Genotype differentiation of Agamid Adenovirus 1 in bearded dragons (Pogona vitticeps) in the USA by hexon gene sequence

Infection, Genetics and Evolution

Volumn 9, Issue 4, 2009, Pages 501-506

  Parkin, Derek B ^a   Archer, Linda L ^a   Childress, April L ^a   Wellehan Jr , James F X ^a  

^a Scott)   (United States)

Author keywords

Adenovirus; Agamid adenovirus 1; Genotype; Hexon; Phylogeny; Pogona vitticeps

Indexed keywords

DNA POLYMERASE; NUCLEOTIDE;

ADENOVIRUS; AGAMID ADENOVIRUS 1; ARTICLE; CONTROLLED STUDY; GENE AMPLIFICATION; GENE CLUSTER; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC DIFFERENCE; GENETIC VARIABILITY; GENOTYPE; LIZARD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; UNITED STATES; VIRAL GENETICS; VIRUS ISOLATION; VIRUS STRAIN;

ADENOVIRIDAE; ADENOVIRIDAE INFECTIONS; ANIMALS; BASE SEQUENCE; BAYES THEOREM; CAPSID PROTEINS; DNA-DIRECTED DNA POLYMERASE; FECES; GENES, VIRAL; GENOTYPE; LIZARDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; VIRAL PROTEINS;

ADENOVIRIDAE; AGAMID ADENOVIRUS 1; POGONA VITTICEPS;

EID: 68649105453     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2009.01.010     Document Type: Article

References (41)

1. Abad F.X., Pintó R.M., and Bosch A. Survival of enteric viruses on environmental fomites. Applications in Environmental Microbiology 60 (1994) 3704-3710
2. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389-3402
3. Attoui H., Fang Q., Jaafar F.M., Cantaloube J.F., Biagini P., de Micco P., and de Lamballerie X. Common evolutionary origin of aquareoviruses and orthoreoviruses revealed by genome characterization of Golden shiner reovirus, Grass carp reovirus, Striped bass reovirus and golden ide reovirus (genus Aquareovirus, family Reoviridae). Journal of General Virology 83 (2002) 1941-1951
4. Benkö M., Élö P., Ursu K., Ahne W., LaPatra S.E., Thomson D., and Harrach B. First molecular evidence for the existence of distinct fish and snake adenoviruses. Journal of Virology 76 (2002) 10056-10059
5. Benkö M., Harrach B., Both G.W., Russell W.C., Adair B.M., Adam E., Dejong J.C., Hess M., Johnson M., Kajon A., Kidd A.H., Lehmkuhl H.D., Li Q.-G., Mautner V., Pring-Akerblom P., and Wadell G. Family Adenoviridae. In: Fauquet C.M., Mayo M.A., Maniloff J., Desselberger U., and Ball L.A. (Eds). Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses (2005), Academic Press, San Diego, CA 213-228
6. Chang S.Y., Lee C.N., Lin P.H., Huang H.H., Chang L.Y., Ko W., Chang S.F., Lee P.I., Huang L.M., and Kao C.L. A community-derived outbreak of adenovirus type 3 in children in Taiwan between 2004 and 2005. Journal of Medical Virology 80 (2008) 102-112
7. Choi E.H., Kim H.S., Park K.H., and Lee H.J. Genetic heterogeneity of the hexon gene of adenovirus type 3 over a 9-year period in Korea. Journal of Medical Virology 78 (2006) 379-383
8. Crawford-Miksza L., and Schnurr D.P. Analysis of 15 adenovirus hexon proteins reveals the location and structure of seven hypervariable regions containing serotype-specific residues. Journal of Virology 70 (1996) 1836-1844
9. Dán A., Ruzsics Z., Russell W.C., Benkö M., and Harrach B. Analysis of the hexon gene sequence of bovine adenovirus type 4 provides further support for a new adenovirus genus (Atadenovirus). Journal of General Virology 79 (1998) 1453-1460
10. Davison A.J., Wright K.M., and Harrach B. DNA sequence of frog adenovirus. Journal of General Virology 81 (2000) 2431-2439
11. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32 (2004) 1792-1797
12. Engelmann I., Madisch I., Pommer H., and Heim A. An outbreak of epidemic keratoconjunctivitis caused by a new intermediate adenovirus 22/H8 identified by molecular typing. Clinical Infectious Diseases 43 (2006) e64-e66
13. Farkas S.L., Benkö M., Élö P., Ursu K., Dán A., Ahne W., and Harrach B. Genomic and phylogenetic analyses of an adenovirus isolated from a corn snake (Elaphe guttata) imply common origin with the members of the proposed new genus Atadenovirus. Journal of General Virology 83 (2002) 2403-2410
14. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
15. Felsenstein J. PHYLIP-Phylogeny inference package. Cladistics 5 (1989) 164-166
16. Gonzalez J.M., Gomez-Puertas P., Cavanagh D., Gorbalenya A.E., and Enjuanes L. A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae. Archives of Virology 148 (2003) 2207-2235
17. Grgić H., Philippe C., Ojkić D., and Nagy E. Study of vertical transmission of fowl adenoviruses. Canadian Journal of Veterinary Research 70 (2006) 230-233
18. Harrach B. Reptile adenoviruses in cattle?. Acta Veterinaria Hungarica 48 (2000) 485-490
19. Harrach B., Meehan B.M., Benkö M., Adair B.M., and Todd D. Close phylogenetic relationship between egg drop syndrome virus, bovine adenovirus serotype 7, and ovine adenovirus strain 287. Virology 229 (1997) 302-308
20. Hunt P., Fawcett R., Carter R., and Walliker D. Estimating SNP proportions in populations of malaria parasites by sequencing: validation and applications. Molecular and Biochemical Parasitology 143 (2005) 173-182
21. ISIS, International Species Information System: Species Holdings. 2008. 21 Sept. 2008 .
22. Jacobson E.R., Heard D.J., and Isaza R. Future directions in reptile medical education. Journal of Veterinary Medical Education 33 (2006) 373-381
23. Jacobson E.R., Kopit W., Kennedy F.A., and Funk R.S. Coinfection of a bearded dragon, Pogona vitticeps, with adenovirus- and dependovirus-like viruses. Veterinary Pathology 33 (1996) 343-346
24. Julian A.F., and Durham P.J. Adenoviral hepatitis in a female bearded dragon (Amphibolurus barbatus). New Zealand Veterinary Journal 30 (1982) 59-60
25. Kroes A.C., de Klerk E.P., Lankester A.C., Malipaard C., de Brouwer C.S., Claas E.C., Jol-van der Zijde E.C., and van Tol M.J. Sequential emergence of multiple adenovirus serotypes after pediatric stem cell transplantation. Journal of Clinical Virology 38 (2007) 341-347 Epub 2007 Feb 20
26. Kuebber-Heiss A., Benetka V., Filip T., Benyr G., Schilcher F., Pallan C., and Moestl K. First detection of an adenovirus infection in a bearded dragon (Pogona vitticeps) in Austria. Wiener Tierarztliche Monatsschrift 93 (2006) 68-72
27. Lukashev A.N., Ivanova O.E., Eremeeva T.P., and Iggo R.D. Evidence of frequent recombination among human adenoviruses. Journal of General Virology 89 (2008) 380-388
28. Notredame C., Higgins D.G., and Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. Journal of Molecular Biology 302 (2000) 205-217
29. Okuda Y., Ono M., Shibata I., Sato S., and Akashi H. Comparison of the polymerase chain reaction-restriction fragment length polymorphism pattern of the fiber gene and pathogenicity of serotype-1 fowl adenovirus isolates from gizzard erosions and from feces of clinically healthy chickens in Japan. Journal of Veterinary Diagnostic Investigation 18 (2006) 162-167
30. Papp T., Fledelius B., Schmidt V., Kaján G.L., and Marschang R.E. PCR-sequence characterization of new adenoviruses found in reptiles and the first successful isolation of a lizard adenovirus. Veterinary Microbiology August(22) (2008) (Epub ahead of print)
31. Pitcovski J., Mualem M., Rei-Koren Z., Krispel S., Shmueli E., Peretz Y., Gutter B., Gallili G.E., Michael A., and Goldberg D. The complete DNA sequence and genome organization of the avian adenovirus, hemorrhagic enteritis virus. Virology 249 (1998) 307-315
32. Porter J.D., and Lyons R.M. Virucidal effects of rodent cage-cleaning practices on the viability of adenovirus vectors. Contemporary Topics in Laboratory Animal Science 41 (2002) 43-46
33. Rivera, S., Wellehan, J.F.X., McManamon, R., Innis, C.J., Garner, M.M., Raphael, B.L., Gregory, C.R., Latimer, K.S., Rodriguez, C.E., Diaz-Figueroa, O., Marlar, A.B., Nyaoke, A., Gates, A.E., Gilbert, K., Childress, A.L., Risatti, G.R., Frasca, S. An epizootic in Sulawesi tortoises (Indotestudo forsteni) caused by a novel Siadenovirus. Journal of Veterinary Diagnostic Investigation, in press.
34. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
35. Rexroad J., Martin T.T., McNeilly D., Godwin S., and Middaugh C.R. Thermal stability of adenovirus type 2 as a function of pH. Journal of Pharmaceutical Science 95 (2006) 1469-1479
36. Thomson D., Meers J., and Harrach B. Molecular confirmation of an adenovirus in brushtail possums (Trichosurus vulpecula). Virus Research 83 (2002) 189-195
37. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
38. van Hemert F.J., Lukashov V.V., and Berkhout B. Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function. Virology Journal 4 (2007) 25
39. Wadell G., Varsányi T.M., Lord A., and Sutton R.N. Epidemic outbreaks of adenovirus 7 with special reference to the pathogenicity of adenovirus genome type 7b. American Journal of Epidemiology 112 (1980) 619-628
40. Wellehan J.F.X., Johnson A.J., Harrach B., Benkö M., Johnson C., Pessier A., Garner M.M., and Jacobson E.R. Detection and analysis of six lizard adenoviruses by consensus primer PCR provides further evidence of a reptilian origin for the atadenoviruses. Journal of Virology 78 (2004) 13366-13369
41. Yoke-Fun C., and AbuBakar S. Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes. BMC Microbiology 30 6 (2006) 74