Construction of photon-fueled DNA nanomachines by tethering azobenzenes as engines

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5347 LNCS, Issue , 2009, Pages 21-32

  Liang, Xingguo ^a   Nishioka, Hidenori ^a   Takenaka, Nobutaka ^a   Asanuma, Hiroyuki ^a,b  

^a NAGOYA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

Azobenzene; DNA nanomachine; Hybridization; Photoregulation

Indexed keywords

AZOBENZENE DERIVATIVES; CYCLING EFFICIENCY; DNA HYBRIDIZATION; DNA NANOMACHINE; DNA TWEEZERS; ENVIRONMENT FRIENDLY; HYBRIDIZATION; ISOPROPYL GROUPS; MODIFIED DNA; NANO SCALE; NANOMACHINES; PHOTO-IRRADIATION; PHOTOREGULATION; UV-LIGHT IRRADIATION; VISIBLE-LIGHT IRRADIATION; WORK PRINCIPLE;

AZOBENZENE; CALCULATIONS; COMPUTER SCIENCE; FLUORINE CONTAINING POLYMERS; GENES; GENETIC PROGRAMMING; IRRADIATION; NUCLEIC ACIDS; OLIGONUCLEOTIDES; RADIATION;

DNA;

EID: 69049086577     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-03076-5_3     Document Type: Conference Paper

References (18)

1. Seeman, N.C., Lukeman, P.S.: Nucleic Acid Nanostructures: Bottom-Up Control of Geometry on the Nanoscale. Rep. Prog. Phys. 68, 237-270 (2005)
2. Shih, W.M., Quispe, J.D., Joyce, G.F.: A 1.7-Kilobase Single-Stranded DNA that Folds into a Nanoscale Octahedron. Nature 427, 618-621 (2004)
3. Mirkin, C.A., Letsinger, R.L., Mucic, R.C., Storhoff, J.J.: A DNA-Based Method for Rationally Assembling Nanoparticles into Macroscopic Materials. Nature 382, 607-609 (1996)
4. Chen, J.H., Seeman, N.C.: Synthesis from DNA of a Molecule with the Connectivity of a Cube. Nature 350, 631-633 (1991)
5. Benenson, Y., Paz-Elizur, T., Adar, R., Keinan, E., Livneh, Z., Shapiro, E.: Programmable and Autonomous Computing Machine Made of Biomolecules. Nature 414, 430-434 (2001)
6. Seeman, N.C.: From Genes to Machines: DNA Nanomechanical Devices. Trends Biochem. Sci. 30, 119-125 (2005)
7. Beissenhirtz, M.K., Willner, I.: DNA-Based Machines. Org. Biomol. Chem. 4, 3392-3401 (2006)
8. Yurke, B., Turberfield, A.J., Mills, A.P., Simmel, F.C., Neumann, J.L.: A DNA-Fuelled Molecular Machine Made of DNA. Nature 406, 605-608 (2000)
9. Beyer, S., Simmel, F.C.: A Modular DNA Signal Translator for the Controlled Release of a Protein by an Aptamer. Nucleic Acid Res. 34, 1581-1587 (2006)
10. Shin, J.S., Pierce, N.A.: A Synthetic DNA Walker for Molecular Transport. J. Am. Chem. Soc. 126, 10834-10835 (2004)
11. Tian, Y., Mao, C.D.: Molecular Gears: A Pair of DNA Circles Continuously Rolls against Each Other. J. Am. Chem. Soc. 126, 11410-11411 (2004)
12. Asanuma, H., Liang, X.G., Nishioka, H., Matsunaga, D., Liu, M.Z., Komiyama, M.: Synthesis of Azobenzene-Tethered DNA for Reversible Photo-Regulation of DNA Functions: Hybridization and Transcription. Nat. Protocols 2, 203-212 (2007)
13. Asanuma, H., Ito, T., Yoshida, T., Liang, X.G., Komiyama, M.: Photoregulation of the Formation and Dissociation of a DNA Duplex by Using the cis-trans Isomerization of Azobenzene. Angew. Chem. Int. Ed. 38, 2393-2395 (1999)
14. Asanuma, H., Takarada, T., Yoshida, T., Liang, X.G., Komiyama, M.: Enantioselective Incorporation of Azobenzene into Oligodeoxyribonucleotide for Effective Photoregulation of Duplex Formation. Angew. Chem. Int. Ed. Engl. 40, 2671-2673 (2001)
15. Asanuma, H., Liang, X.G., Yoshida, T., Komiyama, M.: Photocontrol of DNA Duplex Formation by Using Azobenzene-Bearing Oligonucleotides. Chem. BioChem. 2, 39-44 (2001)
16. Liang, X.G., Asanuma, H., Kashida, H., Takasu, A., Sakamoto, T., Kawai, G., Komiyama, M.: NMR Study on the Photoresponsive DNA Tethering an Azobenzene: Assignment of the Absolute Configuration of Two Diastereomers and Structure Determination of Their Duplex in the trans-Form. J. Am. Chem. Soc. 125, 16408-16415 (2003)
17. Liang, X.G., Nishioka, H., Takenaka, N., Asanuma, H.: A DNA Nanomachine Powered by Light Irradiation. Chem BioChem. 9, 702-705 (2008)
18. Liang, X.G., Takenaka, N., Nishioka, H., Asanuma, H.: Molecular Design for Reversing the Photoswiching Mode of Turning ON and OFF DNA Hybridization. Chem. Asian J. 3, 553-560 (2008)