Comparative analysis of human coronavirus-NL63 ORF3 protein homologues

African Journal of Biotechnology

Volumn 8, Issue 14, 2009, Pages 3175-3178

  Fielding, Burtram C ^a   Suliman, Tasnim ^a  

^a UNIVERSITY OF THE WESTERN CAPE   (South Africa)

Author keywords

Accessory protein ORF3; Gene analysis; Human coronavirus; NL 63

Indexed keywords

MEMBRANE PROTEIN; PROTEIN ORF3; UNCLASSIFIED DRUG; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; COMPARATIVE STUDY; CORONAVIRUS; HUMAN; NUCLEOTIDE SEQUENCE; RESPIRATORY TRACT INFECTION; SEQUENCE HOMOLOGY; VIRUS INFECTION;

CORONAVIRUS; HUMAN CORONAVIRUS NL63;

EID: 68949162833     PISSN: None     EISSN: 16845315     Source Type: Journal    
DOI: None     Document Type: Article

References (25)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. Chiu SS, Chan KH, Chu KW, Kwan SW, Guan Y, Poon LLM, Peiris JSM (2005). Human Coronavirus NL63 Infection and Other Corona-virus Infections in Children Hospitalized with Acute Respiratory Disease in Hong Kong, China CID 2005: p. 40. (Pubitemid 40803500)
3. Debouck P, Pensaert M (1980). Experimental infection of pigs with a new porcine enteric coronavirus, CV 777, Am. J. Vet. Res. 41(2): 219-223
4. de Haan CA, Masters PS, Shen X, Weiss S, Rottier PJ (2002). The group-specific murine coronavirus genes are not essential, but their deletion, by reverse genetics, is attenuating in the natural host. Virol. 296: 177-189. (Pubitemid 34936777)
5. Dijkman R, Jebbink MF, Wilbrink B, Pyrc K, Zaaijer HL, Minor PD, Franklin S, Berkhout B, Thiel V, van der Hoek L (2006). Human coronavirus 229E encodes a single ORF4 protein between the spike and the envelope genes. Virol J. 3: p. 106. (Pubitemid 46178347)
6. Duarte M, Tobler K, Bridgen A, Rasschaert D, Ackermann M, Laude H (1994). Sequence analysis of the porcine epidemic diarrhea virus genome between the nucleocapsid and spike protein genes reveals a polymorphic ORF. Virol. 198: 466-476. (Pubitemid 124019483)
7. Ebihara T, Endo R, Ma X, Ishiguro N, Kikuta H (2005). Lack of association between New Haven coronavirus and Kawasaki disease. J. Infect. Dis. 192: 351-352.
8. Gorbalenya AE, Snijder EJ, Spaan WJ (2004). Severe acute respiratory syndrome coronavirus phylogeny: toward consensus. J. Virol. 78: 7863-7866. (Pubitemid 38944271)
9. Haijema BJ, Volders H, Rottier PJ (2004). Live, attenuated coronavirus vaccines through the directed deletion of group-specific genes provide protection against feline infectious peritonitis. J. Virol. 78: 3863-3871. (Pubitemid 38437192)
10. Holmes KV Lai MMC (1996). Coronaviridae: The viruses and their replication. In: Fields BN, Knipe DM, Howley PM (Editors). Fields Virology. Third. Philadelphia: Lippincott-Raven Publishers. pp. 1075-1093.
11. Krogh A, Larsson B, von Heijne G, Sonnhammer ELL (2001). Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol. 305(3): 567-580.
12. Kweon CH, Kwon BJ, Lee JG, Kwon GO, Kang YB (1999). Derivation of attenuated porcine epidemic diarrhea virus (PEDV) as vaccine candidate. Vaccine, (20-21): 2546-2553. Erratum in: Vaccine 1999 Aug 20, 18(1-2): p. 201.
13. McGoldrick A, Lowings JP, Paton DJ (1999). Characterisation of a recent virulent transmissible gastroenteritis virus from Britain with a deleted ORF 3a. Arch Virol. 144(4): 763-770. (Pubitemid 29218488)
14. Nicholas KB, Nicholas Jr HB, Deerfield DW (1997). GeneDoc: analysis and visualization of genetic variation. EMBNEW News, 4: 14.
15. Ontiveros E, Kuo L, Masters PS, Perlman S (2001). Inactivation of expression of gene 4 of mouse hepatitis virus strain JHM does not affect virulence in the murine CNS. Virol. 289: p. 230. (Pubitemid 33141003)
16. Ortego J, Escors D, Laude H, Enjuanes L (2002). Generation of a replication-competent, propagation-deficient virus vector based on the transmissible gastroenteritis coronavirus genome. J. Virol. 76: 11518-11529. (Pubitemid 35231308)
17. Park SJ, Moon HJ, Luo Y, Kim HK, Kim EM, Yang JS, Song DS, Kang BK, Lee CS, Park BK (2008). Cloning and further sequence analysis of the ORF3 gene of wild- and attenuated-type porcine epidemic diarrhea viruses. Virus Genes, 36(1): 95-104. (Pubitemid 351195185)
18. Pyrc K, Jebbink MF, Berkhout B, van der Hoek L (2004). Genome structure and transcriptional regulation of human coronavirus NL63. Virol. J. 1: 7. (Pubitemid 40412661)
19. Song DS, Yang JS, Oh JS, Han JH, Park BK (2003). Differentiation of a Vero cell adapted porcine epidemic diarrhea virus from Korean field strains by restriction fragment length polymorphism analysis of ORF 3. Vaccine, 21:1833-1842.
20. Thiel V, Herold J, Schelle B, Siddell SG (2001). Infectious RNA transcribed in vitro from a cDNA copy of the human coronavirus genome cloned in vaccinia virus. J. Gen. Virol. 82: 1273-1281. (Pubitemid 32536634)
21. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882. (Pubitemid 28022245)
22. van der Hoek L, Pyrc K, Jebbink MF, Vermeulen-Oost W, Berkhout RJ, Wolthers KC, Wertheim-van Dillen PM, Kaandorp J, Spaargaren J, Berkhout B (2004). Identification of a new human coronavirus. Nat. Med. 10(4): 368-373
23. van der Hoek L, Sure K, Ihorst G, Stang A, Pyrc K, Jebbink MF, Petersen G, Forster J, Berkhout B, Überla K (2005). Croup Is Asso-ciated with the Novel Coronavirus NL63. PLoS Med. 2(8): p. 764. (Pubitemid 46179248)
24. Vaughan EM, Halbur PG, Paul PS (1995). Sequence comparison of porcine respiratory coronavirus isolates reveals heterogeneity in the S, 3, and 3-1 genes. J. Virol. 69(5): 3176-3184.
25. Woods RD (2001). Efficacy of a transmissible gastroenteritis coronavirus with an altered ORF-3 gene. Can. J. Vet. Res. 65: 28-32.