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Volumn 49, Issue 7, 2009, Pages 1847-1855

Elucidating molecular overlays from pairwise alignments using a genetic algorithm

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; CRYSTAL STRUCTURE; GENETIC ALGORITHMS; MOLECULES; PROTEINS; SOFTWARE TESTING;

EID: 68149170464     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci900109n     Document Type: Article
Times cited : (11)

References (29)
  • 1
    • 0348227698 scopus 로고    scopus 로고
    • The Impact of Structure-Guided Drug Design on Clinical Agents
    • Hardy, L. W.; Malikayil, A. The Impact of Structure-Guided Drug Design on Clinical Agents. Curr. Drug. Discovery 2003, 15, 15-20.
    • (2003) Curr. Drug. Discovery , vol.15 , pp. 15-20
    • Hardy, L.W.1    Malikayil, A.2
  • 3
    • 33947258002 scopus 로고    scopus 로고
    • Ligand-based drug design methodologies in drug discovery process: An overview
    • Bacilieri, M.; Moro, S. Ligand-based drug design methodologies in drug discovery process: an overview. Curr. Drug Discovery Technol. 2006, 3, 155-165.
    • (2006) Curr. Drug Discovery Technol , vol.3 , pp. 155-165
    • Bacilieri, M.1    Moro, S.2
  • 4
    • 0034065350 scopus 로고    scopus 로고
    • Computational methods for the structural alignment of molecules
    • Lemmen, C.; Lengauer, T. Computational methods for the structural alignment of molecules. J. Comput.-Aided Mol. Des. 2000, 14 (3), 215-232.
    • (2000) J. Comput.-Aided Mol. Des , vol.14 , Issue.3 , pp. 215-232
    • Lemmen, C.1    Lengauer, T.2
  • 5
    • 0842325913 scopus 로고    scopus 로고
    • Ligand-based structural hypotheses for virtual screening
    • Jain, A. N. Ligand-based structural hypotheses for virtual screening. J. Med. Chem. 2004, 47 (4), 947-961.
    • (2004) J. Med. Chem , vol.47 , Issue.4 , pp. 947-961
    • Jain, A.N.1
  • 6
    • 0027548454 scopus 로고    scopus 로고
    • Martin, Y. C.; Bures, M. G.; Danaher, E. A.; DeLazzer, J.; DeLazzer, J.; Lico, I.; Pavlik, P. A. A fast new approach to pharmacophore mapping and its application to dopaminergic and benzodiazepine agonists. J. Comput.-Aided Mol. Des. 1993, 7 (1), 83-102.
    • Martin, Y. C.; Bures, M. G.; Danaher, E. A.; DeLazzer, J.; DeLazzer, J.; Lico, I.; Pavlik, P. A. A fast new approach to pharmacophore mapping and its application to dopaminergic and benzodiazepine agonists. J. Comput.-Aided Mol. Des. 1993, 7 (1), 83-102.
  • 7
    • 0030137662 scopus 로고    scopus 로고
    • Identification of common functional configurations among molecules
    • Barnum, D.; Greene, J.; Smellie, A.; Sprague, P. Identification of common functional configurations among molecules. J. Chem. Inf. Comput. Sci. 1996, 36 (3), 563-571.
    • (1996) J. Chem. Inf. Comput. Sci , vol.36 , Issue.3 , pp. 563-571
    • Barnum, D.1    Greene, J.2    Smellie, A.3    Sprague, P.4
  • 9
    • 0029444383 scopus 로고
    • A genetic algorithm for flexible molecular overlay and pharmacophore elucidation
    • Jones, G.; Willett, P.; Glen, R. C. A genetic algorithm for flexible molecular overlay and pharmacophore elucidation. J. Comput.-Aided Mol. Des. 1995, 9 (6), 532-548.
    • (1995) J. Comput.-Aided Mol. Des , vol.9 , Issue.6 , pp. 532-548
    • Jones, G.1    Willett, P.2    Glen, R.C.3
  • 10
    • 85128250021 scopus 로고    scopus 로고
    • Cho, S. J.; Sun, Y. FLAME: A Program to Flexibly Align Molecules. J. Chem. Inf. Model. 2006, 46 (1), 298-306.
    • Cho, S. J.; Sun, Y. FLAME: A Program to Flexibly Align Molecules. J. Chem. Inf. Model. 2006, 46 (1), 298-306.
  • 12
    • 0032488013 scopus 로고    scopus 로고
    • A Method for Fast Flexible Ligand Superposition
    • Lemmen, C.; Lengauer, T.; Klebe, G. FLEXS: A Method for Fast Flexible Ligand Superposition. J. Med. Chem. 1998, 41 (23), 4502-4520.
    • (1998) J. Med. Chem , vol.41 , Issue.23 , pp. 4502-4520
    • Lemmen, C.1    Lengauer, T.2    Klebe3    FLEXS, G.4
  • 13
    • 44949267284 scopus 로고
    • An alternative method for the alignment of molecular structures: Maximizing electrostatic and steric overlap
    • 6c, 615-633
    • Kearsley, S. K.; Smith, G. M. An alternative method for the alignment of molecular structures: maximizing electrostatic and steric overlap. Tetrahedron Comput. Methodol. 1990, 3 (6c), 615-633.
    • (1990) Tetrahedron Comput. Methodol , vol.3
    • Kearsley, S.K.1    Smith, G.M.2
  • 14
    • 0032818587 scopus 로고    scopus 로고
    • Estimation of active conformations of drugs by a new molecular superposing procedure
    • Iwase, K.; Hirono, S. Estimation of active conformations of drugs by a new molecular superposing procedure. J. Compul.-Aided Mol. Des. 1999, 13 (5), 499-512.
    • (1999) J. Compul.-Aided Mol. Des , vol.13 , Issue.5 , pp. 499-512
    • Iwase, K.1    Hirono, S.2
  • 15
    • 0033529045 scopus 로고    scopus 로고
    • Miller, M. D.; Sheridan, R. P.; Kearsley, S. K. SQ: A Program for Rapidly Producing Pharmacophorically Relevant Molecular Superpositions. J. Med. Chem. 1999, 42 (9), 1505-1514.
    • Miller, M. D.; Sheridan, R. P.; Kearsley, S. K. SQ: A Program for Rapidly Producing Pharmacophorically Relevant Molecular Superpositions. J. Med. Chem. 1999, 42 (9), 1505-1514.
  • 16
    • 68149143898 scopus 로고    scopus 로고
    • ROCS, version 2.3.1; Openeye Scientific Software: Santa Fe, NM, 2007
    • ROCS, version 2.3.1; Openeye Scientific Software: Santa Fe, NM, 2007.
  • 17
    • 68149143897 scopus 로고    scopus 로고
    • Omega, version 2.2.1; Openeye Scientific Software: Santa Fe, NM, 2007
    • Omega, version 2.2.1; Openeye Scientific Software: Santa Fe, NM, 2007.
  • 19
    • 33750290951 scopus 로고    scopus 로고
    • Geometric Accuracy of Three-Dimensional Molecular Overlays
    • Chen, Q.; Higgs, R. E.; Vieth, M. Geometric Accuracy of Three-Dimensional Molecular Overlays. J. Chem. Inf. Model. 2006, 46 (5), 1996-2002.
    • (2006) J. Chem. Inf. Model , vol.46 , Issue.5 , pp. 1996-2002
    • Chen, Q.1    Higgs, R.E.2    Vieth, M.3
  • 20
    • 68149113853 scopus 로고    scopus 로고
    • MOE, version 2007.09; Chemical Computing Group: Montreal, Canada, 2007
    • MOE, version 2007.09; Chemical Computing Group: Montreal, Canada, 2007.
  • 22
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • Jones, G.; Willett, P.; Glen, R. C.; Leach, A. R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol. 1997, 267 (3), 727-748.
    • (1997) J. Mol. Biol , vol.267 , Issue.3 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 26
    • 33750991346 scopus 로고    scopus 로고
    • Benchmarking Sets for Molecular Docking
    • Huang, N.; Shoichet, B. K.; Irwin, J. J. Benchmarking Sets for Molecular Docking. J. Med. Chem. 2006, 49, 6789-6801.
    • (2006) J. Med. Chem , vol.49 , pp. 6789-6801
    • Huang, N.1    Shoichet, B.K.2    Irwin, J.J.3
  • 27
    • 33846404143 scopus 로고    scopus 로고
    • Dissection of the Recognition Properties of p38 MAP Kinase. Determination of the Binding Mode of a New Pyridinyl-Heterocycle Inhibitor Family
    • Soliva, R.; Gelpi, J. L.; Almansa, C.; Virgili, M.; Orozco, M. Dissection of the Recognition Properties of p38 MAP Kinase. Determination of the Binding Mode of a New Pyridinyl-Heterocycle Inhibitor Family. J. Med. Chem. 2007, 50 (2), 283-293.
    • (2007) J. Med. Chem , vol.50 , Issue.2 , pp. 283-293
    • Soliva, R.1    Gelpi, J.L.2    Almansa, C.3    Virgili, M.4    Orozco, M.5
  • 29
    • 0023751431 scopus 로고
    • Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
    • Cramer, R. D.; Patterson, D. E.; Bunce, J. D. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 1988, 110, 5959-5967.
    • (1988) J. Am. Chem. Soc , vol.110 , pp. 5959-5967
    • Cramer, R.D.1    Patterson, D.E.2    Bunce, J.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.