메뉴 건너뛰기




Volumn 69, Issue 3, 2009, Pages 425-438

Archaea in the Gulf of Aqaba

Author keywords

Archaea; Crenarchaeota; Euryarchaeota; Gulf of Aqaba; Inorganic CO2 uptake

Indexed keywords

BICARBONATE; LEUCINE; RNA 16S;

EID: 68249119809     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2009.00721.x     Document Type: Article
Times cited : (30)

References (44)
  • 1
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann R, Binder BJ, Olson RJ, Chisholm SW, Devereux R Stahl DA (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microb 56 : 1919 1925.
    • (1990) Appl Environ Microb , vol.56 , pp. 1919-1925
    • Amann, R.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 2
    • 34548492476 scopus 로고    scopus 로고
    • Distribution and diversity of ammonia monooxygenase genes associated with corals
    • Beman JM, Roberts JK, Wegley L, Rohwer F Francis AC (2007) Distribution and diversity of ammonia monooxygenase genes associated with corals. Appl Environ Microb 73 : 5642 5647.
    • (2007) Appl Environ Microb , vol.73 , pp. 5642-5647
    • Beman, J.M.1    Roberts, J.K.2    Wegley, L.3    Rohwer, F.4    Francis, A.C.5
  • 4
    • 0141428760 scopus 로고    scopus 로고
    • Abundance and distribution of planktonic archaea and bacteria in the waters west of the Antarctic Peninsula
    • Church MJ, DeLong EF, Ducklow HW, Karner MB, Preston CM Karl DM (2003) Abundance and distribution of planktonic archaea and bacteria in the waters west of the Antarctic Peninsula. Limnol Oceanogr 48 : 1893 1902.
    • (2003) Limnol Oceanogr , vol.48 , pp. 1893-1902
    • Church, M.J.1    Delong, E.F.2    Ducklow, H.W.3    Karner, M.B.4    Preston, C.M.5    Karl, D.M.6
  • 5
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
    • Daims H, Brühl A, Amann R, Schleifer KH Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22 : 434 444.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 6
    • 0026755238 scopus 로고
    • Archaeal in coastal marine environments
    • DeLong EF (1992) Archaeal in coastal marine environments. P Natl Acad Sci USA 89 : 5685 5689.
    • (1992) P Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 7
    • 1342313706 scopus 로고    scopus 로고
    • Oceans of archaea
    • DeLong EF (2003) Oceans of archaea. ASM News 69 : 503 511.
    • (2003) ASM News , vol.69 , pp. 503-511
    • Delong, E.F.1
  • 8
    • 33646244299 scopus 로고    scopus 로고
    • Archaeal mysteries of the deep revealed
    • DeLong EF (2006) Archaeal mysteries of the deep revealed. P Natl Acad Sci USA 103 : 6417 6418.
    • (2006) P Natl Acad Sci USA , vol.103 , pp. 6417-6418
    • Delong, E.F.1
  • 9
    • 0028594902 scopus 로고
    • High abundance of archaea in Antarctic marine picoplankton
    • DeLong EF, Wu KY, Prézelin BB Jovine RVM (1994) High abundance of archaea in Antarctic marine picoplankton. Nature 371 : 695 697.
    • (1994) Nature , vol.371 , pp. 695-697
    • Delong, E.F.1    Wu, K.Y.2    Prézelin, B.B.3    Jovine, R.V.M.4
  • 10
    • 0032729451 scopus 로고    scopus 로고
    • Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescence in situ hybridization
    • DeLong EF, Taylor LT, Marsh TL Preston CM (1999) Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescence in situ hybridization. Appl Environ Microb 65 : 5554 5556.
    • (1999) Appl Environ Microb , vol.65 , pp. 5554-5556
    • Delong, E.F.1    Taylor, L.T.2    Marsh, T.L.3    Preston, C.M.4
  • 11
    • 0026760934 scopus 로고
    • The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont
    • Embley TM, Finlay BJ, Thomas RH Dyal PL (1992) The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont. J Gen Microbiol 138 : 1479 1487.
    • (1992) J Gen Microbiol , vol.138 , pp. 1479-1487
    • Embley, T.M.1    Finlay, B.J.2    Thomas, R.H.3    Dyal, P.L.4
  • 12
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
    • Francis CA, Roberts KJ, Beman JM, Santoro AE Oakley BB (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. P Natl Acad Sci USA 102 : 14683 14688.
    • (2005) P Natl Acad Sci USA , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 13
    • 0030619262 scopus 로고    scopus 로고
    • Widespread archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequencing
    • Fuhrman JA Davis AA (1997) Widespread archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequencing. Mar Ecol-Prog Ser 150 : 275 285.
    • (1997) Mar Ecol-Prog ser , vol.150 , pp. 275-285
    • Fuhrman, J.A.1    Davis, A.A.2
  • 14
    • 0032471178 scopus 로고    scopus 로고
    • Marine microbial diversity studied via 16S rRNA sequences: Coastal cloning results and counting of native archaea with fluorescent single cell probes
    • Fuhrman JA Ouverney CC (1998) Marine microbial diversity studied via 16S rRNA sequences: coastal cloning results and counting of native archaea with fluorescent single cell probes. Aquat Ecol 32 : 3 15.
    • (1998) Aquat Ecol , vol.32 , pp. 3-15
    • Fuhrman, J.A.1    Ouverney, C.C.2
  • 15
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman JA, McCallum K Davis AA (1992) Novel major archaebacterial group from marine plankton. Nature 356 : 148 149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 16
    • 0028991660 scopus 로고
    • Vertical mixing and coral death in the Red Sea following the eruption of Mount Pinatubo
    • Genin A, Lazar B Brenner S (1995) Vertical mixing and coral death in the Red Sea following the eruption of Mount Pinatubo. Nature 377 : 507 510.
    • (1995) Nature , vol.377 , pp. 507-510
    • Genin, A.1    Lazar, B.2    Brenner, S.3
  • 18
    • 8344250319 scopus 로고    scopus 로고
    • An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments
    • Ishii K, Mußmann M, MacGregor BJ Amann R (2004) An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments. FEMS Microbiol Ecol 50 : 203 213.
    • (2004) FEMS Microbiol Ecol , vol.50 , pp. 203-213
    • Ishii, K.1    Mußmann, M.2    MacGregor, B.J.3    Amann, R.4
  • 19
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner MB, DeLong EF Karl DM (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409 : 507 510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    Delong, E.F.2    Karl, D.M.3
  • 23
    • 33646118981 scopus 로고    scopus 로고
    • Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization
    • Lin X, Wakeham SG, Putnam IF, Astor YM, Scranton MI, Chistoserdov AY Taylor GT (2006) Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Appl Environ Microb 72 : 2679 2690.
    • (2006) Appl Environ Microb , vol.72 , pp. 2679-2690
    • Lin, X.1    Wakeham, S.G.2    Putnam, I.F.3    Astor, Y.M.4    Scranton, M.I.5    Chistoserdov, A.Y.6    Taylor, G.T.7
  • 24
    • 0028982376 scopus 로고
    • Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat), Red Sea
    • Lindell D Post AF (1995) Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat), Red Sea. Limnol Oceanogr 40 : 1130 1141.
    • (1995) Limnol Oceanogr , vol.40 , pp. 1130-1141
    • Lindell, D.1    Post, A.F.2
  • 25
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic archaea in the Santa Barbara channel
    • Massana R, Murray A, Preston CM DeLong EF (1997) Vertical distribution and phylogenetic characterization of marine planktonic archaea in the Santa Barbara channel. Appl Environ Microb 63 : 50 56.
    • (1997) Appl Environ Microb , vol.63 , pp. 50-56
    • Massana, R.1    Murray, A.2    Preston, C.M.3    Delong, E.F.4
  • 26
    • 0030734675 scopus 로고    scopus 로고
    • Phylogenetic analysis of Group i marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group archaea
    • McInerney JO, Mullarkey M, Wernecke ME Powell R (1997) Phylogenetic analysis of Group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group archaea. P Roy Soc Lond B Bio 264 : 1663 1669.
    • (1997) P Roy Soc Lond B Bio , vol.264 , pp. 1663-1669
    • McInerney, J.O.1    Mullarkey, M.2    Wernecke, M.E.3    Powell, R.4
  • 27
    • 0000028423 scopus 로고
    • A quantitative approach to a problem in classification
    • Michener CD Sokal RR (1957) A quantitative approach to a problem in classification. Evolution 11 : 130 262.
    • (1957) Evolution , vol.11 , pp. 130-262
    • Michener, C.D.1    Sokal, R.R.2
  • 28
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR amplified gene fragments coding for 16S rRNA
    • Øvreås L, Forney L, Daae FL Torsvik V (1997) Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR amplified gene fragments coding for 16S rRNA. Appl Environ Microb 63 : 3367 3373.
    • (1997) Appl Environ Microb , vol.63 , pp. 3367-3373
    • Øvreås, L.1    Forney, L.2    Daae, F.L.3    Torsvik, V.4
  • 29
    • 33745163916 scopus 로고    scopus 로고
    • Diversity of Synechococcus and Prochlorococcus populations determined from DNA sequences of the N-regulatory gene ntcA
    • Penno S, Lindell D Post AF (2006) Diversity of Synechococcus and Prochlorococcus populations determined from DNA sequences of the N-regulatory gene ntcA. Environ Microbiol 8 : 1200 1211.
    • (2006) Environ Microbiol , vol.8 , pp. 1200-1211
    • Penno, S.1    Lindell, D.2    Post, A.F.3
  • 30
    • 1542472178 scopus 로고    scopus 로고
    • Detection of hyperthermophilic archaea of the genus Desulfurococcus by hybridization with oligonucleotide probes
    • Perevalova AA, Lebedinsky AV, Bonch-Osmolovskaya EA Chernykh NA (2003) Detection of hyperthermophilic archaea of the genus Desulfurococcus by hybridization with oligonucleotide probes. Microbiology 72 : 340 346.
    • (2003) Microbiology , vol.72 , pp. 340-346
    • Perevalova, A.A.1    Lebedinsky, A.V.2    Bonch-Osmolovskaya, E.A.3    Chernykh, N.A.4
  • 31
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for identification of marine bacteria
    • Pernthaler A, Pernthaler J Amann R (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for identification of marine bacteria. Appl Environ Microb 68 : 3094 3101.
    • (2002) Appl Environ Microb , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 32
    • 0028165830 scopus 로고
    • Group specific 16S rRNA hybridization probes to describe natural communities of methanogens
    • Raskin L, Stromley JM, Rittmann BE Stahl DA (1994) Group specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microb 60 : 1232 1240.
    • (1994) Appl Environ Microb , vol.60 , pp. 1232-1240
    • Raskin, L.1    Stromley, J.M.2    Rittmann, B.E.3    Stahl, D.A.4
  • 33
    • 0037882329 scopus 로고    scopus 로고
    • An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization
    • Sekar R, Pernthaler A, Pernthaler J, Warneke F, Posch T Amann R (2003) An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl Environ Microb 69 : 2928 2935.
    • (2003) Appl Environ Microb , vol.69 , pp. 2928-2935
    • Sekar, R.1    Pernthaler, A.2    Pernthaler, J.3    Warneke, F.4    Posch, T.5    Amann, R.6
  • 35
    • 52949136247 scopus 로고    scopus 로고
    • Global distribution and diversity of coral-associated Archaea and their possible role in the coral holobiont nitrogen cycle
    • Siboni N, Ben-Dov E, Sivan A Kushmaro A (2008) Global distribution and diversity of coral-associated Archaea and their possible role in the coral holobiont nitrogen cycle. Environ Microbiol 10 : 2979 2990.
    • (2008) Environ Microbiol , vol.10 , pp. 2979-2990
    • Siboni, N.1    Ben-Dov, E.2    Sivan, A.3    Kushmaro, A.4
  • 36
    • 0001003553 scopus 로고
    • Protein content and protein synthesis rates of planktonic marine bacteria
    • Simon M Azam F (1989) Protein content and protein synthesis rates of planktonic marine bacteria. Mar Ecol-Prog Ser 51 : 201 213.
    • (1989) Mar Ecol-Prog ser , vol.51 , pp. 201-213
    • Simon, M.1    Azam, F.2
  • 37
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • Stackebrandt, E. Goodfellow, M. eds), pp. John Wiley & Sons. Chichester.
    • Stahl DA Amann R (1991) Development and application of nucleic acid probes. Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt E Goodfellow M, eds), pp. 205 247. John Wiley & Sons, Chichester.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-247
    • Stahl, D.A.1    Amann, R.2
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24 : 1596 1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 3242797565 scopus 로고    scopus 로고
    • Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by Bacteria and Archaea in the deep ocean
    • Teira E, Reinthaler T, Pernthaler A, Pernthaler J Herndl GJ (2004) Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by Bacteria and Archaea in the deep ocean. Appl Environ Microb 70 : 4411 4414.
    • (2004) Appl Environ Microb , vol.70 , pp. 4411-4414
    • Teira, E.1    Reinthaler, T.2    Pernthaler, A.3    Pernthaler, J.4    Herndl, G.J.5
  • 40
    • 41149093627 scopus 로고    scopus 로고
    • Uncultured archaea in deep marine subsurface sediments: Have we caught them all?
    • Teske A Sørensen KB (2008) Uncultured archaea in deep marine subsurface sediments: have we caught them all? ISME J 2 : 3 18.
    • (2008) ISME J , vol.2 , pp. 3-18
    • Teske, A.1    Sørensen, K.B.2
  • 41
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic Crenarchaeota in nitrogen cycling
    • Treusch HA, Leininger S, Kletzin A, Schuster CS, Klenk HP Schleper C (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic Crenarchaeota in nitrogen cycling. Environ Microbiol 7 : 1985 1995.
    • (2005) Environ Microbiol , vol.7 , pp. 1985-1995
    • Treusch, H.A.1    Leininger, S.2    Kletzin, A.3    Schuster, C.S.4    Klenk, H.P.5    Schleper, C.6
  • 42
    • 0027339723 scopus 로고
    • Optimizing fluorescent in sit hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
    • DOI 10.1002/cyto.990140205
    • Wallner G, Amann R Beisker W (1993) Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14 : 136 143. (Pubitemid 23042736)
    • (1993) Cytometry , vol.14 , Issue.2 , pp. 136-143
    • Wallner, G.1    Amann, R.2    Beisker, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.