Human coronavirus 229E encodes a single ORF4 protein between the spike and the envelope genes

Virology Journal

Volumn 3, Issue , 2006, Pages

  Dijkman, Ronald ^a   Jebbink, Maarten F ^a   Wilbrink, Berry ^b   Pyrc, Krzysztof ^a   Zaaijer, Hans L ^a   Minor, Philip D ^c   Franklin, Sally ^c   Berkhout, Ben ^a   Thiel, Volker ^d   Van Der Hoek, Lia ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^c NATIONAL INSTITUTE FOR BIOLOGICAL STANDARDS AND CONTROL   (United Kingdom)

^d CANTONAL HOSPITAL ST GALLEN   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN ORF4A; PROTEIN ORF4B; UNCLASSIFIED DRUG; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; CORONAVIRUS; ENVELOPE GENE; GENE DELETION; GENETIC ORGANIZATION; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY; VIRAL GENETICS; VIRUS CULTURE; VIRUS GENE; VIRUS ISOLATION; VIRUS STRAIN;

AGED; AGED, 80 AND OVER; AMINO ACID SEQUENCE; CHROMOSOME MAPPING; CORONAVIRUS 229E, HUMAN; HUMANS; MEMBRANE GLYCOPROTEINS; MIDDLE AGED; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VIRAL ENVELOPE PROTEINS; VIRAL PROTEINS;

CORONAVIRUS; HUMAN CORONAVIRUS 229E;

EID: 33846587095     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-3-106     Document Type: Article

References (26)

1. Holmes KV, Lai MMC: Coronaviridae: The viruses and their replication. In Fields Virology Third edition. Edited by: Fields BN, Knipe DM, Howley PM, et al. Philadelphia: Lippincott-Raven Publishers; 1996:1075-1093.
2. de Haan CA, Masters PS, Shen X, Weiss S, Rottier PJ: The group-specific murine coronavirus genes are not essential, but their deletion, by reverse genetics, is attenuating in the natural host. Virol 2002, 296:177-189.
3. Herrewegh AA, Vennema H, Horzinek MC, Rottier PJ, de Groot RJ: The molecular genetics of feline coronaviruses: comparative sequence analysis of the ORF7a/7b transcription unit of different biotypes. Virol 1995, 212:622-631.
4. Haijema BJ, Volders H, Rottier PJ: Live, attenuated coronavirus vaccines through the directed deletion of group-specific genes provide protection against feline infectious peritonitis. J Virol 2004, 78:3863-3871.
5. Gorbalenya AE, Snijder EJ, Spaan WJ: Severe acute respiratory syndrome coronavirus phylogeny: toward consensus. J Virol 2004, 78:7863-7866.
6. Thiel V, Herold J, Schelle B, Siddell SG: Infectious RNA transcribed in vitro from a cDNA copy of the human coronavirus genome cloned in vaccinia virus. J Gen Virol 2001, 82:1273-1281.
7. Song DS, Yang JS, Oh JS, Han JH, Park BK: Differentiation of a Vero cell adapted porcine epidemic diarrhea virus from Korean field strains by restriction fragment length polymorphism analysis of ORF 3. Vaccine 2003, 21:1833-1842.
8. Woods RD: Efficacy of a transmissible gastroenteritis coronavirus with an altered ORF-3 gene. Can J Vet Res 2001, 65:28-32.
9. Duarte M, Tobler K, Bridgen A, Rasschaert D, Ackermann M, Laude H: Sequence analysis of the porcine epidemic diarrhea virus genome between the nucleocapsid and spike protein genes reveals a polymorphic ORF. Virol 1994, 198:466-476.
10. Raabe T, Siddell S: Nucleotide sequence of the human coronavirus HCV 229E mRNA 4 and mRNA 5 unique regions. Nucleic Acids Res 1989, 17:6387.
11. Hamre D, Procknow JJ: A new virus isolated from the human respiratory tract. Proc Soc Exp Biol Med 1966, 121:190-193.
12. Bradburne AF, Bynoe ML, Tyrrell DA: Effects of a "new" human respiratory virus in volunteers. Br Med J 1967, 3:767-769.
13. Tyrrell DA, Bynoe ML, Hoorn B: Cultivation of "difficult" viruses from patients with common colds. Br Med J 1968, 1:606-610.
14. Myint S, Harmsen D, Raabe T, Siddell SG: Characterization of a nucleic acid probe for the diagnosis of human coronavirus 229E infections. J Med Virol 1990, 31:165-172.
15. Thiel V, Siddell SG: Internal ribosome entry in the coding region of murine hepatitis virus mRNA 5. J Gen Virol 1994, 75(Pt 11):3041-3046.
16. Liu DX, Inglis SC: Internal entry of ribosomes on a tricistronic mRNA encoded by infectious bronchitis virus. J Virol 1992, 66:6143-6154.
17. Wentworth DE, Tresnan DB, Turner BC, Lerman IR, Bullis B, Hemmila EM, Levis R, Shapiro LH, Holmes KV: Cells of human aminopeptidase N (CD13) transgenic mice are infected by human coronavirus-229E in vitro, but not in vivo. Virol 2005, 335:185-197.
18. Lassnig C, Sanchez CM, Egerbacher M, Walter I, Majer S, Kolbe T, Pallares P, Enjuanes L, Muller M: Development of a transgenic mouse model susceptible to human coronavirus 229E. Proc Natl Acad Sci USA 2005, 102:8275-8280.
19. Chibo D, Birch C: Analysis of human coronavirus 229E spike and nucleoprotein genes demonstrates genetic drift between chronologically distinct strains. J Gen Virol 2006, 87:1203-1208.
20. Vijgen L, Keyaerts E, Moes E, Thoelen I, Wollants E, Lemey P, Vandamme AM, Van Ranst M: Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event. J Virol 2005, 79:1595-1604.
21. Sanchez CM, Gebauer F, Sune C, Mendez A, Dopazo J, Enjuanes L: Genetic evolution and tropism of transmissible gastroenteritis coronaviruses. Virol 1992, 190:92-105.
22. Pyrc K, Dijkman R, Deng L, Jebbink MF, Berkhout B, van der Hoek L: Mosaic structure of human coronavirus NL63, one thousand years of evolution. J Mol Biol 2006, 364:964-73.
23. Tang XC, Zhang JX, Zhang SY, Wang P, Fan XH, Li LF, Li G, Dong BQ, Liu W, Cheung CL, et al.: Prevalence and genetic diversity of coronaviruses in bats from China. J Virol 2006, 80:7481-7490.
24. Boom R, Sol CJ, Salimans MM, Jansen CL, Wertheim-van Dillen PM, van der NJ: Rapid and simple method for purification of nucleic acids. J Clin Microbiol 1990, 28:495-503.
25. Pyrc K, Bosch BJ, Berkhout B, Jebbink MF, Dijkman R, Rottier P, van der Hoek L: Inhibition of HCoV-NL63 infection at early stages of the replication cycle. Antim Ag Chemoth 2006, 50:2000-2008.
26. Kumar S, Tamura K, Nei M: MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Comput Appl Biosci 1994, 10:189-191.