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Volumn 122, Issue 3, 2009, Pages 355-361

Isolation and characteristics of eight novel polymorphic microsatellite loci from the genome of garlic (Allium sativum L.)

Author keywords

Allium sativum L.; Garlic; Genetic diversity; SSRs

Indexed keywords

BIODIVERSITY; BIOMARKER; GENETIC VARIATION; GENOME; GENOTYPE; POLYMORPHISM; POPULATION STRUCTURE; REPRODUCTIVE ISOLATION; VEGETABLE;

EID: 68749087049     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2009.06.010     Document Type: Article
Times cited : (64)

References (44)
  • 1
    • 33947323124 scopus 로고    scopus 로고
    • Association mapping of yield and its components in rice cultivars
    • Agrama H.A., Eizenga G.C., and Yan W. Association mapping of yield and its components in rice cultivars. Mol. Breed. 19 (2007) 341-356
    • (2007) Mol. Breed. , vol.19 , pp. 341-356
    • Agrama, H.A.1    Eizenga, G.C.2    Yan, W.3
  • 2
    • 0030882197 scopus 로고    scopus 로고
    • Classification of genetic variation in garlic (Allium sativum L.) revealed by RAPD
    • Al-Zahim M., Newbury H.J., and Ford-Lloyd B.V. Classification of genetic variation in garlic (Allium sativum L.) revealed by RAPD. HortScience 32 (1997) 1102-1104
    • (1997) HortScience , vol.32 , pp. 1102-1104
    • Al-Zahim, M.1    Newbury, H.J.2    Ford-Lloyd, B.V.3
  • 3
    • 0029849873 scopus 로고    scopus 로고
    • Classification of Australian garlic cultivars by DNA fingerprinting
    • Bradley K.F., Rieger M.A., and Collins G.G. Classification of Australian garlic cultivars by DNA fingerprinting. Aust. J. Exp. Agric. 36 (1996) 613-618
    • (1996) Aust. J. Exp. Agric. , vol.36 , pp. 613-618
    • Bradley, K.F.1    Rieger, M.A.2    Collins, G.G.3
  • 4
    • 0034526686 scopus 로고    scopus 로고
    • Development, inheritance and cross-species amplification of microsatellite markers from Acacia mangium
    • Butcher P.A., Decroocq S., Gray Y., and Moran G.F. Development, inheritance and cross-species amplification of microsatellite markers from Acacia mangium. Theor. Appl. Genet. 101 (2000) 1282-1290
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 1282-1290
    • Butcher, P.A.1    Decroocq, S.2    Gray, Y.3    Moran, G.F.4
  • 5
    • 19744377909 scopus 로고
    • The use of random amplified polymorphic DNA markers in wheat
    • Devos K.M., and Gale M.D. The use of random amplified polymorphic DNA markers in wheat. Theor. Appl. Genet. 84 (1992) 567-572
    • (1992) Theor. Appl. Genet. , vol.84 , pp. 567-572
    • Devos, K.M.1    Gale, M.D.2
  • 7
    • 0030015122 scopus 로고    scopus 로고
    • Microsatellite libraries enriched for several microsatellite sequences in plants
    • Edwards K.J., Barker J.H., Daly A., Jones C., and Karp A. Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques 20 (1996) 758-760
    • (1996) Biotechniques , vol.20 , pp. 758-760
    • Edwards, K.J.1    Barker, J.H.2    Daly, A.3    Jones, C.4    Karp, A.5
  • 8
    • 0008244684 scopus 로고
    • Filaree productions, Okanogan, Washington, USA 213 pp.
    • Engeland R.L. Growing Great Garlic (1991), Filaree productions, Okanogan, Washington, USA 213 pp.
    • (1991) Growing Great Garlic
    • Engeland, R.L.1
  • 10
    • 0034094869 scopus 로고    scopus 로고
    • The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
    • Gupta P.K., and Varshney R.K. The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113 (2000) 163-185
    • (2000) Euphytica , vol.113 , pp. 163-185
    • Gupta, P.K.1    Varshney, R.K.2
  • 12
    • 0030468819 scopus 로고    scopus 로고
    • Fertile clones of garlic (Allium sativum L.) abundant around the Tien Shan Mountains
    • Hong C.J., and Etoh T. Fertile clones of garlic (Allium sativum L.) abundant around the Tien Shan Mountains. Breed. Sci. 46 (1996) 349-353
    • (1996) Breed. Sci. , vol.46 , pp. 349-353
    • Hong, C.J.1    Etoh, T.2
  • 13
    • 13244262973 scopus 로고    scopus 로고
    • Demonstration of linkage and development of the first low-density genetic map of garlic, based on AFLP markers
    • Ipek M., Ipek A.S., Almquist G., and Simon P.W. Demonstration of linkage and development of the first low-density genetic map of garlic, based on AFLP markers. Theor. Appl. Genet. 110 (2005) 228-236
    • (2005) Theor. Appl. Genet. , vol.110 , pp. 228-236
    • Ipek, M.1    Ipek, A.S.2    Almquist, G.3    Simon, P.W.4
  • 14
    • 0037364143 scopus 로고    scopus 로고
    • Comparison of AFLPs, RAPD markers, and isozymes for diversity assessment of garlic and detection of putative duplicates in germplasm collection
    • Ipek M., Ipek A., and Simon P.W. Comparison of AFLPs, RAPD markers, and isozymes for diversity assessment of garlic and detection of putative duplicates in germplasm collection. J. Am. Soc. Hort. Sci. 128 (2003) 246-252
    • (2003) J. Am. Soc. Hort. Sci. , vol.128 , pp. 246-252
    • Ipek, M.1    Ipek, A.2    Simon, P.W.3
  • 15
    • 37049019696 scopus 로고    scopus 로고
    • Molecular characterization of Kastamonu garlic: an economically important garlic clone in Turkey
    • Ipek M., Philipp A.I., and Simon W. Molecular characterization of Kastamonu garlic: an economically important garlic clone in Turkey. Sci. Hortic. 115 (2008) 203-208
    • (2008) Sci. Hortic. , vol.115 , pp. 203-208
    • Ipek, M.1    Philipp, A.I.2    Simon, W.3
  • 16
    • 53249094008 scopus 로고    scopus 로고
    • Rapid characterization of garlic clones with locus-specific DNA markers
    • Ipek M., Ipek A., and Simon P.W. Rapid characterization of garlic clones with locus-specific DNA markers. Turk. J. Agric. For. 32 (2008) 357-362
    • (2008) Turk. J. Agric. For. , vol.32 , pp. 357-362
    • Ipek, M.1    Ipek, A.2    Simon, P.W.3
  • 17
    • 0026543372 scopus 로고
    • Sequence-specific DNA purification by triplex affinity capture
    • Ito T., Smith C.L., and Cantor C.R. Sequence-specific DNA purification by triplex affinity capture. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 495-498
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 495-498
    • Ito, T.1    Smith, C.L.2    Cantor, C.R.3
  • 18
    • 0027234214 scopus 로고
    • Construction of random small-insert genomic libraries highly enriched for simple sequence repeats
    • Karagyozov L., Kalcheva I.D., and Chapman V.M. Construction of random small-insert genomic libraries highly enriched for simple sequence repeats. Nucleic Acids Res. 21 (1993) 3911-3912
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3911-3912
    • Karagyozov, L.1    Kalcheva, I.D.2    Chapman, V.M.3
  • 19
    • 0028026319 scopus 로고
    • Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles
    • Kijas J.M., Fowler J.C., Garbett C.A., and Thomas M.R. Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. Biotechniques 16 (1994) 656-660
    • (1994) Biotechniques , vol.16 , pp. 656-660
    • Kijas, J.M.1    Fowler, J.C.2    Garbett, C.A.3    Thomas, M.R.4
  • 21
    • 68749103620 scopus 로고    scopus 로고
    • Developing one-step program (SSR MANAGER) for rapid identification of clones with SSRs and primer designing. Master Thesis. Seoul National University, the Republic of Korea
    • Kim, K.Y., 2004. Developing one-step program (SSR MANAGER) for rapid identification of clones with SSRs and primer designing. Master Thesis. Seoul National University, the Republic of Korea.
    • (2004)
    • Kim, K.Y.1
  • 22
    • 84879209056 scopus 로고    scopus 로고
    • Delimitation of varietal groups in garlic (Allium sativum L.) by morphological, physiological and biochemical characters
    • Lallemand J., Messian C.M., Briand F., and Etoh T. Delimitation of varietal groups in garlic (Allium sativum L.) by morphological, physiological and biochemical characters. Acta Hort. 433 (1997) 123-132
    • (1997) Acta Hort. , vol.433 , pp. 123-132
    • Lallemand, J.1    Messian, C.M.2    Briand, F.3    Etoh, T.4
  • 23
    • 0042704886 scopus 로고    scopus 로고
    • Genetic diversity among selected Argentinean garlic clones (Allium sativum L.) using AFLP (Amplified Fragment Length Polymorphism) Source
    • Lampasona G.S., Martínez L., and Burba J.L. Genetic diversity among selected Argentinean garlic clones (Allium sativum L.) using AFLP (Amplified Fragment Length Polymorphism) Source. Euphytica 132 (2003) 115-119
    • (2003) Euphytica , vol.132 , pp. 115-119
    • Lampasona, G.S.1    Martínez, L.2    Burba, J.L.3
  • 24
    • 38049079280 scopus 로고    scopus 로고
    • Characterization of microsatellite loci developed for Amaranthus hypochondriacus and their cross-amplifications in wild species
    • Lee J.R., Hong G.Y., Dixit A., Chung J.W., Ma K.H., and Lee J.H. Characterization of microsatellite loci developed for Amaranthus hypochondriacus and their cross-amplifications in wild species. Conserv. Genet. 9 (2007) 243-246
    • (2007) Conserv. Genet. , vol.9 , pp. 243-246
    • Lee, J.R.1    Hong, G.Y.2    Dixit, A.3    Chung, J.W.4    Ma, K.H.5    Lee, J.H.6
  • 25
    • 0036104652 scopus 로고    scopus 로고
    • Genetic analysis of garlic (Allium sativum L.) cultivars using AFLP
    • Lee M.K., Lim Y.P., and Bang J.W. Genetic analysis of garlic (Allium sativum L.) cultivars using AFLP. Korean J. Genet. 24 (2002) 75-81
    • (2002) Korean J. Genet. , vol.24 , pp. 75-81
    • Lee, M.K.1    Lim, Y.P.2    Bang, J.W.3
  • 26
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: a major mechanism for DNA sequence evolution
    • Levinson G., and Gutman G.A. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4 (1987) 213-221
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 213-221
    • Levinson, G.1    Gutman, G.A.2
  • 28
    • 18744382780 scopus 로고    scopus 로고
    • PowerMarker: an integrated analysis environment for genetic marker analysis
    • Liu K., and Muse S.V. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21 (2005) 2128-2129
    • (2005) Bioinformatics , vol.21 , pp. 2128-2129
    • Liu, K.1    Muse, S.V.2
  • 29
    • 36148999806 scopus 로고    scopus 로고
    • Development and characterization of new microsatellite markers for ginseng (Panax ginseng C.A. Meyer)
    • Ma K.H., Dixit A., Kim Y.C., Lee D.Y., Kim T.S., Cho E.G., and Park Y.J. Development and characterization of new microsatellite markers for ginseng (Panax ginseng C.A. Meyer). Conserv. Genet. 8 (2007) 1507-1509
    • (2007) Conserv. Genet. , vol.8 , pp. 1507-1509
    • Ma, K.H.1    Dixit, A.2    Kim, Y.C.3    Lee, D.Y.4    Kim, T.S.5    Cho, E.G.6    Park, Y.J.7
  • 30
    • 35848947519 scopus 로고    scopus 로고
    • Characterization of 30 new microsatellite markers, developed from enriched genomic DNA library of zoysiagrass Zoysia japonica Steud
    • Ma K.H., Jang D.H., Dixit A., Chung J.W., Lee S.Y., et al. Characterization of 30 new microsatellite markers, developed from enriched genomic DNA library of zoysiagrass Zoysia japonica Steud. Mol. Ecol. Notes 7 (2007) 1323-1325
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 1323-1325
    • Ma, K.H.1    Jang, D.H.2    Dixit, A.3    Chung, J.W.4    Lee, S.Y.5
  • 31
    • 0002451926 scopus 로고
    • Intraspecific differentiation of garlic (Allium sativum L.) by isozyme and RAPD markers
    • Maass H.I., and Klaas M. Intraspecific differentiation of garlic (Allium sativum L.) by isozyme and RAPD markers. Theor. Appl. Genet. 91 (1995) 89-97
    • (1995) Theor. Appl. Genet. , vol.91 , pp. 89-97
    • Maass, H.I.1    Klaas, M.2
  • 32
    • 68749122090 scopus 로고    scopus 로고
    • Low genetic diversity among garlic accessions detected using RAPD
    • Mario P.C., Viviana B.V., and María I.A. Low genetic diversity among garlic accessions detected using RAPD. Chilean J. Agric. Res. 68 (2008) 3-12
    • (2008) Chilean J. Agric. Res. , vol.68 , pp. 3-12
    • Mario, P.C.1    Viviana, B.V.2    María, I.A.3
  • 33
    • 13444279930 scopus 로고    scopus 로고
    • Genetic diversity of peanut (Arachis hypogaea L.) and its wild relatives based on the analysis of hypervaraible regions of the genome
    • Moretzsohn M.C., Hopkins M.S., Mitchell S.E., Kresovich S., Valls J.F.M., and Ferreira M.E. Genetic diversity of peanut (Arachis hypogaea L.) and its wild relatives based on the analysis of hypervaraible regions of the genome. BMC Plant Biol. 4 (2004) 11
    • (2004) BMC Plant Biol. , vol.4 , pp. 11
    • Moretzsohn, M.C.1    Hopkins, M.S.2    Mitchell, S.E.3    Kresovich, S.4    Valls, J.F.M.5    Ferreira, M.E.6
  • 34
    • 31344481513 scopus 로고    scopus 로고
    • Diversity analysis of garlic (Allium sativum L.) germplasms available in Nepal based on morphological characters
    • Panthee D.R., KC R.B., Regmi H.N., Subedi P.P., Bhattarai S., and Dhakal J. Diversity analysis of garlic (Allium sativum L.) germplasms available in Nepal based on morphological characters. Genet. Resour. Crop Evol. 53 (2006) 205-212
    • (2006) Genet. Resour. Crop Evol. , vol.53 , pp. 205-212
    • Panthee, D.R.1    KC, R.B.2    Regmi, H.N.3    Subedi, P.P.4    Bhattarai, S.5    Dhakal, J.6
  • 35
    • 0027130879 scopus 로고
    • Characterization and classification of isozyme and morphological variation in a diverse collection of garlic clones
    • Pooler M.R., and Simon P.W. Characterization and classification of isozyme and morphological variation in a diverse collection of garlic clones. Euphytica 68 (1993) 121-130
    • (1993) Euphytica , vol.68 , pp. 121-130
    • Pooler, M.R.1    Simon, P.W.2
  • 36
    • 0033953635 scopus 로고    scopus 로고
    • An economic method for the fluorescent labeling of PCR fragments
    • Schuelke M. An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18 (2000) 233-234
    • (2000) Nat. Biotechnol. , vol.18 , pp. 233-234
    • Schuelke, M.1
  • 37
    • 50949105809 scopus 로고    scopus 로고
    • Morphological characteristics of garlic (Allium sativum L.) genetic resources collection-information
    • Stavělíková H. Morphological characteristics of garlic (Allium sativum L.) genetic resources collection-information. Hort. Sci. (Prague) 35 (2008) 130-135
    • (2008) Hort. Sci. (Prague) , vol.35 , pp. 130-135
    • Stavělíková, H.1
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 40
    • 0002951655 scopus 로고
    • The origin, variation, immunity and breeding of cultivated plants
    • Vavilov N.I. The origin, variation, immunity and breeding of cultivated plants. Chronica Botanica 13 (1951) 1-364
    • (1951) Chronica Botanica , vol.13 , pp. 1-364
    • Vavilov, N.I.1
  • 41
    • 3042721968 scopus 로고    scopus 로고
    • Genetic diversity among U.S. garlic clones as detected using AFLP methods
    • Volk G.M., Henk A.D., and Richards C.M. Genetic diversity among U.S. garlic clones as detected using AFLP methods. J. Am. Soc. Hort. Sci. 129 (2004) 559-569
    • (2004) J. Am. Soc. Hort. Sci. , vol.129 , pp. 559-569
    • Volk, G.M.1    Henk, A.D.2    Richards, C.M.3
  • 42
    • 0025157834 scopus 로고
    • Informativeness of human (dC-dA)n (dG-dT)n polymorphism
    • Weber J.L. Informativeness of human (dC-dA)n (dG-dT)n polymorphism. Genomics 7 (1990) 524-530
    • (1990) Genomics , vol.7 , pp. 524-530
    • Weber, J.L.1
  • 43
    • 68749107280 scopus 로고    scopus 로고
    • Yeh, F.C, Yang, R.C, Boyle, T.J.B, 1999. POPGENE Version 1.32. Microsoft Windows-Based Freeware For Population Genetic Analysis. Computer program and documentation distributed by University of Alberta and Centre for International Forestry Research, Alberta, Canada
    • Yeh, F.C., Yang, R.C., Boyle, T.J.B., 1999. POPGENE Version 1.32. Microsoft Windows-Based Freeware For Population Genetic Analysis. Computer program and documentation distributed by University of Alberta and Centre for International Forestry Research, Alberta, Canada.
  • 44
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: a review
    • Zane L., Bargelloni L., and Patarnello T. Strategies for microsatellite isolation: a review. Mol. Ecol. 11 (2002) 1-16
    • (2002) Mol. Ecol. , vol.11 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3


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