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Volumn 106, Issue 31, 2009, Pages 12741-12746

Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing

Author keywords

Brain; E18; Neural diseases; P7; Transcription factors

Indexed keywords

COMPLEXIN 2; MEMBRANE PROTEIN; MESSENGER RNA; SYNAPTOTAGMIN; SYNTAXIN; TRANSCRIPTION FACTOR SOX11; TRANSCRIPTION FACTOR SOX4; TRANSCRIPTOME; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; TRANSCRIPTION FACTOR;

EID: 69149097967     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0902417106     Document Type: Article
Times cited : (78)

References (41)
  • 1
    • 0028294425 scopus 로고
    • The subplate, a transient neocortical structure: Its role in the development of connections between thalamus and cortex
    • Allendoerfer KL, Shatz CJ (1994) The subplate, a transient neocortical structure: Its role in the development of connections between thalamus and cortex. Annu Rev Neurosci 17:185-218.
    • (1994) Annu Rev Neurosci , vol.17 , pp. 185-218
    • Allendoerfer, K.L.1    Shatz, C.J.2
  • 2
    • 33746811064 scopus 로고    scopus 로고
    • A century of progress in corticoneurogenesis: From silver impregnation to genetic engineering
    • I3-17
    • Rakic P (2006) A century of progress in corticoneurogenesis: From silver impregnation to genetic engineering. Cereb Cortex 16 Suppl 1:i3-17.
    • (2006) Cereb Cortex , vol.16 , Issue.SUPPL. 1
    • Rakic, P.1
  • 3
    • 13544273916 scopus 로고    scopus 로고
    • Thrombospondins are astrocyte-secreted proteins that promote CNS synaptogenesis
    • Christopherson KS, et al. (2005) Thrombospondins are astrocyte-secreted proteins that promote CNS synaptogenesis. Cell 120:421-433.
    • (2005) Cell , vol.120 , pp. 421-433
    • Christopherson, K.S.1
  • 5
    • 0028895055 scopus 로고
    • Mouse Otx2 functions in the formation and patterning of rostral head
    • Matsuo I, Kuratani S, Kimura C, Takeda N, Aizawa S (1995) Mouse Otx2 functions in the formation and patterning of rostral head. Genes Dev 9:2646-2658.
    • (1995) Genes Dev , vol.9 , pp. 2646-2658
    • Matsuo, I.1    Kuratani, S.2    Kimura, C.3    Takeda, N.4    Aizawa, S.5
  • 6
    • 4344669830 scopus 로고    scopus 로고
    • Gene expression analysis of the late embryonic mouse cerebral cortex using DNA microarray: Identification of several region- and layer-specific genes
    • Funatsu N, Inoue T, Nakamura S (2004) Gene expression analysis of the late embryonic mouse cerebral cortex using DNA microarray: Identification of several region- and layer-specific genes. Cereb Cortex 14:1031-1044.
    • (2004) Cereb Cortex , vol.14 , pp. 1031-1044
    • Funatsu, N.1    Inoue, T.2    Nakamura, S.3
  • 7
    • 0035852759 scopus 로고    scopus 로고
    • The effects of aging on gene expression in the hypothalamus and cortex of mice
    • Jiang CH, Tsien JZ, Schultz PG, Hu Y (2001) The effects of aging on gene expression in the hypothalamus and cortex of mice. Proc Natl Acad Sci USA 98:1930-1934.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 1930-1934
    • Jiang, C.H.1    Tsien, J.Z.2    Schultz, P.G.3    Hu, Y.4
  • 8
    • 0000847978 scopus 로고    scopus 로고
    • Gene-expression profile of the aging brain in mice
    • Lee CK, Weindruch R, Prolla TA (2000) Gene-expression profile of the aging brain in mice. Nat Genet 25:294-297.
    • (2000) Nat Genet , vol.25 , pp. 294-297
    • Lee, C.K.1    Weindruch, R.2    Prolla, T.A.3
  • 9
    • 0035956926 scopus 로고    scopus 로고
    • Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mousec DNA arrays
    • Miki R, et al. (2001) Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mousec DNA arrays. Proc Natl Acad Sci USA 98:2199-2204.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 2199-2204
    • Miki, R.1
  • 10
    • 0242351925 scopus 로고    scopus 로고
    • DNA microarray profiling of developing PS1-deficient mouse brain reveals complex and coregulated expression changes
    • Mirnics ZK, et al. (2003) DNA microarray profiling of developing PS1-deficient mouse brain reveals complex and coregulated expression changes. Mol Psychiatry 8:863-878.
    • (2003) Mol Psychiatry , vol.8 , pp. 863-878
    • Mirnics, Z.K.1
  • 11
    • 0035902553 scopus 로고    scopus 로고
    • Genome-wide gene expression profiles of the developing mouse hippocampus
    • Mody M, et al. (2001) Genome-wide gene expression profiles of the developing mouse hippocampus. Proc Natl Acad Sci USA 98:8862-8867.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8862-8867
    • Mody, M.1
  • 12
    • 0035228759 scopus 로고    scopus 로고
    • Analysis of strain and regional variation in gene expression in mouse brain
    • RESEARCH0042
    • Pavlidis P, Noble WS (2001) Analysis of strain and regional variation in gene expression in mouse brain. Genome Biol 2:RESEARCH0042.
    • (2001) Genome Biol , vol.2
    • Pavlidis, P.1    Noble, W.S.2
  • 13
    • 33845765648 scopus 로고    scopus 로고
    • Microarray analysis of the developing cortex
    • Semeralul MO, et al. (2006) Microarray analysis of the developing cortex. J Neurobiol 66:1646-1658.
    • (2006) J Neurobiol , vol.66 , pp. 1646-1658
    • Semeralul, M.O.1
  • 14
    • 22544477508 scopus 로고    scopus 로고
    • Adult mouse brain gene expression patterns bear an embryologic imprint
    • Zapala MA, et al. (2005) Adult mouse brain gene expression patterns bear an embryologic imprint. Proc Natl Acad Sci USA 102:10357-10362.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 10357-10362
    • Zapala, M.A.1
  • 15
    • 38149129457 scopus 로고    scopus 로고
    • A transcriptome database for astrocytes, neurons, and oligodendrocytes: A new resource for understanding brain development and function
    • Cahoy JD, et al. (2008) A transcriptome database for astrocytes, neurons, and oligodendrocytes: A new resource for understanding brain development and function. J Neurosci 28:264-278.
    • (2008) J Neurosci , vol.28 , pp. 264-278
    • Cahoy, J.D.1
  • 16
    • 44849092474 scopus 로고    scopus 로고
    • The new paradigm of flow cell sequencing
    • Holt RA, Jones SJ (2008) The new paradigm of flow cell sequencing. Genome Res 18:839-846.
    • (2008) Genome Res , vol.18 , pp. 839-846
    • Holt, R.A.1    Jones, S.J.2
  • 17
    • 39749108026 scopus 로고    scopus 로고
    • Next-generation sequencing: The race is on
    • von Bubnoff A (2008) Next-generation sequencing: The race is on. Cell 132:721-723.
    • (2008) Cell , vol.132 , pp. 721-723
    • von Bubnoff, A.1
  • 18
    • 45849130924 scopus 로고    scopus 로고
    • Emerging DNA sequencing technologies for human genomic medicine
    • Strausberg RL, Levy S, Rogers YH (2008) Emerging DNA sequencing technologies for human genomic medicine. Drug Discov Today 13:569-577.
    • (2008) Drug Discov Today , vol.13 , pp. 569-577
    • Strausberg, R.L.1    Levy, S.2    Rogers, Y.H.3
  • 19
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y (2008) RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18:1509-1517.
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 21
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome definedby RNA sequencing
    • Nagalakshmi U, et al. (2008) The transcriptional landscape of the yeast genome definedby RNA sequencing. Science 320:1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1
  • 22
    • 47649124124 scopus 로고    scopus 로고
    • A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
    • Sultan M, et al. (2008) A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321:956-960.
    • (2008) Science , vol.321 , pp. 956-960
    • Sultan, M.1
  • 23
    • 46249096804 scopus 로고    scopus 로고
    • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    • Wilhelm BT, et al. (2008) Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 453:1239-1243.
    • (2008) Nature , vol.453 , pp. 1239-1243
    • Wilhelm, B.T.1
  • 24
    • 34250376884 scopus 로고    scopus 로고
    • A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
    • Blankenberg D, et al. (2007) A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly. Genome Res 17:960-964.
    • (2007) Genome Res , vol.17 , pp. 960-964
    • Blankenberg, D.1
  • 25
    • 25844449770 scopus 로고    scopus 로고
    • Galaxy: A platform for interactive large-scale genome analysis
    • Giardine B, et al. (2005) Galaxy: A platform for interactive large-scale genome analysis. Genome Res 15:1451-1455.
    • (2005) Genome Res , vol.15 , pp. 1451-1455
    • Giardine, B.1
  • 26
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 27
    • 55549089660 scopus 로고    scopus 로고
    • Accurate whole human genome sequencing using reversible terminator chemistry
    • Bentley DR, et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456:53-59.
    • (2008) Nature , vol.456 , pp. 53-59
    • Bentley, D.R.1
  • 28
    • 41249096306 scopus 로고    scopus 로고
    • Using quality scores and longer reads improves accuracy of Solexa read mapping
    • Smith AD, Xuan Z, Zhang MQ (2008) Using quality scores and longer reads improves accuracy of Solexa read mapping. BMC Bioinformatics 9:128.
    • (2008) BMC Bioinformatics , vol.9 , pp. 128
    • Smith, A.D.1    Xuan, Z.2    Zhang, M.Q.3
  • 29
    • 33646133653 scopus 로고    scopus 로고
    • The UCSC known genes
    • Hsu F, et al. (2006) The UCSC known genes. Bioinformatics 22:1036-1046.
    • (2006) Bioinformatics , vol.22 , pp. 1036-1046
    • Hsu, F.1
  • 30
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent WJ, et al. (2002) The human genome browser at UCSC. Genome Res 12:996-1006.
    • (2002) Genome Res , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 31
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Birney E, et al. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816.
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1
  • 32
    • 56549101959 scopus 로고    scopus 로고
    • Alternative isoform regulation in human tissue transcriptomes
    • Wang ET, et al. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature 456:470-476.
    • (2008) Nature , vol.456 , pp. 470-476
    • Wang, E.T.1
  • 33
    • 0035369112 scopus 로고    scopus 로고
    • NMDA receptor subunits: Diversity, development and disease
    • Cull-Candy S, Brickley S, Farrant M (2001) NMDA receptor subunits: Diversity, development and disease. Curr Opin Neurobiol 11:327-335.
    • (2001) Curr Opin Neurobiol , vol.11 , pp. 327-335
    • Cull-Candy, S.1    Brickley, S.2    Farrant, M.3
  • 34
    • 19944401504 scopus 로고    scopus 로고
    • Mouse brain organization revealed through direct genome-scale TF expression analysis
    • Gray PA, et al. (2004) Mouse brain organization revealed through direct genome-scale TF expression analysis. Science 306:2255-2257.
    • (2004) Science , vol.306 , pp. 2255-2257
    • Gray, P.A.1
  • 35
    • 48449089927 scopus 로고    scopus 로고
    • Experience-dependent transfer of Otx2 homeoprotein into the visual cortex activates postnatal plasticity
    • Sugiyama S, et al. (2008) Experience-dependent transfer of Otx2 homeoprotein into the visual cortex activates postnatal plasticity. Cell 134:508-520.
    • (2008) Cell , vol.134 , pp. 508-520
    • Sugiyama, S.1
  • 36
    • 48249110960 scopus 로고    scopus 로고
    • Wnt signaling in neural circuit assembly
    • Salinas PC, Zou Y (2008) Wnt signaling in neural circuit assembly. Annu Rev Neurosci 31:339-358.
    • (2008) Annu Rev Neurosci , vol.31 , pp. 339-358
    • Salinas, P.C.1    Zou, Y.2
  • 37
    • 21044450377 scopus 로고    scopus 로고
    • Novel brain wiring functions for classical morphogens: A role as graded positional cues in axon guidance
    • Charron F, Tessier-Lavigne M (2005) Novel brain wiring functions for classical morphogens: A role as graded positional cues in axon guidance. Development 132:2251-2262.
    • (2005) Development , vol.132 , pp. 2251-2262
    • Charron, F.1    Tessier-Lavigne, M.2
  • 38
    • 34548087852 scopus 로고    scopus 로고
    • A novel role for autophagy in neurodevelopment
    • Cecconi F, et al. (2007) A novel role for autophagy in neurodevelopment. Autophagy 3:506-508.
    • (2007) Autophagy , vol.3 , pp. 506-508
    • Cecconi, F.1
  • 39
    • 34347344990 scopus 로고    scopus 로고
    • Ambra1 regulates autophagy and development of the nervous system
    • Fimia GM, et al. (2007) Ambra1 regulates autophagy and development of the nervous system. Nature 447:1121-1125.
    • (2007) Nature , vol.447 , pp. 1121-1125
    • Fimia, G.M.1
  • 40
    • 4644370139 scopus 로고    scopus 로고
    • Early neural cell death: Dying to become neurons
    • Yeo W, Gautier J (2004) Early neural cell death: Dying to become neurons. Dev Biol 274:233-244.
    • (2004) Dev Biol , vol.274 , pp. 233-244
    • Yeo, W.1    Gautier, J.2
  • 41
    • 4544341015 scopus 로고    scopus 로고
    • Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistl Appl. Genet. Mol. Biol. 3:Article3.
    • Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistl Appl. Genet. Mol. Biol. 3:Article3.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.