Arsenophonus, an emerging clade of intracellular symbionts with a broad host distribution

BMC Microbiology

Volumn 9, Issue , 2009, Pages

  Nováková, Eva ^a   Hypša, Václav ^a   Moran, Nancy A ^b  

^a UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

^b University of Arizona   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; BACTERIAL DNA; RNA 16S;

ARTICLE; CLADISTICS; FLY; GENETIC VARIABILITY; HIPPOBOSCIDAE; MICROBIAL DIVERSITY; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; NYCTERIBIIDAE; PHYLOGENY; SYMBIONT; SYNAPOMORPHY; ANIMAL; BACTERIAL GENE; CLASSIFICATION; DNA SEQUENCE; ENTEROBACTERIACEAE; GENETICS; MICROBIOLOGY; MOLECULAR EVOLUTION; SEQUENCE ALIGNMENT; SYMBIOSIS;

ARSENOPHONUS; CANDIDATUS PHLOMOBACTER; DIPTERA; HEXAPODA; HIPPOBOSCIDAE; NYCTERIBIIDAE;

ANIMALS; DIPTERA; DNA, BACTERIAL; ENTEROBACTERIACEAE; EVOLUTION, MOLECULAR; GENES, BACTERIAL; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SYMBIOSIS;

EID: 68849085143     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-143     Document Type: Article

References (75)

1. Bacterial infections associated with the son-killer trait in the parasitoid wasp, Nasonia (= Mormoniella) vitripennis (Hymenoptera, Pteromalidae). AM Huger SW Skinner JH Werren, J Invertebr Pathol 1985 46 272 280 10.1016/0022-2011(85)90069-2 4067323
2. Son-killer - A 3rd extrachromosomal factor affecting the sex-ratio in the parasitoid wasp, Nasonia (= Mormoniella) vitripennis. SW Skinner, Nasonia 1985 109 745 759
3. Male-killing bacteria in a parasitic wasp. JH Werren SW Skinner AM Huger, Science 1986 231 990 992 10.1126/science.3945814 3945814
4. Arsenophonus nasoniae gen. nov., sp. nov., the causative agent of the son-killer trait in the parasitic wasp Nasonia vitripennis. RL Gherna JH Werren W Weisburg R Cote CR Woese L Mandelco DJ Brenner, Int J Syst Bacteriol 1991 41 563 565
5. Endocytobionts of Triatoma infestans : distribution and transmission. V Hypša, J Invertebr Pathol 1993 61 32 38 10.1006/jipa.1993.1006
6. Mise en évidence et étude ultrastructurale de procaryotes de type rickettsien dans les glandes salivaires des Triatomidae (Heteroptera) = Evidence and ultrastructural study of Rickettsia-like prokaryotes in salivary glands of Triatomidae (Heteroptera). C Louis L Drif C Vago, Ann Soc Entomol Fr 1986 22 153 162
7. In vitro culture and phylogenetic analysis of "Candidatus Arsenophonus triatominarum, " an intracellular bacterium from the triatomine bug, Triatoma infestans. V Hypša C Dale, Int J Syst Bacteriol 1997 47 1140 1144 9336921
8. Phylogenetic characterization of the bacterium-like organism associated with marginal chlorosis of strawberry and proposition of a Candidatus taxon for the organism, 'Candidatus Phlomobacter fragariae '. L Zreik JM Bove M Garnier, Int J Syst Bacteriol 1998 48 257 261 9542095
9. Psyllid endosymbionts exhibit patterns of co-speciation with hosts and destabilizing substitutions in ribosomal RNA. AW Spaulding CD von Dohlen, Insect Mol Biol 2001 10 57 67 10.1046/j.1365-2583.2001.00231.x 11240637
10. Complex endosymbiotic microbiota of the citrus psyllid Diaphorina citri (Homoptera: Psylloidea). S Subandiyah N Nikoh S Tsuyumu S Somowiyarjo T Fukatsu, Zool Science 2000 17 983 989 10.2108/zsj.17.983
11. Cospeciation of psyllids and their primary prokaryotic endosymbionts. ML Thao NA Moran P Abbot EB Brennan DH Burckhardt P Baumann, App Environ Microbiol 2000 66 2898 2905 10.1128/AEM.66.7.2898-2905.2000
12. Identification of Arsenophonus-type bacteria from the dog tick Dermacentor variabilis. N Grindle JJ Tyner K Clay C Fuqua, J Invertebr Pathol 2003 83 264 266 10.1016/S0022-2011(03)00080-6 12877836
13. Side-stepping secondary symbionts: widespread horizontal transfer across and beyond the Aphidoidea. JA Russell A Latorre B Sabater-Munoz A Moya NA Moran, Mol Ecol 2003 12 1061 1075 10.1046/j.1365-294X.2003.01780.x 12753224
14. Diversity of prokaryotes associated with Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae). E Zchori-Fein JK Brown, Ann Entomol Soc Am 2002 95 711 718 10.1603/0013-8746(2002)095[0711:DOPAWB]2.0.CO;2
15. Evidence for multiple acquisition of Arsenophonus by whitefly species (Sternorrhyncha: Aleyrodidae). MLL Thao P Baumann, Curr Microbiol 2004 48 140 144 10.1007/s00284-003-4157-7 15057483
16. Isolation, pure culture, and characterization of "Candidatus Arsenophonus arthropodicus, " an intracellular secondary endosymbiont from the hippoboscid louse fly Pseudolynchia canariensis. C Dale M Beeton C Harbison T Jones M Pontes, App Environ Microbiol 2006 72 2997 3004 10.1128/AEM.72.4.2997- 3004.2006
17. Culture-independent characterization of the microbiota of the ant lion Myrmeleon mobilis (Neuroptera: Myrmeleontidae). AK Dunn EV Stabb, App Environ Microbiol 2005 71 8784 8794 10.1128/AEM.71.12.8784-8794.2005
18. Evolutionary relationships of "Candidatus Riesia spp.," endosymbiotic Enterobacteriaceae living within hematophagous primate lice. JM Allen DL Reed MA Perotti HR Braig, App Environ Microbiol 2007 73 1659 1664 10.1128/AEM.01877-06
19. Bacterial community structures in honeybee intestines and their response to two insecticidal proteins. D Babendreier D Joller J Romeis F Bigler F Widmer, Fems Microbiol Ecol 2007 59 600 610 10.1111/j.1574-6941.2006.00249.x 17381517
20. Identification and phylogenetic analysis of Arsenophonus- and Photorhabdus-type bacteria from adult Hippoboscidae and Streblidae (Hippoboscoidea). RE Trowbridge K Dittmar MF Whiting, J Invertebr Pathol 2006 91 64 68 10.1016/j.jip.2005.08.009 16289111
21. Frequency of secondary symbiont infection in an invasive psyllid relates to parasitism pressure on a geographic scale in California. AK Hansen G Jeong TD Paine R Stouthamer, App Environ Microbiol 2007 73 7531 7535 10.1128/AEM.01672-07
22. Characterization of a gamma-3 proteobacteria responsible for the syndrome "basses richesses" of sugar beet transmitted by Pentastiridius sp. (Hemiptera, Cixiidae). O Semetey F Gatineau A Bressan E Boudon-Padieu, Phytopathology 2007 97 72 78 10.1094/PHYTO-97-0072 18942939
23. An effect of 16S rRNA intercistronic variability on coevolutionary analysis in symbiotic bacteria: molecular phylogeny of Arsenophonus triatominarum. P Šorfová A Škeříková V Hypša, Syst and App Microbiol 2008 31 88 100 10.1016/j.syapm.2008.02.004
24. Host-symbiont interactions of the primary endosymbiont of human head and body lice. MA Perotti JM Allen DL Reed HR Braig, Faseb Journal 2007 21 1058 1066 10.1096/fj.06-6808com 17227954
25. Symbiotic bacteria associated with stomach discs of human lice. K Sasaki-Fukatsu R Koga N Nikoh K Yoshizawa S Kasai M Mihara M Kobayashi T Tomita T Fukatsu, App Environ Microbiol 2006 72 7349 7352 10.1128/AEM.01429-06
26. Bacterial endosymbiont of the slender pigeon louse, Columbicola columbae, allied to endosymbionts of grain weevils and tsetse flies. T Fukatsu R Koga WA Smith K Tanaka N Nikoh K Sasaki-Fukatsu K Yoshizawa C Dale DH Clayton, Appl Environ Microbiol 2007 73 6660 6668 17766458 10.1128/AEM.01131-07
27. Nonhomogeneous model of sequence evolution indicates independent origins of primary endosymbionts within the enterobacteriales (gamma-proteobacteria). JT Herbeck PH Degnan JJ Wernegreen, Mol Biol Evol 2005 22 520 532 10.1093/molbev/msi036 15525700
28. Biology of bacteriocyte-associated endosymbionts of plant sap-sucking insects. P Baumann, Annu Rev Microbiol 2005 59 155 189 10.1146/annurev.micro.59. 030804.121041 16153167
29. Endosymbiont phylogenesis in the Dryophthoridae weevils: Evidence for bacterial replacement. C Lefevre H Charles A Vallier B Delobel B Farrell A Heddi, Mol Biol Evol 2004 21 965 973 10.1093/molbev/msh063 14739242
30. Molecular characterization of the principal symbiotic bacteria of the weevil Sitophilus oryzae : A peculiar G+C content of an endocytobiotic DNA. A Heddi H Charles C Khatchadourian G Bonnot P Nardon, J Mol Evol 1998 47 52 61 10.1007/PL00006362 9664696
31. Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. N Galtier M Gouy, Mol Biol Evol 1998 15 871 879 9656487
32. Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases. K Tamura, Mol Biol Evol 1992 9 678 687 1630306
33. A review of long-branch attraction. J Bergsten, Cladistics 2005 21 163 193 10.1111/j.1096-0031.2005.00059.x
34. Molecular evidence for polyphyletic origin of the primary symbionts of sucking lice (Phthiraptera, Anoplura). V Hypša J Kří žek, Microb Ecology 2007 54 242 251 10.1007/s00248-006-9194-x
35. Molecular phylogenetic analysis of nycteribiid and streblid bat flies (Diptera: Brachycera, Calyptratae): Implications for host associations and phylogeographic origins. K Dittmar ML Porter S Murray MF Whiting, Mol Phyl Evol 2006 38 155 170 10.1016/j.ympev.2005.06.008
36. Independent origins and horizontal transfer of bacterial symbionts of aphids. JP Sandstrom JA Russell JP White NA Moran, Mol Ecol 2001 10 217 228 10.1046/j.1365-294X.2001.01189.x 11251800
37. Co-cladogenesis spanning three phyla: leafhoppers (Insecta: Hemiptera: Cicadellidae) and their dual bacterial symbionts. DM Takiya PL Tran CH Dietrich NA Moran, Mol Ecol 2006 15 4175 4191 10.1111/j.1365-294X.2006.03071.x 17054511
38. Secondary (gamma-Proteobacteria) endosymbionts infect the primary (beta-Proteobacteria) endosymbionts of mealybugs multiple times and coevolve with their hosts. ML Thao PJ Gullan P Baumann, App Environ Microbiol 2002 68 3190 3197 10.1128/AEM.68.7.3190-3197.2002
39. Biology of Wolbachia. JH Werren, Annu Rev Entomol 1997 42 587 609 10.1146/annurev.ento.42.1.587 15012323
40. Horizontal transfer of Wolbachia between phylogenetically distant insect species by a naturally occurring mechanism. BD Heath RDJ Butcher WGF Whitfield SF Hubbard, Curr Biol 1999 9 313 316 10.1016/S0960-9822(99)80139-0 10209097
41. Horizontal transfer of bacterial symbionts: Heritability and fitness effects in a novel aphid host. JA Russell NA Moran, App Environ Microbiol 2005 71 7987 7994 10.1128/AEM.71.12.7987-7994.2005
42. Sequence heterogeneity between the 2 genes encoding 16S ribosomal-RNA from the halophilic archeabacterium Haloarcula marismortui. S Mylvaganam PP Dennis, Genetics 1992 130 399 410 1372578
43. The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. Y Wang ZS Zwang N Ramanan, J Bacteriol 1997 179 3270 3276 9150223
44. Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial cyanobacterial small-subunit rRNA gene. SR Miller A Sunny TL Olson RE Blankenship J Selker M Wood, Proc Natl Acad Sci USA 2005 102 850 855 15637160 10.1073/pnas.0405667102
45. Comparative sequence analyses reveal frequent occurrence of short segments containing an abnormally high number of non-random base variations in bacterial rRNA genes. Y Wang ZS Zhang, Microbiology-Sgm 2000 146 2845 2854
46. Prokaryotic evolution in light of gene transfer. JP Gogarten WF Doolittle JG Lawrence, Mol Biol Evol 2002 19 2226 2238 12446813
47. The sequence heterogenicities among 16S rRNA genes of Salmonella serovars and the effects on the specificity of the primers designed. CK Lin CL Hung YC Chiang CM Lin HY Tsen, Int J Food Microbiol 2004 96 205 214 10.1016/j. ijfoodmicro.2004.03.027 15364475
48. Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veillonella: implications for phylogeny and taxonomy. H Marchandin C Teyssier MS de Buochberg H Jean-Pierre C Carriere E Jumas-Bilak, Microbiology-Sgm 2003 149 1493 1501 10.1099/mic.0.26132-0
49. Molecular evolution of Mycoplasma capricolum subsp. capripneumoniae strains, based on polymorphisms in the 16S rRNA genes. B Pettersson G Bolske F Thiaucourt M Uhlen KE Johansson, J Bacteriol 1998 180 2350 2358 9573185
50. Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon. WH Yap ZS Zhang Y Wang, J Bacteriol 1999 181 5201 5209 10464188
51. Intragenomic variation and evolution of the internal transcribed spacer of the rRNA operon in bacteria. FJ Stewart CM Cavanaugh, J Mol Evol 2007 65 44 67 10.1007/s00239-006-0235-3 17568983
52. Evolutionary relationships of primary prokaryotic endosymbionts of whiteflies and their hosts. ML Thao P Baumann, App Environ Microbiol 2004 70 3401 3406 10.1128/AEM.70.6.3401-3406.2004
53. Loss of DNA recombinational repair enzymes in the initial stages of genome degeneration. C Dale B Wang N Moran H Ochman, Mol Biol Evol 2003 20 1188 1194 10.1093/molbev/msg138 12777518
54. A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. FU Battistuzzi A Feijao SB Hedges, Bmc Evol Biol 2004 4 14 15171796 10.1186/1471-2148-4-44
55. Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes. H Ochman AC Wilson, J Mol Evol 1987 26 74 86 10.1007/BF02111283 3125340
56. Bayesian molecular dating using PAML/multidivtime. A step-by-step manual. F Rutschmann, University of Zurich, Switzerland 2005 http://www.plant.ch
57. An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks. MW Gaunt MA Miles, Mol Biol Evol 2002 19 748 761 11961108
58. Lifestyle evolution in symbiotic bacteria: insights from genomics. NA Moran JJ Wernegreen, Trends Ecol Evol 2000 15 321 326 10.1016/S0169-5347(00) 01902-9 10884696
59. Type III secretion systems and the evolution of mutualistic endosymbiosis. C Dale GR Plague B Wang H Ochman NA Moran, Proc Natl Acad Sci USA 2002 99 12397 12402 12213957 10.1073/pnas.182213299
60. Host-symbiont stability and fast evolutionary rates in an ant-bacterium association: Cospeciation of Camponotus species and their endosymbionts, Candidatus Blochmannia. PH Degnan AB Lazarus CD Brock JJ Wernegreen, Syst Biol 2004 53 95 110 10.1080/10635150490264842 14965905
61. Symbiosis and insect diversification: An ancient symbiont of sap-feeding insects from the bacterial phylum Bacteroidetes. NA Moran P Tran NM Gerardo, App Environ Microbiol 2005 71 8802 8810 10.1128/AEM.71.12.8802-8810.2005
62. Cospeciation between bacterial endosymbionts (Buchnera) and a recent radiation of aphids (Uroleucon) and pitfalls of testing for phylogenetic congruence. MA Clark NA Moran P Baumann JJ Wernegreen, Evolution 2000 54 517 525 10937228
63. Absence of Wolbachia in nonfilariid worms parasitizing arthropods. O Duron L Gavotte, Curr Microbiol 2007 55 193 197 10.1007/s00284-006-0578-4 17657540
64. Mutational meltdown in primary endosymbionts: selection limits Muller's ratchet. JM Allen JE Light MA Perotti HR Braig DL Reed, PLoS One 2009 4 3 e4969 19305500 10.1371/journal.pone.0004969
65. The diversity of reproductive parasites among arthropods: Wolbachia do not walk alone. O Duron D Bouchon S Boutin L Bellamy L Zhou J Engelstadter GD Hurst, BMC Biol 2008 6 1 27 18577218 10.1186/1741-7007-6-27
66. Revisiting Wolbachia supergroup typing based on WSP: Spurious lineages and discordance with MLST. L Baldo JH Werren, Curr Microbiol 2007 55 81 87 10.1007/s00284-007-0055-8 17551786
67. Phylogeny of Wolbachia pipientis based on gltA, groEL and ftsZ gene sequences: clustering of arthropod and nematode symbionts in the F supergroup, and evidence for further diversity in the Wolbachia tree. M Casiraghi SR Bordenstein L Baldo N Lo T Beninati JJ Wernegreen JH Werren C Bandi, Microbiology-Sgm 2005 151 4015 4022 10.1099/mic.0.28313-0
68. Arsenophonus. JH Werren, Bergey's Manual of Systematic Bacteriology New York: Springer-Verlag, Garrity GM, 2004 2
69. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nuc Acid Symp Series 1999 41 95 98
70. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. J Castresana, Mol Biol Evol 2000 17 540 552 10742046
71. MODELTEST: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 817 818 10.1093/bioinformatics/14.9.817 9918953
72. TNT. PA Goloboff JS Farris KC Nixon, Cladistics-the International Journal of the Willi Hennig Society 2004 20 84 84
73. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136
74. SEAVIEW and PHYLO-WIN: Two graphic tools for sequence alignment and molecular phylogeny. N Galtier M Gouy C Gautier, Comput Appl Biosci 1996 12 543 548 9021275
75. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. AJ Drummond GK Nicholls AG Rodrigo W Solomon, Genetics 2002 161 1307 1320 12136032