Virgibacillus litoralis sp. nov., a moderately halophilic bacterium isolated from saline soil

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 96, Issue 3, 2009, Pages 323-329

  Chen, Yi Guang ^a   Liu, Zhu Xiang ^a   Peng, De Jiao ^a   Zhang, Yu Qin ^c   Wang, Yong Xia ^b   Tang, Shu Kun ^b   Li, Wen Jun ^b,d   Cui, Xiao Long ^b   Liu, Yan Qi ^a  

^a JISHOU UNIVERSITY   (China)

^b YUNNAN UNIVERSITY   (China)

^c INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

^d SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

Author keywords

Halophile; Naozhou Island; South China Sea; Virgibacillus litoralis sp. nov

Indexed keywords

CARDIOLIPIN; DIAMINOPIMELIC ACID; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL;

AEROBIC BACTERIUM; ANTIBIOTIC SENSITIVITY; ARTICLE; BACILLUS (ROD SHAPED BACTERIUM); BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA DNA HYBRIDIZATION; ENDOSPORE-FORMING RODS AND COCCI; FATTY ACID ANALYSIS; GRAM POSITIVE BACTERIUM; HALOPHILIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN CONTENT; RNA GENE; RNA SEQUENCE; SALINITY; SOIL; STRAIN DIFFERENCE; TEMPERATURE; VIRGIBACILLUS CARMONENSIS; VIRGIBACILLUS HALODENITRIFICANS; VIRGIBACILLUS LITORALIS; VIRGIBACILLUS NECROPOLIS;

BACILLACEAE; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SODIUM CHLORIDE; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); POSIBACTERIA; VIRGIBACILLUS; VIRGIBACILLUS CARMONENSIS; VIRGIBACILLUS HALODENITRIFICANS; VIRGIBACILLUS NECROPOLIS;

EID: 69249226301     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-009-9349-0     Document Type: Article

References (39)

1. An SY, Asahara M, Goto K, Kasai H, Yokota A (2007) Virgibacillus halophilus sp. nov., spore-forming bacteria isolated from soil in Japan. Int J Syst Evol Microbiol 57:1607-1611. doi: 10.1099/ijs.0.64307-0
2. Atlas RM, Parks LC (1993) Handbook of microbiological media. CRC Press, Boca Raton, pp 542-544
3. Chen YG, Cui XL, Pukall R, Li HM, Yang YL, Xu LH, Wen ML, Peng Q, Jiang CL (2007) Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China. Int J Syst Evol Microbiol 57:2327-2332. doi: 10.1099/ijs.0.64783-0
4. Chen YG, Cui XL, Fritze D, Chai LH, Schumann P, Wen ML, Wang YX, Xu LH, Jiang CL (2008) Virgibacillus kekensis sp. nov., a moderately halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 58:647-653. doi: 10.1099/ijs.0.65365-0
5. Chen YG, Zhang YQ, Huang K, Tang SK, Cao Y, Shi JX, Xiao HD, Cui XL, Li WJ (2009) Pigmentiphaga litoralis sp. nov., a facultatively anaerobic bacterium isolated from tidal flat sediment. Int J Syst Evol Microbiol 59:521-525. doi: 10.1099/ijs.0.002949-0
6. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259-2261. doi: 10.1099/ijs.0.64915-0
7. Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221-230
8. Cowan ST, Steel KJ (1965) Manual for the identification of medical bacteria. Cambridge University Press, London
9. Cui XL, Mao PH, Zeng M, Li WJ, Zhang LP, Xu LH, Jiang CL (2001) Streptomonospora salina gen, nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51:357-363
10. Doetsch RN (1981) Determinative methods of light microscopy. In: Gerhardt P, Murray RGE, Costilow RN, Nester EW, Wood WA, Krieg NR, Phillips GH (eds) Manual of methods for general bacteriology. American Society for Microbiology, Washington, DC, pp 21-33
11. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid- deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224-229
12. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evol Int J Org Evol 39:783-791. doi: 10.2307/2408678
13. Felsenstein J (1997) An alternative least-squares approach to inferring phylogenies from pairwise distances. Syst Biol 46:101-111. doi: 10.2307/ 2413638
14. Gregersen T (1978) Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5:123-127. doi: 10.1007/BF00498806
15. Hasegawa T, Takizawa M, Tanida S (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319-322. doi: 10.2323/jgam.29.319
16. Heyndrickx M, Lebbe L, Kersters K, De Vos P, Forsyth G, Logan NA (1998) Virgibacillus: A new genus to accommodate Bacillus pantothenticus (Proom, Knight 1950) Emended description of Virgibacillus pantothenticus. Int J Syst Bacteriol 48:99-106
17. Heyndrickx M, Lebbe L, Kersters K, Hoste B, De Wachter R, De Vos P, Forsyth G, Logan NA (1999) Proposal of Virgibacillus proomii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998. Int J Syst Bacteriol 49:1083-1090
18. Heyrman J, Logan NA, Busse HJ, Balcaen A, Lebbe L, Rodriguez-Diaz M, Swings J, De Vos P (2003) Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. Int J Syst Evol Microbiol 53:501-511. doi: 10.1099/ijs.0.02371-0
19. Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM (1985) Preparation of chromosomal, plasmid and phage DNA. In: Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (eds) Genetic manipulation of Streptomyces: A laboratory manual. F. Crowe and Sons, Norwich, pp 79-80
20. Hua NP, Hamza-Chaffai A, Vreeland RH, Isoda H, Naganuma T (2008) Virgibacillus salarius sp. nov., a halophilic bacterium isolated from a Saharan salt lake. Int J Syst Evol Microbiol 58:2409-2414. doi: 10.1099/ ijs.0.65693-0
21. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120. doi: 10.1007/BF01731581
22. Kluge AG, Farris FS (1969) Quantitative phyletics and the evolution of anurans. Syst Zool 18:1-32. doi: 10.2307/2412407
23. Komagata K, Suzuki K (1987) Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19:161-203
24. Lee JS, Lim JM, Lee KC, Lee JC, Park YH, Kim CJ (2006) Virgibacillus koreensis sp. nov., a novel bacterium from salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int J Syst Evol Microbiol 56:251-257. doi: 10.1099/ijs.0.63734-0
25. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
26. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241. doi: 10.1016/0167-7012(84)90018-6
27. Quesada T, Aguilera M, Morillo JA, Ramos-Cormenzana A, Monteoliva-Sánchez M (2007) Virgibacillus olivae sp. nov., isolated from waste wash-water from processing of Spanish-style green olives. Int J Syst Evol Microbiol 57:906-910. doi: 10.1099/ijs.0.64550-0
28. Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
29. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc., Newark
30. Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607-654
31. Tamaoka J, Katayama-Fujimura Y, Kuraishi H (1983) Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54:31-36
32. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599. doi: 10.1093/molbev/msm092
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882. doi: 10.1093/nar/25.24.4876
34. Ventosa A, Quesada E, Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A (1982) Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128:1959-1968
35. Wang CY, Chang CC, Ng CC, Chen TW, Shyu YT (2008) Virgibacillus chiguensis sp. nov., a novel halophilic bacterium isolated from Chigu, a previously commercial saltern located in southern Taiwan. Int J Syst Evol Microbiol 58:341-345. doi: 10.1099/ijs.0.64996-0
36. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE (1987) International committee on systematic bacteriology, Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464 other authors
37. Xiao HD, Chen YG, Liu ZX, Huang K, Li WJ, Cui XL, Zhang L, Yi LB (2009) Phylogenetic diversity of cultivable bacteria associated with a sea anemone from coast of the Naozhou Island in Zhanjiang, China. Acta Microbiol Sin 49:246-250
38. Yoon JH, Oh TK, Park YH (2004) Transfer of Bacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov. Int J Syst Evol Microbiol 54:2163-2167. doi: 10.1099/ijs.0.63196-0
39. Yoon JH, Kang SJ, Lee SY, Lee MH, Oh TK (2005) Virgibacillus dokdonensis sp. nov., isolated from a Korean island, Dokdo, located at the edge of the East Sea in Korea. Int J Syst Evol Microbiol 55:1833-1837. doi: 10.1099/ijs.0.63613-0