Contribution of arginine-glutamate salt bridges to helix stability

Journal of Molecular Modeling

Volumn 15, Issue 10, 2009, Pages 1213-1219

  Walker, Kristin D ^a   Causgrove, Timothy P ^a  

^a TEXAS A AND M UNIVERSITY CORPUS CHRISTI   (United States)

Author keywords

helix; Molecular dynamics; Peptide folding; Salt bridge interactions

Indexed keywords

ALANYLALANYLALANYLARGINYLALANYLALANYLALANYLALANYLGLUTAMYLALANYLALANYLGLUTAMYLALANYLALANYLALANYLALANYLARGINYLALANINE; ARGININE; GLUTAMIC ACID; PEPTIDE; UNCLASSIFIED DRUG;

ALPHA HELIX; AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; GEOMETRY; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; MOLECULAR MODEL; MOLECULAR STABILITY; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTON TRANSPORT; RESIDUE ANALYSIS; SURFACE CHARGE;

ARGININE; GLUTAMIC ACID; MOLECULAR DYNAMICS SIMULATION; PEPTIDES; PROTEIN STABILITY; PROTEIN STRUCTURE, SECONDARY; STATIC ELECTRICITY;

EID: 68949175013     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-009-0482-5     Document Type: Article

References (27)

1. Frauenfelder H, McMahon BH (2000) Ann Phys 9:655-667
2. Fenimore PW, Frauenfelder H, McMahon BH, Parak FG (2002) Proc Natl Acad Sci USA 99:16047-16501
3. Zimm BH, Bragg JK (1959) J Chem Phys 31:526-535
4. Lifson S, Roig A (1961) J Chem Phys 34:1963-1974
5. Schwarz G (1968) Biopolymers 6:873-897
6. Poland D, Scheraga HA (1966) J Chem Phys 45:2071-2090
7. Snow CD, Nguyen H, Pande VS, Gruebele M (2002) Nature 420:102-106
8. Gnanakaran S, Garcia AE (2003) J Phys Chem B 107:12555-12557
9. Sorin EJ, Pande VS (2005) Biophys J 88:2472-2493
10. Shoemaker KR, Kim PS, York EJ, Stewart JM, Baldwin RL (1987) Nature 326:563-567
11. Fairman R, Shoemaker KR, York EJ, Stewart JM, Baldwin RL (1990) Biophys Chem 37:107-119
12. Pozo Ramajo A, Petty SA, Volk M (2006) Chem Phys 323:11-20
13. Garcia AE, Sanbonmatsu KY (2002) Proc Natl Acad Sci USA 99:2782-2787
14. Bierzynski A, Kim PS, Baldwin RL (1982) Proc Natl Acad Sci USA 79:2470-2474
15. Wlodawer A, Svensson LA, Sjölin L, Gilliland GL (1988) Biochemistry 27:2705-2717
16. Rico M, Gallego E, Santoro J, Bermejo FJ, Nieto JL, Herranz J (1984) Biochem Biophys Res Commun 123:757-763
17. Ghosh T, Garde S, Garcia AE (2003) Biophys J 85:3187-3193
18. Wang WZ, Lin T, Sun YC (2007) J Phys Chem B 111:3508-3514
19. Okur A, Wickstrom L, Layten M, Geney R, Song K, Hornak V, Simmerling C (2006) J Chem Theory Comput 2:420-433
20. Sugita Y, Okamoto Y (2005) Biophys J 88:3180-3190
21. Monticelli L, Tieleman DP, Colombo G (2005) J Phys Chem B 109:20064-20067
22. Kalé L, Skeel R, Bhandarkar M, Brunner R, Gursoy A, Krawetz N, Phillips J, Shinozaki A, Varadarajan K, Schulten K (1999) J Comput Phys 151:283-312
23. Humphrey W, Dalke A, Schulten K (1996) J Mol Graphics 14:33-38
24. Feig M, Karanicolas J, Charles L, Brooks I (2004) J Mol Graphics Modell 22:377-395
25. Zhang W, Lei H, Chowdhury S, Duan Y (2004) J Phys Chem B 108:7479-7489
26. Williams S, Causgrove TP, Gilmanshin R, Fang KS, Callender RH, Woodruff WH, Dyer RB (1996) Biochemistry 35:691-697
27. Okur A, Wickstrom L, Simmerling C (2008) J Chem Theory Comput 4:488-498