Molecular characterization of sapoviruses detected in sporadic gastroenteritis cases in 2007 in Ehime Prefecture, Japan

Japanese Journal of Infectious Diseases

Volumn 62, Issue 3, 2009, Pages 246-248

  Ootsuka, Yuka ^a   Yamashita, Yasutaka ^a   Ichikawa, Takako ^a,c   Kondo, Reiko ^a   Oseto, Mitsuaki ^a   Katayama, Kazuhiko ^b   Takeda, Naokazu ^b,d   Oka, Tomoichiro ^b  

^a EHIME PREFECTURAL INSTITUTE OF PUBLIC HEALTH AND ENVIRONMENTAL SCIENCE   (Japan)

^b NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^c EHIME PREFECTURAL CENTRAL HOSPITAL   (Japan)

^d NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ABDOMINAL PAIN; ARTICLE; CHILD; CHILL; CLINICAL ARTICLE; DIARRHEA; DISEASE SURVEILLANCE; ELECTRON MICROSCOPY; FEMALE; FEVER; GASTROENTERITIS; GENE AMPLIFICATION; HEADACHE; HUMAN; JAPAN; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SAPOVIRUS; VIRUS CAPSID; VIRUS DETECTION; VIRUS GENOME; VIRUS STRAIN; VOMITING; EPIDEMIC; EPIDEMIOLOGY; GENETICS; HEALTH SURVEY; INFANT; METHODOLOGY; PHYLOGENY; POLYMERASE CHAIN REACTION; PRESCHOOL CHILD; SEQUENCE ANALYSIS; STATISTICAL ANALYSIS; VIROLOGY; VIRUS INFECTION;

CALICIVIRIDAE INFECTIONS; CHILD; CHILD, PRESCHOOL; DATA INTERPRETATION, STATISTICAL; DISEASE OUTBREAKS; EPIDEMIOLOGY, MOLECULAR; FEMALE; GASTROENTERITIS; GENOME, VIRAL; HUMANS; INFANT; JAPAN; MALE; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION SURVEILLANCE; RNA, VIRAL; SAPOVIRUS; SEQUENCE ANALYSIS, RNA;

EID: 69249223063     PISSN: 13446304     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (21)

1. Johansson, P.J., Bergentoft, K., Larsson, P.A., et al. (2005): A nosocomial sapovirus-associated outbreak of gastroenteritis in adults. Scand. J. Infect. Dis., 37, 200-204.
2. Usuku, S., Kumazaki, M., Kitamura, K., et al. (2008): An outbreak of food-borne gastroenteritis due to sapovirus among junior high school students. Jpn. J. Infect. Dis., 61, 438-441.
3. Ishida, S., Yoshizumi, S., Miyoshi, M., et al. (2008): Characterization of sapoviruses detected in Hokkaido, Japan. Jpn. J. Infect. Dis., 61, 504-506.
4. Akihara, S., Phan, T.G., Nguyen, T.A., et al. (2005): Identification of sapovirus infection among Japanese infants in a day care center. J. Med. Virol., 77, 595-601.
5. Hansman, G.S., Saito, H., Shibata, C., et al. (2007): Outbreak of gastroenteritis due to sapovirus. J. Clin. Microbiol., 45, 1347-1349.
6. Chiba, S., Nakata, S., Numata-Kinoshita, K., et al. (2000): Sapporo virus: history and recent findings. J. Infect Dis., 181 (Suppl. 2), S303-308.
7. Wu, F.T., Oka, T., Takeda, N., et al. (2008): Acute gastroenteritis caused by GI/2 sapovirus, Taiwan, 2007. Emerg. Infect Dis., 14, 1169-1171.
8. Hansman, G.S., Oka, T., Katayama, K., et al. (2007): Human sapoviruses: genetic diversity, recombination, and classification. Rev. Med. Virol., 17, 133-141.
9. Farkas, T., Zhong, W.M., Jing, Y., et al. (2004): Genetic diversity among sapoviruses. Arch. Virol., 149, 1309-1323.
10. Honma, S., Nakata, S., Sakai, Y., et al. (2001): Sensitive detection and differentiation of Sapporo virus, a member of the family Caliciviridae, by standard and booster nested polymerase chain reaction. J. Med. Virol., 65, 413-417.
11. Vinje, J., Deijl, H., van der Heide, R., et al. (2000): Molecular detection and epidemiology of Sapporo-like viruses. J. Clin. Microbiol., 38, 530-536.
12. Yan, H., Yagyu, F., Okitsu, S., et al. (2003): Detection of norovinis (GI, GII), Sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR. J. Virol. Methods, 114, 37-44.
13. Jiang, X., Huang, P.W., Zhong, W.M., et al. (1999): Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR. J. Virol. Methods, 83, 145-154.
14. Okada, M., Yamashita, Y., Oseto, M., et al. (2006): The detection of human sapoviruses with universal and genogroup-specific primers. Arch. Virol., 151, 2503-2509.
15. Okada, M., Shinozaki, K., Ogawa, T., et al. (2002): Molecular epidemiology and phylogenetic analysis of Sapporo-like viruses. Arch. Virol., 147, 1445-1451.
16. Oka, T., Katayama, K., Hansman, G.S., et al. (2006): Detection of human sapovirus by real-time reverse transcription-polymerase chain reaction. J. Med. Virol., 78, 1347-1353.
17. Kimura, M. (1980): A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
18. Perriere, G. and Gouy, M. (1996): WWW-query; an on-line retrieval system for biological sequence banks. Biochimie, 78, 364-369.
19. Okada, M., Yamashita, Y., Oseto, M., et al. (2006): Genetic variability in the sapovirus capsid protein. Virus Genes, 33, 157-161.
20. Hansman, G.S., Takeda, N., Oka, T., et al. (2005): Intergenogroup recombination in sapoviruses. Emerg. Infect. Dis., 11, 1916-1920.
21. Pang, X., Lee, B., Tyrrell, G., et al. (2009): Epidemiology and genotype analysis of sapovirus associated with gastroenteritis outbreaks in Alberta, Canada: 2004-2007. J. Infect. Dis., 199, 547-551.