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Volumn 10, Issue , 2009, Pages

Stretches of alternating pyrimidine/purines and purines are respectively linked with pathogenicity and growth temperature in prokaryotes

Author keywords

[No Author keywords available]

Indexed keywords

PURINE; PURINE DERIVATIVE; PYRIMIDINE; PYRIMIDINE DERIVATIVE;

EID: 68949209106     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-346     Document Type: Article
Times cited : (6)

References (28)
  • 3
    • 34247844518 scopus 로고    scopus 로고
    • Different clustering of genomes across life using the A-T-C-G and degenerate R-Y alphabets: Early and late signaling on genome evolution?
    • 10.1007/s00239-006-0178-8 17479343
    • Kirzhner V Paz A Volkovich Z Nevo E Korol A Different clustering of genomes across life using the A-T-C-G and degenerate R-Y alphabets: Early and late signaling on genome evolution? Journal of Molecular Evolution 2007, 64:448-456 10.1007/s00239-006-0178-8 17479343
    • (2007) Journal of Molecular Evolution , vol.64 , pp. 448-456
    • Kirzhner, V.1    Paz, A.2    Volkovich, Z.3    Nevo, E.4    Korol, A.5
  • 4
    • 33645109092 scopus 로고    scopus 로고
    • Genome update: Purine strand bias in 280 bacterial genomes
    • 10.1099/mic.0.28637-0 16514138
    • Champ PC Binnewies TT Nielsen N Zinman G Kiil K Wu H et al Genome update: Purine strand bias in 280 bacterial genomes Microbiology 2006, 152:579-583 10.1099/mic.0.28637-0 16514138
    • (2006) Microbiology , vol.152 , pp. 579-583
    • Champ, P.C.1    Binnewies, T.T.2    Nielsen, N.3    Zinman, G.4    Kiil, K.5    Wu, H.6
  • 6
    • 34447108347 scopus 로고    scopus 로고
    • Replication-associated purine asymmetry may contribute to strand-biased gene distribution
    • 10.1016/j.ygeno.2007.04.002 17532183
    • Hu JF Zhao XQ Yu J Replication-associated purine asymmetry may contribute to strand-biased gene distribution Genomics 2007, 90:186-194 10.1016/j.ygeno.2007.04.002 17532183
    • (2007) Genomics , vol.90 , pp. 186-194
    • Hu, J.F.1    Zhao, X.Q.2    Yu, J.3
  • 7
    • 33644543741 scopus 로고    scopus 로고
    • Z-DNA-forming sequences generate large-scale deletions in mammalian cells
    • 10.1073/pnas.0511084103 1413824 16473937
    • Wang G Christensen LA Vasquez KM Z-DNA-forming sequences generate large-scale deletions in mammalian cells Proc Natl Acad Sci USA 2006, 103:2677-2682 10.1073/pnas.0511084103 1413824 16473937
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 2677-2682
    • Wang, G.1    Christensen, L.A.2    Vasquez, K.M.3
  • 8
    • 23944506044 scopus 로고    scopus 로고
    • Mobile genetic elements: The agents of open source evolution
    • 10.1038/nrmicro1235 16138100
    • Frost LS Leplae R Summers AO Toussaint A Mobile genetic elements: The agents of open source evolution Nature Reviews Microbiology 2005, 3:722-732 10.1038/nrmicro1235 16138100
    • (2005) Nature Reviews Microbiology , vol.3 , pp. 722-732
    • Frost, L.S.1    Leplae, R.2    Summers, A.O.3    Toussaint, A.4
  • 10
    • 33645322119 scopus 로고    scopus 로고
    • Formation and positioning of nucleosomes: Effect of sequence-dependent long-range correlated structural disorder
    • 10.1140/epje/i2005-10053-3 16477390
    • Vaillant C Audit B Thermes C Arneodo A Formation and positioning of nucleosomes: Effect of sequence-dependent long-range correlated structural disorder Eur Phys J E Soft Matter 2006, 19:263-277 10.1140/ epje/i2005-10053-3 16477390
    • (2006) Eur Phys J E Soft Matter , vol.19 , pp. 263-277
    • Vaillant, C.1    Audit, B.2    Thermes, C.3    Arneodo, A.4
  • 12
    • 34347205992 scopus 로고    scopus 로고
    • Z-DNA, an active element in the genome
    • 10.2741/2399 17485386
    • Wang G Vasquez KM Z-DNA, an active element in the genome Front Biosci 2007, 12:4424-4438 10.2741/2399 17485386
    • (2007) Front Biosci , vol.12 , pp. 4424-4438
    • Wang, G.1    Vasquez, K.M.2
  • 14
    • 37449018793 scopus 로고    scopus 로고
    • A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions
    • 10.1128/JB.01264-07 2168593 17933898
    • Tuanyok A Auerbach RK Brettin TS Bruce DC Munk AC Detter JC et al A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions Journal of Bacteriology 2007, 189:9044-9049 10.1128/JB.01264-07 2168593 17933898
    • (2007) Journal of Bacteriology , vol.189 , pp. 9044-9049
    • Tuanyok, A.1    Auerbach, R.K.2    Brettin, T.S.3    Bruce, D.C.4    Munk, A.C.5    Detter, J.C.6
  • 15
    • 0037008836 scopus 로고    scopus 로고
    • Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes
    • 10.1007/s00239-002-2323-3 12187379
    • Naya H Romero H Zavala A Alvarez B Musto H Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes J Mol Evol 2002, 55:260-264 10.1007/s00239-002-2323-3 12187379
    • (2002) J Mol Evol , vol.55 , pp. 260-264
    • Naya, H.1    Romero, H.2    Zavala, A.3    Alvarez, B.4    Musto, H.5
  • 16
    • 33745759756 scopus 로고    scopus 로고
    • Genomic GC level, optimal growth temperature, and genome size in prokaryotes
    • 10.1016/j.bbrc.2006.06.054 16815305
    • Musto H Naya H Zavala A Romero H varez-Valin F Bernardi G Genomic GC level, optimal growth temperature, and genome size in prokaryotes Biochem Biophys Res Commun 2006, 347:1-3 10.1016/j.bbrc.2006.06.054 16815305
    • (2006) Biochem Biophys Res Commun , vol.347 , pp. 1-3
    • Musto, H.1    Naya, H.2    Zavala, A.3    Romero, H.4    Varez-Valin, F.5    Bernardi, G.6
  • 17
    • 7644238105 scopus 로고    scopus 로고
    • Correlations between genomic GC levels and optimal growth temperatures are not 'robust'
    • 10.1016/j.bbrc.2004.10.051 15530402
    • Marashi SA Ghalanbor Z Correlations between genomic GC levels and optimal growth temperatures are not 'robust' Biochem Biophys Res Commun 2004, 325:381-383 10.1016/j.bbrc.2004.10.051 15530402
    • (2004) Biochem Biophys Res Commun , vol.325 , pp. 381-383
    • Marashi, S.A.1    Ghalanbor, Z.2
  • 18
    • 0030900384 scopus 로고    scopus 로고
    • Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes
    • 10.1007/PL00006186 9169555
    • Galtier N Lobry JR Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes Journal of Molecular Evolution 1997, 44:632-636 10.1007/PL00006186 9169555
    • (1997) Journal of Molecular Evolution , vol.44 , pp. 632-636
    • Galtier, N.1    Lobry, J.R.2
  • 19
    • 62749130853 scopus 로고    scopus 로고
    • Environmental Shaping of Ribosomal RNA Nucleotide Composition
    • 10.1007/s00248-008-9446-z 18825450
    • Rudi K Environmental Shaping of Ribosomal RNA Nucleotide Composition Microbial Ecology 2009, 57:469-477 10.1007/s00248-008-9446-z 18825450
    • (2009) Microbial Ecology , vol.57 , pp. 469-477
    • Rudi, K.1
  • 20
    • 13244279471 scopus 로고    scopus 로고
    • Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns
    • 10.1186/1471-2105-5-90 487896 15239845
    • Reva ON Tummler B Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns BMC Bioinformatics 2004, 5:90 10.1186/1471-2105-5-90 487896 15239845
    • (2004) BMC Bioinformatics , vol.5 , pp. 90
    • Reva, O.N.1    Tummler, B.2
  • 21
    • 33644853927 scopus 로고    scopus 로고
    • Origin of replication in circular prokaryotic chromosomes
    • 10.1111/j.1462-2920.2005.00917.x 16423021
    • Worning P Jensen LJ Hallin PF Staerfeldt HH Ussery DW Origin of replication in circular prokaryotic chromosomes Environ Microbiol 2006, 8:353-361 10.1111/j.1462-2920.2005.00917.x 16423021
    • (2006) Environ Microbiol , vol.8 , pp. 353-361
    • Worning, P.1    Jensen, L.J.2    Hallin, P.F.3    Staerfeldt, H.H.4    Ussery, D.W.5
  • 22
    • 33845641375 scopus 로고    scopus 로고
    • GC content and genome length in Chargaff compliant genomes
    • 10.1016/j.bbrc.2006.12.008 17173863
    • Mitchell D GC content and genome length in Chargaff compliant genomes Biochem Biophys Res Commun 2007, 353:207-210 10.1016/j.bbrc.2006.12.008 17173863
    • (2007) Biochem Biophys Res Commun , vol.353 , pp. 207-210
    • Mitchell, D.1
  • 23
    • 34247568394 scopus 로고    scopus 로고
    • Efflux pumps as antimicrobial resistance mechanisms
    • 10.1080/07853890701195262 17457715
    • Poole K Efflux pumps as antimicrobial resistance mechanisms Annals of Medicine 2007, 39:162-176 10.1080/07853890701195262 17457715
    • (2007) Annals of Medicine , vol.39 , pp. 162-176
    • Poole, K.1
  • 25
    • 34250649276 scopus 로고    scopus 로고
    • Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem
    • 10.1094/MPMI-20-7-0731 17601161
    • Iyer-Pascuzzi AS McCouch SR Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem Molecular Plant-Microbe Interactions 2007, 20:731-739 10.1094/MPMI-20-7-0731 17601161
    • (2007) Molecular Plant-Microbe Interactions , vol.20 , pp. 731-739
    • Iyer-Pascuzzi, A.S.1    McCouch, S.R.2
  • 27
    • 0000724617 scopus 로고
    • Structure and function of nucleic acids as cell constituents
    • 14887699
    • Chargaff E Structure and function of nucleic acids as cell constituents Fed Proc 1951, 10:654-659 14887699
    • (1951) Fed Proc , vol.10 , pp. 654-659
    • Chargaff, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.