메뉴 건너뛰기




Volumn 9, Issue 5, 2009, Pages 376-383

Allergen databases: Current status and perspectives

Author keywords

[No Author keywords available]

Indexed keywords

ALLERGEN;

EID: 68949163136     PISSN: 15297322     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11882-009-0055-9     Document Type: Review
Times cited : (128)

References (37)
  • 2
    • 60549087960 scopus 로고    scopus 로고
    • Incremental direct expenditure of treating asthma in the United States
    • Kamble S, Bharmal M: Incremental direct expenditure of treating asthma in the United States. J Asthma 2009, 46:73-80.
    • (2009) J Asthma , vol.46 , pp. 73-80
    • Kamble, S.1    Bharmal, M.2
  • 3
    • 1542510022 scopus 로고    scopus 로고
    • Allergic cross-reactivity: From gene to the clinic
    • Ferreira F, Hawranek T, Gruber P, et al.: Allergic cross-reactivity: from gene to the clinic. Allergy 2004, 59:243-267.
    • (2004) Allergy , vol.59 , pp. 243-267
    • Ferreira, F.1    Hawranek, T.2    Gruber, P.3
  • 4
    • 41449094497 scopus 로고    scopus 로고
    • Allergens are distributed into few protein families and possess a restricted number of biochemical functions
    • Radauer C, Bublin M, Wagner S, et al.: Allergens are distributed into few protein families and possess a restricted number of biochemical functions. J Allergy Clin Immunol 2008, 121:847-852.
    • (2008) J Allergy Clin Immunol , vol.121 , pp. 847-852
    • Radauer, C.1    Bublin, M.2    Wagner, S.3
  • 5
    • 67349179068 scopus 로고    scopus 로고
    • Scientific advancement of novel protein allergenicity evaluation: An overview of work from the HESI Protein Allergenicity Technical Committee (2000-2008)
    • Thomas K, Macintosh S, Bannon G, et al.: Scientific advancement of novel protein allergenicity evaluation: An overview of work from the HESI Protein Allergenicity Technical Committee (2000-2008). Food Chem Toxicol 2009, 47:1041-1050.
    • (2009) Food Chem Toxicol , vol.47 , pp. 1041-1050
    • Thomas, K.1    Macintosh, S.2    Bannon, G.3
  • 6
    • 13844299444 scopus 로고    scopus 로고
    • Bioinformatics data distribution and integration via Web Services and XML
    • Li X, Zhang Y: Bioinformatics data distribution and integration via Web Services and XML. Genomics Proteomics Bioinformatics 2003, 1:299-303.
    • (2003) Genomics Proteomics Bioinformatics , vol.1 , pp. 299-303
    • Li, X.1    Zhang, Y.2
  • 7
    • 58249114213 scopus 로고    scopus 로고
    • Approaches to risk assessment in food allergy: Report from a workshop "Developing a framework for assessing the risk from allergenic foods"
    • Madsen CB, Hattersley S, Buck J, et al.: Approaches to risk assessment in food allergy: Report from a workshop "Developing a framework for assessing the risk from allergenic foods." Food Chem Toxicol 2009, 47:480-489.
    • (2009) Food Chem Toxicol , vol.47 , pp. 480-489
    • Madsen, C.B.1    Hattersley, S.2    Buck, J.3
  • 8
    • 33748521231 scopus 로고    scopus 로고
    • Supporting the curation of biological databases with reusable text mining
    • Miotto O, Tan TW, Brusic V: Supporting the curation of biological databases with reusable text mining. Genome Inform 2005, 16:32-44.
    • (2005) Genome Inform , vol.16 , pp. 32-44
    • Miotto, O.1    Tan, T.W.2    Brusic, V.3
  • 9
    • 34248380799 scopus 로고    scopus 로고
    • Bioinformatics applied to allergy: Allergen databases, from collecting sequence information to data integration. The Allergome platform as a model
    • Mari A, Scala E, Palazzo P, et al.: Bioinformatics applied to allergy: allergen databases, from collecting sequence information to data integration. The Allergome platform as a model. Cell Immunol 2007, 244:97-100.
    • (2007) Cell Immunol , vol.244 , pp. 97-100
    • Mari, A.1    Scala, E.2    Palazzo, P.3
  • 10
    • 58149185138 scopus 로고    scopus 로고
    • Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009
    • Galperin MY, Cochrane GR: Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009. Nucleic Acids Res 2009, 37:D1-D4.
    • (2009) Nucleic Acids Res , vol.37
    • Galperin, M.Y.1    Cochrane, G.R.2
  • 15
    • 0032439959 scopus 로고    scopus 로고
    • Assessing the potential allergenicity of new food proteins
    • Gendel SM: Assessing the potential allergenicity of new food proteins. Food Biotechnol 1998, 12:175-185.
    • (1998) Food Biotechnol , vol.12 , pp. 175-185
    • Gendel, S.M.1
  • 16
    • 58149200954 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Sayers EW, Barrett T, Benson DA, et al.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2009, 37:5-15.
    • (2009) Nucleic Acids Res , vol.37 , pp. 5-15
    • Sayers, E.W.1    Barrett, T.2    Benson, D.A.3
  • 17
    • 0036673480 scopus 로고    scopus 로고
    • Bioinformatic methods for allergenicity assessment using a comprehensive allergen database
    • Hileman RE, Silvanovich A, Goodman RE, et al.: Bioinformatic methods for allergenicity assessment using a comprehensive allergen database. Int Arch Allergy Immunol 2002, 128:280-291.
    • (2002) Int Arch Allergy Immunol , vol.128 , pp. 280-291
    • Hileman, R.E.1    Silvanovich, A.2    Goodman, R.E.3
  • 18
    • 0037251966 scopus 로고    scopus 로고
    • SDAP: Database and computational tools for allergenic proteins
    • Dvanciuc O, Schein CH, Braun W: SDAP: database and computational tools for allergenic proteins. Nucleic Acids Res 2003, 31:359-362.
    • (2003) Nucleic Acids Res , vol.31 , pp. 359-362
    • Ivanciuc, O.1    Schein, C.H.2    Braun, W.3
  • 19
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, Gish W, Miller W, et al.: Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3
  • 20
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR, Lipman DJ: Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 1988, 85:2444-2448.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 21
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith TF, Waterman MS: Identification of common molecular subsequences. J Mol Biol 1981, 147:195-197.
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 22
    • 0029006770 scopus 로고
    • Comparison of methods for searching protein sequence databases
    • Pearson WR: Comparison of methods for searching protein sequence databases. Protein Sci 1995, 4:1145-1160.
    • (1995) Protein Sci , vol.4 , pp. 1145-1160
    • Pearson, W.R.1
  • 23
    • 33144474710 scopus 로고    scopus 로고
    • The value of short amino acid sequence matches for prediction of protein allergenicity
    • Silvanovich A, Nemeth MA, Song P, et al.: The value of short amino acid sequence matches for prediction of protein allergenicity. Toxicol Sci 2006, 90:252-258.
    • (2006) Toxicol Sci , vol.90 , pp. 252-258
    • Silvanovich, A.1    Nemeth, M.A.2    Song, P.3
  • 24
    • 0033836431 scopus 로고    scopus 로고
    • Structural biology of allergens
    • Aalberse RC: Structural biology of allergens. J Allergy Clin Immunol 2000, 106:228-238.
    • (2000) J Allergy Clin Immunol , vol.106 , pp. 228-238
    • Aalberse, R.C.1
  • 25
    • 0038380463 scopus 로고    scopus 로고
    • Allergenicity prediction by protein sequence
    • Stadler MB, Stadler BM: Allergenicity prediction by protein sequence. FASEB J 2003, 17:1141-1143.
    • (2003) FASEB J , vol.17 , pp. 1141-1143
    • Stadler, M.B.1    Stadler, B.M.2
  • 26
    • 33847636285 scopus 로고    scopus 로고
    • Allergen motifs and the prediction of allergenicity
    • Marti P, Truffer R, Stadler MB, et al.: Allergen motifs and the prediction of allergenicity. Immunol Lett 2007, 109:47-55.
    • (2007) Immunol Lett , vol.109 , pp. 47-55
    • Marti, P.1    Truffer, R.2    Stadler, M.B.3
  • 27
    • 68949113217 scopus 로고    scopus 로고
    • AllergomeBlaster: Auto-collecting new potential in silico allergens for the Allergome platform
    • Rasi C, Palazzo P, Carabella G, Mari A: AllergomeBlaster: Auto-collecting new potential in silico allergens for the Allergome platform. Allergy 2008, 63:S400.
    • (2008) Allergy , vol.63
    • Rasi, C.1    Palazzo, P.2    Carabella, G.3    Mari, A.4
  • 28
    • 0036515624 scopus 로고    scopus 로고
    • Microarrayed allergen molecules: Diagnostic gatekeepers for allergy treatment
    • Hiller R, Laffer S, Harwanegg C, et al.: Microarrayed allergen molecules: Diagnostic gatekeepers for allergy treatment. FASEB J 2002, 16:414-416.
    • (2002) FASEB J , vol.16 , pp. 414-416
    • Hiller, R.1    Laffer, S.2    Harwanegg, C.3
  • 29
    • 13444304325 scopus 로고    scopus 로고
    • NCBI GEO: Mining millions of expression profiles - Database and tools
    • BarrMtt T, Suzek TO, Troup DB, et al.: NCBI GEO: mining millions of expression profiles - database and tools. Nucleic Acids Res 2005, 33:D562-D566.
    • (2005) Nucleic Acids Res , vol.33
    • Barrett, T.1    Suzek, T.O.2    Troup, D.B.3
  • 30
    • 0037246058 scopus 로고    scopus 로고
    • ArrayExpress - A public repository for microarray gene expression data at the EBI
    • Brazma A, Parkinson H, Sarkans U, et al.: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 2003, 31:68-71.
    • (2003) Nucleic Acids Res , vol.31 , pp. 68-71
    • Brazma, A.1    Parkinson, H.2    Sarkans, U.3
  • 31
    • 0141976702 scopus 로고    scopus 로고
    • Global computing for bioinformatics
    • Loewe L: Global computing for bioinformatics. Brief Bioinform 2002, 3:377-388.
    • (2002) Brief Bioinform , vol.3 , pp. 377-388
    • Loewe, L.1
  • 32
    • 65549157113 scopus 로고    scopus 로고
    • ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization
    • Pappalardo F, Halling-Brown MD, Rapin N, et al.: ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Brief Bioinform 2009, 10:330-340.
    • (2009) Brief Bioinform , vol.10 , pp. 330-340
    • Pappalardo, F.1    Halling-Brown, M.D.2    Rapin, N.3
  • 34
    • 2942549190 scopus 로고    scopus 로고
    • PreBIND and Textomy - Mining the biomedical literature for protein-protein interactions using a support vector machine
    • Donaldson I, Martin J, de Bruijn B, et al.: PreBIND and Textomy - mining the biomedical literature for protein-protein interactions using a support vector machine. BMC Bioinformatics 2003, 4:11.
    • (2003) BMC Bioinformatics , vol.4 , pp. 11
    • Donaldson, I.1    Martin, J.2    de Bruijn, B.3
  • 35
    • 48449088232 scopus 로고    scopus 로고
    • PolySearch: A web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites
    • Cheng A, Knox C, Young N, et al.: PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Res 2008, 36:W399-W405.
    • (2008) Nucleic Acids Res , vol.36
    • Cheng, D.1    Knox, C.2    Young, N.3
  • 36
    • 33746763484 scopus 로고    scopus 로고
    • Building an allergens ontology and maintaining it using machine learning techniques
    • Valarakos AG, Karkaletsis V, Alexopoulou D, et al.: Building an allergens ontology and maintaining it using machine learning techniques. Comput Biol Med 2006, 36:1155-1184.
    • (2006) Comput Biol Med , vol.36 , pp. 1155-1184
    • Valarakos, A.G.1    Karkaletsis, V.2    Alexopoulou, D.3
  • 37
    • 68949122006 scopus 로고    scopus 로고
    • Allergen databases and allergen semantics
    • Dec 6 (Epub ahead of print)
    • Gendel SM: Allergen databases and allergen semantics. Regul Toxicol Pharmacol 2008 Dec 6 (Epub ahead of print).
    • (2008) Regul Toxicol Pharmacol
    • Gendel, S.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.