Phylogeny of subfamily Epidendroideae (Orchidaceae) inferred from ndhF chloroplast gene sequences

American Journal of Botany

Volumn 83, Issue 9, 1996, Pages 1195-1206

  Neyland, Ray ^a   Urbatsch, Lowell E ^b  

^a MCNEESE STATE UNIVERSITY   (United States)

^b LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

cladistics; Epidendroideae; ndhF; orchidaceae; phylogenetics; systemat ics

Indexed keywords

EID: 0029915536     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.2307/2446204     Document Type: Article

References (37)

1. BALDWIN, B. G. 1993. Molecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: chromosomal and morphological evolution reexamined. American Journal of Botany 80: 222-238.
2. BAUM, D. A., AND K. J. SYTSMA. 1994. A phylogenetic analysis of Epilobium (Onagraceae) based on nuclear ribosomal DNA sequences. Systematic Botany 19: 363-388.
3. BENZING, D. H. 1987. Major patterns and processes in orchid evolution: a critical synthesis. In J. Arditti [ed.], Orchid biology: reviews and perspectives, vol. IV, 34-77. Comstock, Ithaca, NY.
4. BURNS-BALOGH, P., AND V. A. FUNK. 1886. A phylogenetic analysis of the Orchidaceae. Smithsonian Contributions to Botany 61: 1-79.
5. CLEGG, M. T., AND G. ZURAWSKI. 1992. Chloroplast DNA and the study of plant phylogeny: present status and future prospects. In P. S. Soltis, D. E. Soltis, and J. J. Doyle [eds.], Molecular systematics of plants, 1-13. Chapman and Hall, New York, NY.
6. DOYLE, J. J., AND J. L. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
7. DRESSLER, R.L. 1981. The Orchids: natural history and classification. Harvard University Press, Cambridge, MA.
8. _. 1989. The vandoid orchids: a polyphyletic grade? Lindleyana 4: 89-93.
9. _. 1990. The major clades of the Orchidaceae-Epidendroideae. Lindleyana 5: 117-125.
10. _. 1993. Phylogeny and classification of the orchid family. Dioscorides Press, Portland, OR.
11. _, AND C. H. DODSON. 1960. Classification and phylogeny in the Orchidaceae. Annals of the Missouri Botanical Garden 47: 25-68.
12. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39: 783-791.
13. _. 1993. Some available phylogeny programs (long). 9304222230.AA27807@evolution.genetics.washington.edu.
14. GARAY, L. A. 1960. On the origin of the Orchidaceae. Botanical Museum Leaflets 19: 57-95.
15. HIBBETT, D. S., AND R. VILGALYS. 1993. Phylogenetic relationships of Lentinus (Basidiomycotina) inferred from molecular and morphological characters. Systematic Botany 18: 409-433.
16. HIRATSUKA, J., S. HIROAKI, R. WHITTIER, T. ISHIBASHI, M SAKAMOTO, M. MORI, C. KONDO, Y. HONJI, C. SUN, B. MENG, Y. LI, A. KANNO, Y. NISHIZAWA, A. HIRAI, K. SHINOZAKI, AND M. SUGIURA. 1989. The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals. Molecular and General Genetics 217: 185-194.
17. JANSEN, R. K. 1992. Current research. Plant Molecular Evolution Newsletter 2: 13-14
18. KURZWEIL, H. 1987 Developmental studies in orchid flowers. I. Epidendroid and vandoid species. Nordic Journal of Botany 7: 427-442.
19. LLOYD, D. G., AND V. L. CALDER. 1991. Multi-residue gaps, a class of molecular characters with exceptional reliability for phylogenetic analyses. Journal of Evolutionary Biology 4: 9-21.
20. MADDISON, W. P, AND D. R. MADDISON. 1992. MacClade: analysis of phylogeny and character evolution, version 3.0. Sinauer, Sunderland, MA.
21. MULLIS, K. B., AND F. A. FALLONA. 1987. Specific synthesis of DNA in vitro via a polymerase chain reaction. Methods in Enzymology 155: 335-350.
22. OHYAMA, K., H. FUKUZAWA, T. KOHCHI, H. SANYO, T. SANO, S. SANO, K. UMESONO, Y. SHIKI, M. TAKEUCHI, Z. CHANG, S. AOTA, H. INOKUCHI, AND H. OZEKI. 1986. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322: 572-574.
23. OLMSTEAD, R. G., AND J. D PALMER. 1994. Chloroplast DNA systematics: a review of methods and data analysis. American Journal of Botany 81: 1205-1224.
24. _, AND J. A. SWEERE. 1994. Combining data in phylogenetic systematics: an emperical approach using three molecular data sets in the Solanaceae. Systematic Biology 43: 467-481.
25. _, _, AND K. H. WOLFE. 1993. Ninety extra nucleotides in ndhF gene of tobacco chloroplast DNA: a summary of revisions to the 1986 genome sequence. Plant Molecular Biology 22: 1191-1193.
26. OLSEN, G. J., H. MATSUDA, R. HAGSTROM, AND R. OVERBEEK. 1994. fastDNAml, version 1.0. University of Illinois, Urbana, IL.
27. PALMER, J. D., R. K. JANSEN, H. J. MICHAELS, M. W. CHASE, AND J. R. MANHART. 1988. Chloroplast DNA variation and plant phylogeny. Annals of the Missouri Botanical Garden 75: 1180-1206.
28. PRIDGEON, A. M. 1987. The velamen and exodermis of orchid roots. In J. Arditti [ed.], Orchid biology: reviews and perspectives, vol. IV, 140-192. Comstock, Ithaca, NY.
29. RASMUSSEN, F. N. 1985. Orchids. In R. M. T. Dahlgren, H. T. Clifford, and P. F. Yeo [eds.], The families of the monocotyledons; structure, evolution, and taxonomy. Springer-Verlag, Berlin.
30. RIVERA, M. C., AND J. A. LAKE. 1992. Evidence that eukaryotes and eocyte prokaryotes are immediate relatives. Science 257: 74-76.
31. SAIKI, R. K., D. H. GELFAND, S. STOFFEL, S. J. SCHARF, R. HUIGUCHI, G. T. HORN, K. B. MULLIS, AND H. A. ERLICH. 1988. Primer-directed enzymatic amplification of DNA with thermostable DNA polymerase. Science 239: 487-491.
32. SANDERSON, M. J. 1989. Confidence limits on phylogenies. Cladistics. 5: 113-129.
33. SWOFFORD, D. L. 1993. Phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey, Champaign, IL.
34. _, AND D. P. BEAGLE. 1993. Phylogenetic analysis using parsimony. Illinois Natural History Survey, Champaign, IL.
35. TAIZ, L., AND E. ZEIGER. 1991. Plant physiology. Benjamin/Cummings, Red Wood City, CA.
36. WAKASUGI, T. J., TSUDZUKI, S. ITO, K. NAKASHIMA, T. TSUDZUKI, AND M. SUGIURA. 1994. Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine, Pinus thunbergii. 1994. Proceedings of the National Academy of Sciences, USA 91: 9794-9798.
37. ZURAWSKI, G., AND M. T. CLEGG. 1987. Evolution of higher-plant chloroplast DNA-encoded genes: implications for structure-function and phylogenetic studies. Annual Review of Plant Physiology 38: 391-418.