-
1
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
Sjoblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, Mandelker D, Leary RJ, Ptak J, Silliman N et al. (2006) The consensus coding sequences of human breast and colorectal cancers. Science 314, 268 274.
-
(2006)
Science
, vol.314
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
Barber, T.D.6
Mandelker, D.7
Leary, R.J.8
Ptak, J.9
Silliman, N.10
-
2
-
-
33947101019
-
Patterns of somatic mutation in human cancer genomes
-
Greenman C, Stephens P, Smith R, Dalgliesh GL, Hunter C, Bignell G, Davies H, Teague J, Butler A, Stevens C et al. (2007) Patterns of somatic mutation in human cancer genomes. Nature 446, 153 158.
-
(2007)
Nature
, vol.446
, pp. 153-158
-
-
Greenman, C.1
Stephens, P.2
Smith, R.3
Dalgliesh, G.L.4
Hunter, C.5
Bignell, G.6
Davies, H.7
Teague, J.8
Butler, A.9
Stevens, C.10
-
3
-
-
33847261458
-
The devil is in the DNA
-
Chanock SJ Thomas G (2007) The devil is in the DNA. Nat Genet 39, 283 284.
-
(2007)
Nat Genet
, vol.39
, pp. 283-284
-
-
Chanock, S.J.1
Thomas, G.2
-
4
-
-
0035026704
-
Predicting deleterious amino acid substitutions
-
Ng PC Henikoff S (2001) Predicting deleterious amino acid substitutions. Genome Res 11, 863 874.
-
(2001)
Genome Res
, vol.11
, pp. 863-874
-
-
Ng, P.C.1
Henikoff, S.2
-
5
-
-
0036119504
-
Accounting for human polymorphisms predicted to affect protein function
-
Ng PC Henikoff S (2002) Accounting for human polymorphisms predicted to affect protein function. Genome Res 12, 436 446.
-
(2002)
Genome Res
, vol.12
, pp. 436-446
-
-
Ng, P.C.1
Henikoff, S.2
-
6
-
-
33644537810
-
Comprehensive statistical study of 452 BRCA1 missense substitutions with classification of eight recurrent substitutions as neutral
-
Tavtigian SV, Deffenbaugh AM, Yin L, Judkins T, Scholl T, Samollow PB, de Silva D, Zharkikh A Thomas A (2006) Comprehensive statistical study of 452 BRCA1 missense substitutions with classification of eight recurrent substitutions as neutral. J Med Genet 43, 295 305.
-
(2006)
J Med Genet
, vol.43
, pp. 295-305
-
-
Tavtigian, S.V.1
Deffenbaugh, A.M.2
Yin, L.3
Judkins, T.4
Scholl, T.5
Samollow, P.B.6
De Silva, D.7
Zharkikh, A.8
Thomas, A.9
-
7
-
-
33748339364
-
Structural assessment of single amino acid mutations: Application to TP53 function
-
Yip YL, Zoete V, Scheib H Michielin O (2006) Structural assessment of single amino acid mutations: application to TP53 function. Hum Mutat 27, 926 937.
-
(2006)
Hum Mutat
, vol.27
, pp. 926-937
-
-
Yip, Y.L.1
Zoete, V.2
Scheib, H.3
Michielin, O.4
-
8
-
-
0035751937
-
Assessing TP53 status in human tumours to evaluate clinical outcome
-
Soussi T Beroud C (2001) Assessing TP53 status in human tumours to evaluate clinical outcome. Nat Rev Cancer 1, 233 240.
-
(2001)
Nat Rev Cancer
, vol.1
, pp. 233-240
-
-
Soussi, T.1
Beroud, C.2
-
9
-
-
0033986412
-
P53 website and analysis of p53 gene mutations in human cancer: Forging a link between epidemiology and carcinogenesis
-
DOI 10.1002/(SICI)1098-1004(200001)15:1<105::AID-HUMU19>3.0.CO;2-G
-
Soussi T, Dehouche K Beroud C (2000) p53 website and analysis of p53 gene mutations in human cancer: forging a link between epidemiology and carcinogenesis. Hum Mutat 15, 105 113. (Pubitemid 30036177)
-
(2000)
Human Mutation
, vol.15
, Issue.1
, pp. 105-113
-
-
Soussi, T.1
Dehouche, K.2
Beroud, C.3
-
10
-
-
0037816165
-
Understanding the function-structure and function-mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis
-
Kato S, Han SY, Liu W, Otsuka K, Shibata H, Kanamaru R Ishioka C (2003) Understanding the function-structure and function-mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis. Proc Natl Acad Sci USA 100, 8424 8429.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8424-8429
-
-
Kato, S.1
Han, S.Y.2
Liu, W.3
Otsuka, K.4
Shibata, H.5
Kanamaru, R.6
Ishioka, C.7
-
11
-
-
0037468254
-
Detailed computational study of p53 and p16: Using evolutionary sequence analysis and disease-associated mutations to predict the functional consequences of allelic variants
-
Greenblatt MS, Beaudet JG, Gump JR, Godin KS, Trombley L, Koh J Bond JP (2003) Detailed computational study of p53 and p16: using evolutionary sequence analysis and disease-associated mutations to predict the functional consequences of allelic variants. Oncogene 22, 1150 1163.
-
(2003)
Oncogene
, vol.22
, pp. 1150-1163
-
-
Greenblatt, M.S.1
Beaudet, J.G.2
Gump, J.R.3
Godin, K.S.4
Trombley, L.5
Koh, J.6
Bond, J.P.7
-
12
-
-
33751547274
-
Molecular model of human CYP21 based on mammalian CYP2C5: Structural features correlate with clinical severity of mutations causing congenital adrenal hyperplasia
-
Robins T, Carlsson J, Sunnerhagen M, Wedell A Persson B (2006) Molecular model of human CYP21 based on mammalian CYP2C5: structural features correlate with clinical severity of mutations causing congenital adrenal hyperplasia. Mol Endocrinol 20, 2946 2964.
-
(2006)
Mol Endocrinol
, vol.20
, pp. 2946-2964
-
-
Robins, T.1
Carlsson, J.2
Sunnerhagen, M.3
Wedell, A.4
Persson, B.5
-
13
-
-
0027359827
-
WAF1, a potential mediator of p53 tumor suppression
-
el-Deiry WS, Tokino T, Velculescu VE, Levy DB, Parsons R, Trent JM, Lin D, Mercer WE, Kinzler KW Vogelstein B (1993) WAF1, a potential mediator of p53 tumor suppression. Cell 75, 817 825.
-
(1993)
Cell
, vol.75
, pp. 817-825
-
-
El-Deiry, W.S.1
Tokino, T.2
Velculescu, V.E.3
Levy, D.B.4
Parsons, R.5
Trent, J.M.6
Lin, D.7
Mercer, W.E.8
Kinzler, K.W.9
Vogelstein, B.10
-
14
-
-
0011529668
-
Thirteen ways to look at the correlation coefficient
-
Rodgers JL Nicewander WA (1988) Thirteen ways to look at the correlation coefficient. Am Stat 42, 8.
-
(1988)
Am Stat
, vol.428
-
-
Rodgers, J.L.1
Nicewander, W.A.2
-
15
-
-
1942454274
-
PCA in studying coordination and variability: A tutorial
-
Daffertshofer A, Lamoth CJ, Meijer OG Beek PJ (2004) PCA in studying coordination and variability: a tutorial. Clin Biomech (Bristol, Avon) 19, 415 428.
-
(2004)
Clin Biomech (Bristol, Avon)
, vol.19
, pp. 415-428
-
-
Daffertshofer, A.1
Lamoth, C.J.2
Meijer, O.G.3
Beek, P.J.4
-
18
-
-
0029806936
-
Preferential formation of benzo[a]pyrene adducts at lung cancer mutational hotspots in P53
-
Denissenko MF, Pao A, Tang M Pfeifer GP (1996) Preferential formation of benzo[a]pyrene adducts at lung cancer mutational hotspots in P53. Science 274, 430 432.
-
(1996)
Science
, vol.274
, pp. 430-432
-
-
Denissenko, M.F.1
Pao, A.2
Tang, M.3
Pfeifer, G.P.4
-
19
-
-
0027049243
-
The kinemage: A tool for scientific communication
-
Richardson DC Richardson JS (1992) The kinemage: a tool for scientific communication. Protein Sci 1, 3 9.
-
(1992)
Protein Sci
, vol.1
, pp. 3-9
-
-
Richardson, D.C.1
Richardson, J.S.2
-
20
-
-
33644993216
-
Computational approaches for predicting the biological effect of p53 missense mutations: A comparison of three sequence analysis based methods
-
Mathe E, Olivier M, Kato S, Ishioka C, Hainaut P Tavtigian SV (2006) Computational approaches for predicting the biological effect of p53 missense mutations: a comparison of three sequence analysis based methods. Nucleic Acids Res 34, 1317 1325.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1317-1325
-
-
Mathe, E.1
Olivier, M.2
Kato, S.3
Ishioka, C.4
Hainaut, P.5
Tavtigian, S.V.6
-
23
-
-
68149104857
-
-
Reference withdrawn.
-
Reference withdrawn.
-
-
-
-
25
-
-
0027983669
-
Crystal structure of a p53 tumor suppressor-DNA complex: Understanding tumorigenic mutations
-
Cho Y, Gorina S, Jeffrey PD Pavletich NP (1994) Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations. Science 265, 346 355.
-
(1994)
Science
, vol.265
, pp. 346-355
-
-
Cho, Y.1
Gorina, S.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
26
-
-
0027955787
-
Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins
-
Abagyan R Totrov M (1994) Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins. J Mol Biol 235, 983 1002.
-
(1994)
J Mol Biol
, vol.235
, pp. 983-1002
-
-
Abagyan, R.1
Totrov, M.2
-
27
-
-
84986522918
-
Icm- a new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation
-
Abagyan R, Totrov M Kuznetsov D (1994) icm- a new method for protein modeling and design: applications to docking and structure prediction from the distorted native conformation. J Comput Chem 15, 488 506.
-
(1994)
J Comput Chem
, vol.15
, pp. 488-506
-
-
Abagyan, R.1
Totrov, M.2
Kuznetsov, D.3
-
28
-
-
0001731773
-
Energy parameters in polypeptides. 10. Improved geometrical parameters and nonbonded interactions for use in the ECEPP/3 algorithm, with application to proline-containing peptides
-
Nemethy G, Gibson KD, Palmer KA, Yoon CN, Paterlini G, Zagari A, Rumsey S Scheraga HA (1992) Energy parameters in polypeptides. 10. Improved geometrical parameters and nonbonded interactions for use in the ECEPP/3 algorithm, with application to proline-containing peptides. J Phys Chem 96, 6472 6484.
-
(1992)
J Phys Chem
, vol.96
, pp. 6472-6484
-
-
Nemethy, G.1
Gibson, K.D.2
Palmer, K.A.3
Yoon, C.N.4
Paterlini, G.5
Zagari, A.6
Rumsey, S.7
Scheraga, H.A.8
-
29
-
-
0025296623
-
Free energy changes associated with amino acid substitution in proteins
-
Saqi MA Goodfellow JM (1990) Free energy changes associated with amino acid substitution in proteins. Protein Eng 3, 419 423.
-
(1990)
Protein Eng
, vol.3
, pp. 419-423
-
-
Saqi, M.A.1
Goodfellow, J.M.2
-
30
-
-
0035065485
-
SNPs, protein structure, and disease
-
Wang Z Moult J (2001) SNPs, protein structure, and disease. Hum Mutat 17, 263 270.
-
(2001)
Hum Mutat
, vol.17
, pp. 263-270
-
-
Wang, Z.1
Moult, J.2
-
31
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
-
Guerois R, Nielsen JE Serrano L (2002) Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J Mol Biol 320, 369 387.
-
(2002)
J Mol Biol
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
32
-
-
27544469800
-
Predicting protein stability changes from sequences using support vector machines
-
Capriotti E, Fariselli P, Calabrese R Casadio R (2005) Predicting protein stability changes from sequences using support vector machines. Bioinformatics 21 (Suppl 2 ii54 ii58.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Capriotti, E.1
Fariselli, P.2
Calabrese, R.3
Casadio, R.4
-
33
-
-
34548426131
-
Modeling mutations in protein structures
-
Feyfant E, Sali A Fiser A (2007) Modeling mutations in protein structures. Protein Sci 16, 2030 2041.
-
(2007)
Protein Sci
, vol.16
, pp. 2030-2041
-
-
Feyfant, E.1
Sali, A.2
Fiser, A.3
-
34
-
-
27644489960
-
Statistical geometry approach to the study of functional effects of human nonsynonymous SNPs
-
Barenboim M, Jamison DC Vaisman II (2005) Statistical geometry approach to the study of functional effects of human nonsynonymous SNPs. Hum Mutat 26, 471 476.
-
(2005)
Hum Mutat
, vol.26
, pp. 471-476
-
-
Barenboim, M.1
Jamison, D.C.2
Vaisman, I.I.3
-
35
-
-
0035937259
-
Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: Structure-based assessment of amino acid variation
-
Chasman D Adams RM (2001) Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation. J Mol Biol 307, 683 706.
-
(2001)
J Mol Biol
, vol.307
, pp. 683-706
-
-
Chasman, D.1
Adams, R.M.2
-
36
-
-
43449084619
-
Prediction of functional nonsynonymous single nucleotide polymorphisms in human G-protein-coupled receptors
-
Xue D, Yin J, Tan M, Yue J, Wang Y Liang L (2008) Prediction of functional nonsynonymous single nucleotide polymorphisms in human G-protein-coupled receptors. J Hum Genet 53, 379 389.
-
(2008)
J Hum Genet
, vol.53
, pp. 379-389
-
-
Xue, D.1
Yin, J.2
Tan, M.3
Yue, J.4
Wang, Y.5
Liang, L.6
-
37
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews BW (1975) Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 405, 442 451.
-
(1975)
Biochim Biophys Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
38
-
-
0036159740
-
Integrating mutation data and structural analysis of the TP53 tumor-suppressor protein
-
Martin AC, Facchiano AM, Cuff AL, Hernandez-Boussard T, Olivier M, Hainaut P Thornton JM (2002) Integrating mutation data and structural analysis of the TP53 tumor-suppressor protein. Hum Mutat 19, 149 164.
-
(2002)
Hum Mutat
, vol.19
, pp. 149-164
-
-
Martin, A.C.1
Facchiano, A.M.2
Cuff, A.L.3
Hernandez-Boussard, T.4
Olivier, M.5
Hainaut, P.6
Thornton, J.M.7
-
39
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W Sander C (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577 2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
40
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157, 105 132.
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
41
-
-
0014349825
-
The characterization of amino acid sequences in proteins by statistical methods
-
Zimmerman JM, Eliezer N Simha R (1968) The characterization of amino acid sequences in proteins by statistical methods. J Theor Biol 21, 170 201.
-
(1968)
J Theor Biol
, vol.21
, pp. 170-201
-
-
Zimmerman, J.M.1
Eliezer, N.2
Simha, R.3
-
42
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG Thompson JD (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31, 3497 3500.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
|