNA
    • Hayashi, K. 1991. PCR-SSCP: a simple and sensitive method for detection of mutations in the genomic DNA. PCR Methods Appl. 1:34-38.
    • (1991) PCR Methods Appl. , vol.1 , pp. 34-38
    • Hayashi, K.1
  • 12
    • 0027434131 scopus 로고
    • How sensitive is PCR-SSCP?
    • Hayashi, K., and D. W. Yandell. 1993. How sensitive is PCR-SSCP? Hum. Mutat. 2:338-346.
    • (1993) Hum. Mutat. , vol.2 , pp. 338-346
    • Hayashi, K.1    Yandell, D.W.2
  • 13
    • 0345279870 scopus 로고    scopus 로고
    • Use of DNA toolbox for the characterization of mutation scanning methods. II: Evaluation of single-strand conformation polymorphism analysis
    • Highsmith, W. E., Jr., A. J. Nataraj, Q. Jin, J. M. O'Connor, S. H. El-Nabi, N. Kusukawa, and M. M. Garner. 1999. Use of DNA toolbox for the characterization of mutation scanning methods. II: evaluation of single-strand conformation polymorphism analysis. Electrophoresis 20:1195-1203.
    • (1999) Electrophoresis , vol.20 , pp. 1195-1203
    • Highsmith Jr., W.E.1    Nataraj, A.J.2    Jin, Q.3    O'Connor, J.M.4    El-Nabi, S.H.5    Kusukawa, N.6    Garner, M.M.7
  • 15
    • 0031044749 scopus 로고    scopus 로고
    • Singlestrand conformation polymorphism analysis with high throughput modifications, and its use in mutation detection in familial hypercholesterolemia. International Federation of Clinical Chemistry Scientific Division: Committee on Molecular Biology Techniques
    • Humphries, S. E., V. Gudnason, R. Whittall, and I. N. Day. 1997. Singlestrand conformation polymorphism analysis with high throughput modifications, and its use in mutation detection in familial hypercholesterolemia. International Federation of Clinical Chemistry Scientific Division: Committee on Molecular Biology Techniques. Clin. Chem. 43:427-435.
    • (1997) Clin. Chem. , vol.43 , pp. 427-435
    • Humphries, S.E.1    Gudnason, V.2    Whittall, R.3    Day, I.N.4
  • 16
    • 0033031389 scopus 로고    scopus 로고
    • Differences between hepatitis C virus 5′ untranslated region quasispecies in serum and liver
    • Jang, S. J., L. F. Wang, M. Radkowski, J. Rakela, and T. Laskus. 1999. Differences between hepatitis C virus 5′ untranslated region quasispecies in serum and liver. J. Gen. Virol. 80:711-716.
    • (1999) J. Gen. Virol. , vol.80 , pp. 711-716
    • Jang, S.J.1    Wang, L.F.2    Radkowski, M.3    Rakela, J.4    Laskus, T.5
  • 18
    • 0031758094 scopus 로고    scopus 로고
    • Search for hepatitis C virus extrahepatic replication sites in patients with acquired immunodeficiency syndrome: Specific detection of negative- Strand viral RNA in various tissues
    • DOI 10.1002/hep.510280531
    • Laskus, T., M. Radkowski, L. F. Wang, H. Vargas, and J. Rakela. 1998. Search for hepatitis C virus extrahepatic replication sites in patients with acquired immunodeficiency syndrome: specific detection of negative-strand viral RNA in various tissues. Hepatology 28:1398-1401. (Pubitemid 28493852)
    • (1998) Hepatology , vol.28 , Issue.5 , pp. 1398-1401
    • Laskus, T.1    Radkowski, M.2    Wang, L.-F.U.3    Vargas, H.4    Rakela, J.5
  • 19
    • 0037083253 scopus 로고    scopus 로고
    • The origin of hepatitis C virus reinfecting transplanted livers: Serum-derived versus peripheral blood mononuclear cell-derived virus
    • Laskus, T., M. Radkowski, J. Wilkinson, H. Vargas, and J. Rakela. 2002. The origin of hepatitis C virus reinfecting transplanted livers: serum-derived versus peripheral blood mononuclear cell-derived virus. J. Infect. Dis. 185:417-421.
    • (2002) J. Infect. Dis. , vol.185 , pp. 417-421
    • Laskus, T.1    Radkowski, M.2    Wilkinson, J.3    Vargas, H.4    Rakela, J.5
  • 20
    • 0035811625 scopus 로고    scopus 로고
    • Hepatitis C virus infection
    • Lauer, G. M., and B. D. Walker. 2001. Hepatitis C virus infection. N. Engl. J. Med. 345:41-52.
    • (2001) N. Engl. J. Med. , vol.345 , pp. 41-52
    • Lauer, G.M.1    Walker, B.D.2
  • 21
    • 0032772838 scopus 로고    scopus 로고
    • Two buffer PAGE system-based SSCP/HD analysis: A general protocol for rapid and sensitive mutation screening in cystic fibrosis and any other human genetic disease
    • Liechti-Gallati, S., V. Schneider, D. Neeser, and R. Kraemer. 1999. Two buffer PAGE system-based SSCP/HD analysis: a general protocol for rapid and sensitive mutation screening in cystic fibrosis and any other human genetic disease. Eur. J. Hum. Genet. 7:590-598.
    • (1999) Eur. J. Hum. Genet. , vol.7 , pp. 590-598
    • Liechti-Gallati, S.1    Schneider, V.2    Neeser, D.3    Kraemer, R.4
  • 22
    • 59749085225 scopus 로고    scopus 로고
    • Structure and function of HCV IRES domains
    • Lukavsky, P. J. 2008. Structure and function of HCV IRES domains. Virus Res. 139:166-171.
    • (2008) Virus Res. , vol.139 , pp. 166-171
    • Lukavsky, P.J.1
  • 23
    • 0033049593 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection
    • Nataraj, A. J., I. Olivos-Glander, N. Kusukawa, and W. E. Highsmith, Jr. 1999. Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection. Electrophoresis 20:1177-1185.
    • (1999) Electrophoresis , vol.20 , pp. 1177-1185
    • Nataraj, A.J.1    Olivos-Glander, I.2    Kusukawa, N.3    Highsmith Jr., W.E.4
  • 24
    • 61549139113 scopus 로고    scopus 로고
    • Antiviral resistance and impact on viral replication capacity: Evolution of viruses under antiviral pressure occurs in three phases
    • Nijhuis, M., N. M. van Maarseveen, and C. A. Boucher. 2009. Antiviral resistance and impact on viral replication capacity: evolution of viruses under antiviral pressure occurs in three phases. Handb. Exp. Pharmacol. 2009:299-320.
    • (2009) Handb. Exp. Pharmacol. , vol.2009 , pp. 299-320
    • Nijhuis, M.1    Van Maarseveen, N.M.2    Boucher, C.A.3
  • 25
    • 0024595101 scopus 로고
    • Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms
    • Orita, M., H. Iwahana, H. Kanazawa, K. Hayashi, and T. Sekiya. 1989. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc. Natl. Acad. Sci. USA 86:2766-2770.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2766-2770
    • Orita, M.1    Iwahana, H.2    Kanazawa, H.3    Hayashi, K.4    Sekiya, T.5
  • 26
    • 0032782434 scopus 로고    scopus 로고
    • Mutational analysis of a conserved tetraloop in the 5' untranslated region of hepatitis C virus identifies a novel RNA element essential for the internal ribosome entry site function
    • DOI 10.1016/S0014-5793(99)00662-6, PII S0014579399006626
    • Psaridi, L., U. Georgopoulou, A. Varaklioti, and P. Mavromara. 1999. Mutational analysis of a conserved tetraloop in the 5′ untranslated region of hepatitis C virus identifies a novel RNA element essential for the internal ribosome entry site function. FEBS Lett. 453:49-53. (Pubitemid 29335471)
    • (1999) FEBS Letters , vol.453 , Issue.1-2 , pp. 49-53
    • Psaridi, L.1    Georgopoulou, U.2    Varaklioti, A.3    Mavromara, P.4
  • 27
    • 18144379843 scopus 로고    scopus 로고
    • Compartmentalization of hepatitis C virus genotypes between plasma and peripheral blood mononuclear cells
    • DOI 10.1128/JVI.79.10.6349-6357.2005
    • Roque-Afonso, A. M., D. Ducoulombier, G. Di Liberto, R. Kara, M. Gigou, E. Dussaix, D. Samuel, and C. Feray. 2005. Compartmentalization of hepatitis C virus genotypes between plasma and peripheral blood mononuclear cells. J. Virol. 79:6349-6357. (Pubitemid 40617238)
    • (2005) Journal of Virology , vol.79 , Issue.10 , pp. 6349-6357
    • Roque-Afonso, A.-M.1    Ducoulombier, D.2    Di Liberto, G.3    Kara, R.4    Gigou, M.5    Dussaix, E.6    Samuel, D.7    Feray, C.8
  • 28
    • 0028939705 scopus 로고
    • High prevalence of a rare hepatitis C virus in patients treated in the same hemodialysis unit: Evidence for nosocomial transmission of HCV
    • Sampietro, M., S. Badalamenti, S. Salvadori, N. Corbetta, G. Graziani, G. Como, G. Fiorelli, and C. Ponticelli. 1995. High prevalence of a rare hepatitis C virus in patients treated in the same hemodialysis unit: evidence for nosocomial transmission of HCV. Kidney Int. 47:911-917.
    • (1995) Kidney Int. , vol.47 , pp. 911-917
    • Sampietro, M.1    Badalamenti, S.2    Salvadori, S.3    Corbetta, N.4    Graziani, G.5    Como, G.6    Fiorelli, G.7    Ponticelli, C.8
  • 29
    • 0027193630 scopus 로고
    • The sensitivity of single-strand conformation polymorphism analysis for the detection of single base substitutions
    • DOI 10.1006/geno.1993.1193
    • Sheffield, V. C., J. S. Beck, A. E. Kwitek, D. W. Sandstrom, and E. M. Stone. 1993. The sensitivity of single-strand conformation polymorphism analysis for the detection of single base substitutions. Genomics 16:325-332. (Pubitemid 23170885)
    • (1993) Genomics , vol.16 , Issue.2 , pp. 325-332
    • Sheffield, V.C.1    Beck, J.S.2    Kwitek, A.E.3    Sandstrom, D.W.4    Stone, E.M.5
  • 31
    • 0033730043 scopus 로고    scopus 로고
    • SSCP is not so difficult: The application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology
    • Sunnucks, P., A. C. Wilson, L. B. Beheregaray, K. Zenger, J. French, and A. C. Taylor. 2000. SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology. Mol. Ecol. 9:1699-1710.
    • (2000) Mol. Ecol. , vol.9 , pp. 1699-1710
    • Sunnucks, P.1    Wilson, A.C.2    Beheregaray, L.B.3    Zenger, K.4    French, J.5    Taylor, A.C.6
  • 32
    • 0033019289 scopus 로고    scopus 로고
    • Alterations to both the primary and predicted secondary structure of stem-loop IIIc of the hepatitis C virus 1b 5' untranslated region (5'UTR) lead to mutants severely defective in translation which cannot be complemented in trans by the wild-type 5'UTR sequence
    • Tang, S., A. J. Collier, and R. M. Elliott. 1999. Alterations to both the primary and predicted secondary structure of stem-loop IIIc of the HCV-1b 5′ untranslated region (5′ UTR) lead to mutants severely defective in translation which cannot be complemented in trans by the wild-type 5′ UTR sequence. J. Virol. 73:2359-2364. (Pubitemid 29098141)
    • (1999) Journal of Virology , vol.73 , Issue.3 , pp. 2359-2364
    • Tang, S.1    Collier, A.J.2    Elliott, R.M.3
  • 33
    • 68949197614 scopus 로고    scopus 로고
    • Hepatitis C virus quasispecies in plasma and peripheral blood mononuclear cells of treatment naive chronically infected patients
    • Epub ahead of print
    • Vera-Otarola, J., M. I. Barria, U. Leon, D. Marsac, P. Carvallo, A. Soza, and M. Lopez-Lastra. 2009. Hepatitis C virus quasispecies in plasma and peripheral blood mononuclear cells of treatment naive chronically infected patients. J. Viral Hepat. [Epub ahead of print.]
    • (2009) J. Viral Hepat.
    • Vera-Otarola, J.1    Barria, M.I.2    Leon, U.3    Marsac, D.4    Carvallo, P.5    Soza, A.6    Lopez-Lastra, M.7


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