Thermostable and site-specific DNA binding of the gene product ORF56 from the Sulfolobus islandicus plasmid pRN1, a putative archael plasmid copy control protein

Nucleic Acids Research

Volumn 29, Issue 4, 2001, Pages 904-913

  Lipps, Georg ^a   Stegert, Mario ^a,b   Krauss, Gerhard ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

^b FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; DNA BINDING PROTEIN; DOUBLE STRANDED DNA; GENE PRODUCT; ION; OLIGODEOXYNUCLEOTIDE; RECOMBINANT PROTEIN; REPETITIVE DNA; SODIUM CHLORIDE; TETRAMER;

ANISOTROPY; ARCHAEBACTERIUM; ARTICLE; BINDING SITE; CIRCULAR DICHROISM; COMPLEX FORMATION; CONTROLLED STUDY; CROSS LINKING; DISSOCIATION CONSTANT; DOWN REGULATION; ELECTROPHORETIC MOBILITY; ESCHERICHIA COLI; FLUORESCENCE; GEL FILTRATION; GENE LOCATION; GENE TARGETING; GENETIC TRANSCRIPTION; HEAT; NONHUMAN; PLASMID; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; PROTEIN EXPRESSION; PROTEIN STRUCTURE; SALINITY; STOICHIOMETRY; SULFOLOBUS; TEMPERATURE; THERMOSTABILITY;

ARCHAEA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; SULFOLOBUS; SULFOLOBUS ISLANDICUS;

EID: 0035865841     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.4.904     Document Type: Article

References (34)

1. The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: Demonstration of infectivity and of transfection with viral DNA
2. Genetic requirements for the function of the archaeal virus SSV1 in Sulfolobus solfataricus: Construction and testing of viral shuttle vectors
3. Screening for Sulfolobales, their plasmids and their viruses in Icelandic solfataras
4. Complete nucleotide sequence of the Sulfolobus islandicus multicopy plasmid pRN1
5. Evolution of the family of pRN plasmids and their integrase-mediated insertion into the chromosome of the crenarchaeon Sulfolobus solfataricus
6. Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry
7. The genetic element pSSVx of the extremely thermophilic crenarchaeon sulfolobus is a hybrid between a plasmid and a virus
8. Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of related plasmids from extremely thermophilic and acidophilic archaea
9. Plasmid rolling circle replication and its control
10. Rolling-circle replication of bacterial plasmids
11. Role of the hydrophobic effect in stability of site-specific protein-DNA complexes
12. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa
13. Temperature dependence of the hydrophobic interaction in protein folding
14. Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase
15. Absorbance melting curves of RNA
16. Quantitative analysis of protein far UV circular dichroism spectra by neural networks
17. GOR method for predicting protein secondary structure from amino acid sequence
18. Circular dichroism
19. The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator
20. Fluorescence methods for studying equilibrium macromolecule-ligand interactions
21. Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA
22. Thermodynamics of sequence-specific protein-DNA interactions
23. Control of DNA topology during thermal stress in hyperthermophilic archaea: DNA topoisomerase levels, activities and induced thermotolerance during heat and cold shock in Sulfolobus
24. Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters
25. Orientation of the transcription preinitiation complex in archaea
26. Plasmid pLS1-encoded RepA protein regulates transcription from repAB promoter by binding to a DNA sequence containing a 13-base pair symmetric element
27. Regulation of plasmid pE194 replication: Control of cop-repF operon transcription by Cop and of repF translation by countertranscript RNA
28. Arc repressor is tetrameric when bound to operator DNA
29. The Arc and Mnt repressors. A new class of sequence-specific DNA-binding protein
30. DNA-induced conformational changes in bacteriophage 434 repressor
31. Coupling of local folding to site-specific binding of proteins to DNA
32. DNA recognition by beta-sheets in the Arc repressor-operator crystal structure
33. Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus
34. Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB and its effect on promoter strength