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Volumn 36, Issue 7, 2009, Pages 1757-1765

The mitochondrial genome of Protohermes concolorus Yang et Yang 1988 (Insecta: Megaloptera: Corydalidae)

Author keywords

Corydalidae; Insecta; Megaloptera; Mitochondrial genome; Protohermes concolorus

Indexed keywords

SERINE TRANSFER RNA; TRANSFER RNA;

EID: 68149126139     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-008-9379-0     Document Type: Article
Times cited : (21)

References (46)
  • 1
    • 0023496815 scopus 로고
    • Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics
    • JA Avise J Aronold RM Ball E Bermingham JE Neigel CA Reeb 1987 Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics Annu Rev Ecol Syst 18 489 522
    • (1987) Annu Rev Ecol Syst , vol.18 , pp. 489-522
    • Avise, J.A.1    Aronold, J.2    Ball, R.M.3    Bermingham, E.4    Neigel, J.E.5    Reeb, C.A.6
  • 2
    • 0028251187 scopus 로고
    • Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers
    • C Simon F Frati A Beckenbach B Cresp H Liu P Flook 1994 Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers Ann Entomol Soc Am 87 651 701
    • (1994) Ann Entomol Soc Am , vol.87 , pp. 651-701
    • Simon, C.1    Frati, F.2    Beckenbach, A.3    Cresp, B.4    Liu, H.5    Flook, P.6
  • 3
    • 0031769998 scopus 로고    scopus 로고
    • Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool
    • DOI 10.1016/S0959-437X(98)80035-X
    • JL Boore WM Brown 1998 Big trees from little genomes: mitochondrial gene order as a phylogenetic tool Curr Opin Genet Dev 8 6 668 674 10.1016/S0959-437X(98)80035-X (Pubitemid 28558529)
    • (1998) Current Opinion in Genetics and Development , vol.8 , Issue.6 , pp. 668-674
    • Boore, J.L.1    Brown, W.M.2
  • 4
    • 0036434711 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference from animal mitochondrial genome arrangements
    • 10.1111/1467-9868.00356
    • B Larget DL Simon JB Kadane 2002 Bayesian phylogenetic inference from animal mitochondrial genome arrangements J R Stat Soc Ser B Stat Methodol 64 681 693 10.1111/1467-9868.00356
    • (2002) J R Stat Soc ser B Stat Methodol , vol.64 , pp. 681-693
    • Larget, B.1    Simon, D.L.2    Kadane, J.B.3
  • 7
    • 0035010492 scopus 로고    scopus 로고
    • Homology and the optimization of DNA sequence data
    • 10.1111/j.1096-0031.2001.tb00100.x
    • W Wheeler 2001 Homology and the optimization of DNA sequence data Cladistics 17 1 S3 S11 10.1111/j.1096-0031.2001.tb00100.x
    • (2001) Cladistics , vol.17 , Issue.1
    • Wheeler, W.1
  • 8
    • 0036364823 scopus 로고    scopus 로고
    • Phylogeny of the holometabolous insect orders based on 18S ribosomal DNA: When bad things happen to good data
    • Birkhaeuser Boston Birkhaeuser Publishing Ltd Cambridge
    • Whiting MF (2002) Phylogeny of the holometabolous insect orders based on 18S ribosomal DNA: when bad things happen to good data. In: DeSalle R, Giribet G, Wheeler W (eds) EXS (Basel) molecular systematics and evolution: theory and practice. Birkhaeuser Boston Birkhaeuser Publishing Ltd, Cambridge, pp 69-83
    • (2002) EXS (Basel) Molecular Systematics and Evolution: Theory and Practice , pp. 69-83
    • Whiting, M.F.1    Desalle, R.2    Giribet, G.3    Wheeler, W.4
  • 9
    • 0031084115 scopus 로고    scopus 로고
    • The Strepsiptera problem: Phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology
    • 10.2307/2413635
    • MF Whiting JC Carpenter QD Wheeler WC Wheeler 1997 The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology Syst Biol 46 1 1 68 10.2307/2413635
    • (1997) Syst Biol , vol.46 , Issue.1 , pp. 1-68
    • Whiting, M.F.1    Carpenter, J.C.2    Wheeler, Q.D.3    Wheeler, W.C.4
  • 10
    • 0032007661 scopus 로고    scopus 로고
    • Preparation and purification of DNA from insects for AFLP analysis
    • DOI 10.1046/j.1365-2583.1998.71048.x
    • A Reineke P Karlovsky CP Zebitz 1998 Preparation and purification of DNA from insects for AFLP analysis Insect Mol Biol 7 1 95 99 10.1046/j.1365-2583. 1998.71048.x (Pubitemid 28050279)
    • (1998) Insect Molecular Biology , vol.7 , Issue.1 , pp. 95-99
    • Reineke, A.1    Karlovsky, P.2    Zebitz, C.P.W.3
  • 11
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • TA Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Acids Symp Ser 41 95 98
    • (1999) Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 12
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 24 4876 4882 10.1093/nar/25.24.4876 (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 13
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • DOI 10.1093/nar/25.5.955
    • TM Lowe SR Eddy 1997 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res 25 5 955 964 10.1093/nar/25.5.955 (Pubitemid 27298263)
    • (1997) Nucleic Acids Research , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 15
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • 10.1093/bioinformatics/17.8.754
    • JP Huelsenbeck F Ronquist 2001 MRBAYES: Bayesian inference of phylogenetic trees Bioinformatics 17 8 754 755 10.1093/bioinformatics/17.8.754
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 16
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • 10.1093/bioinformatics/14.9.817
    • D Posada KA Crandall 1998 Modeltest: testing the model of DNA substitution Bioinformatics 14 814 818 10.1093/bioinformatics/14.9.817
    • (1998) Bioinformatics , vol.14 , pp. 814-818
    • Posada, D.1    Crandall, K.A.2
  • 18
    • 23144433822 scopus 로고    scopus 로고
    • PHYML online-a web server for fast maximum likelihood-based phylogenetic inference
    • S Guindon F Lethiec P Duroux O Gascuel 2005 PHYML online-a web server for fast maximum likelihood-based phylogenetic inference Nucleic Acids Res 33 Web Server issue W557 W559
    • (2005) Nucleic Acids Res , vol.33 , Issue.WEB SERVER ISSUE
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 19
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • 10.2307/2408678
    • J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791 10.2307/2408678
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 20
    • 0034610287 scopus 로고    scopus 로고
    • A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus
    • 10.1073/pnas.250402997
    • DV Lavrov WM Brown JL Boore 2000 A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus Proc Natl Acad Sci USA 97 25 13738 13742 10.1073/pnas.250402997
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.25 , pp. 13738-13742
    • Lavrov, D.V.1    Brown, W.M.2    Boore, J.L.3
  • 21
    • 19944386942 scopus 로고    scopus 로고
    • Insect mitochondrial genomics: The complete mitochondrial genome sequence of the meadow spittlebug Philaenus spumarius (Hemiptera: Auchenorrhyncha: Cercopoidae)
    • DOI 10.1139/g04-090
    • JB Stewart AT Beckenbach 2005 Insect mitochondrial genomics: the complete mitochondrial genome sequence of the meadow spittlebug Philaenus spumarius (Hemiptera: Auchenorrhyncha: Cercopoidae) Genome 48 1 46 54 10.1139/g04-090 (Pubitemid 40748014)
    • (2005) Genome , vol.48 , Issue.1 , pp. 46-54
    • Stewart, J.B.1    Beckenbach, A.T.2
  • 22
    • 0344719444 scopus 로고    scopus 로고
    • Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus
    • DOI 10.1016/S1055-7903(03)00194-5
    • KL Adams JD Palmer 2003 Evolution of mitochondrial gene content: gene loss and transfer to the nucleus Mol Phylogenet Evol 29 3 380 395 10.1016/S1055-7903(03)00194-5 (Pubitemid 37491885)
    • (2003) Molecular Phylogenetics and Evolution , vol.29 , Issue.3 , pp. 380-395
    • Adams, K.L.1    Palmer, J.D.2
  • 23
    • 38349163697 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the onychophoran Epiperipatus biolleyi reveals a unique transfer RNA set and provides further support for the ecdysozoa hypothesis
    • 10.1093/molbev/msm223
    • L Podsiadlowski A Braband G Mayer 2008 The complete mitochondrial genome of the onychophoran Epiperipatus biolleyi reveals a unique transfer RNA set and provides further support for the ecdysozoa hypothesis Mol Biol Evol 25 1 42 51 10.1093/molbev/msm223
    • (2008) Mol Biol Evol , vol.25 , Issue.1 , pp. 42-51
    • Podsiadlowski, L.1    Braband, A.2    Mayer, G.3
  • 24
    • 0034941685 scopus 로고    scopus 로고
    • Complete mitochondrial genome sequence of the polychaete annelid Platynereis dumerilii
    • JL Boore 2001 Complete mitochondrial genome sequence of the polychaete annelid Platynereis dumerilii Mol Biol Evol 18 7 1413 1416
    • (2001) Mol Biol Evol , vol.18 , Issue.7 , pp. 1413-1416
    • Boore, J.L.1
  • 25
    • 33747376866 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda)
    • DOI 10.1186/1471-2164-7-182
    • JL Boore 2006 The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda) BMC Genom 7 182 10.1186/1471-2164-7-182 (Pubitemid 44240773)
    • (2006) BMC Genomics , vol.7 , pp. 182
    • Boore, J.L.1
  • 26
    • 0033977831 scopus 로고    scopus 로고
    • Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: Sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa
    • JL Boore WM Brown 2000 Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa Mol Biol Evol 17 1 87 106
    • (2000) Mol Biol Evol , vol.17 , Issue.1 , pp. 87-106
    • Boore, J.L.1    Brown, W.M.2
  • 27
    • 0034883153 scopus 로고    scopus 로고
    • Increased rate of gene rearrangement in the mitochondrial genomes of three orders of hemipteroid insects
    • R Shao NJ Campbell ER Schmidt SC Barker 2001 Increased rate of gene rearrangement in the mitochondrial genomes of three orders of hemipteroid insects Mol Biol Evol 18 9 1828 1832
    • (2001) Mol Biol Evol , vol.18 , Issue.9 , pp. 1828-1832
    • Shao, R.1    Campbell, N.J.2    Schmidt, E.R.3    Barker, S.C.4
  • 28
    • 33846820322 scopus 로고    scopus 로고
    • Mitochondrial genome of the homoscleromorph Oscarella carmela (Porifera, Demospongiae) reveals unexpected complexity in the common ancestor of sponges and other animals
    • DOI 10.1093/molbev/msl167
    • X Wang DV Lavrov 2007 Mitochondrial genome of the homoscleromorph Oscarella carmela (Porifera, Demospongiae) reveals unexpected complexity in the common ancestor of sponges and other animals Mol Biol Evol 24 2 363 373 10.1093/molbev/msl167 (Pubitemid 46204369)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.2 , pp. 363-373
    • Wang, X.1    Lavrov, D.V.2
  • 29
    • 0019444843 scopus 로고
    • TRNA punctuation model of RNA processing in human mitochondria
    • DOI 10.1038/290470a0
    • D Ojala J Montoya G Attardi 1981 tRNA punctuation model of RNA processing in human mitochondria Nature 290 5806 470 474 10.1038/290470a0 (Pubitemid 11159076)
    • (1981) Nature , vol.290 , Issue.5806 , pp. 470-474
    • Ojala, D.1    Montoya, J.2    Attardi, G.3
  • 30
    • 0028300297 scopus 로고
    • Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA
    • DJ Stanton LL Daehler CC Moritz WM Brown 1994 Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA Genetics 137 1 233 241
    • (1994) Genetics , vol.137 , Issue.1 , pp. 233-241
    • Stanton, D.J.1    Daehler, L.L.2    Moritz, C.C.3    Brown, W.M.4
  • 31
    • 0035133287 scopus 로고    scopus 로고
    • Mitochondrial genomics flies high
    • DOI 10.1016/S0169-5347(00)02036-X, PII S016953470002036X
    • D Rand 2001 Mitochondrial genomics flies high Trends Ecol Evol 16 1 2 4 10.1016/S0169-5347(00)02036-X (Pubitemid 32102333)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.1 , pp. 2-4
    • Rand, D.1
  • 32
    • 0027219130 scopus 로고
    • Endotherms, ectotherms, and mitochondrial genome-size variation
    • 10.1007/BF00175505
    • DM Rand 1993 Endotherms, ectotherms, and mitochondrial genome-size variation J Mol Evol 37 3 281 295 10.1007/BF00175505
    • (1993) J Mol Evol , vol.37 , Issue.3 , pp. 281-295
    • Rand, D.M.1
  • 33
    • 25444436951 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the stomatopod crustacean Squilla mantis
    • DOI 10.1186/1471-2164-6-105
    • CE Cook 2005 The complete mitochondrial genome of the stomatopod crustacean Squilla mantis BMC Genom 6 105 10.1186/1471-2164-6-105 (Pubitemid 41372434)
    • (2005) BMC Genomics , vol.6 , pp. 105
    • Cook, C.E.1
  • 34
    • 0027083319 scopus 로고
    • Animal mitochondrial DNA: Structure and evolution
    • 10.1016/S0074-7696(08)62066-5
    • DR Wolstenholme 1992 Animal mitochondrial DNA: structure and evolution Int Rev Cytol 141 173 216 10.1016/S0074-7696(08)62066-5
    • (1992) Int Rev Cytol , vol.141 , pp. 173-216
    • Wolstenholme, D.R.1
  • 35
    • 5444246169 scopus 로고    scopus 로고
    • Organization of the mitochondrial genomes of whiteflies, aphids, and psyllids (Hemiptera, Sternorrhyncha)
    • DOI 10.1186/1471-2148-4-25
    • ML Thao L Baumann P Baumann 2004 Organization of the mitochondrial genomes of whiteflies, aphids, and psyllids (Hemiptera, Sternorrhyncha) BMC Evol Biol 4 25 10.1186/1471-2148-4-25 (Pubitemid 39364126)
    • (2004) BMC Evolutionary Biology , vol.4 , pp. 25
    • Thao, M.L.1    Baumann, L.2    Baumann, P.3
  • 36
    • 0043123037 scopus 로고    scopus 로고
    • Mreps: Efficient and flexible detection of tandem repeats in DNA
    • DOI 10.1093/nar/gkg617
    • R Kolpakov G Bana G Kucherov 2003 mreps: Efficient and flexible detection of tandem repeats in DNA Nucleic Acids Res 31 13 3672 3678 10.1093/nar/gkg617 (Pubitemid 37442220)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3672-3678
    • Kolpakov, R.1    Bana, G.2    Kucherov, G.3
  • 38
    • 0029049426 scopus 로고
    • Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
    • 10.1007/BF01215182
    • NT Perna TD Kocher 1995 Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes J Mol Evol 41 3 353 358 10.1007/BF01215182
    • (1995) J Mol Evol , vol.41 , Issue.3 , pp. 353-358
    • Perna, N.T.1    Kocher, T.D.2
  • 39
    • 19044389661 scopus 로고    scopus 로고
    • Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences
    • DOI 10.1080/10635150590947843
    • A Hassanin N Leger J Deutsch 2005 Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences Syst Biol 54 2 277 298 10.1080/10635150590947843 (Pubitemid 40707808)
    • (2005) Systematic Biology , vol.54 , Issue.2 , pp. 277-298
    • Hassanin, A.1    Leger, N.2    Deutsch, J.3
  • 40
    • 12344282043 scopus 로고    scopus 로고
    • A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods
    • DOI 10.1093/molbev/msi012
    • A Gibson V Gowri-Shankar PG Higgs M Rattray 2005 A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods Mol Biol Evol 22 2 251 264 10.1093/molbev/msi012 (Pubitemid 40130193)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.2 , pp. 251-264
    • Gibson, A.1    Gowri-Shankar, V.2    Higgs, P.G.3    Rattray, M.4
  • 41
    • 0029970817 scopus 로고    scopus 로고
    • Maximizing transcription efficiency causes codon usage bias
    • X Xia 1996 Maximizing transcription efficiency causes codon usage bias Genetics 144 3 1309 1320
    • (1996) Genetics , vol.144 , Issue.3 , pp. 1309-1320
    • Xia, X.1
  • 42
    • 4744360712 scopus 로고    scopus 로고
    • How reliable re-adjustment is: Correspondence regarding A. Fuglsang, The 'effective number of codons' revisited
    • DOI 10.1016/j.bbrc.2004.08.213, PII S0006291X04020054
    • SA Marashi HS Najafabadi 2004 How reliable re-adjustment is: correspondence regarding A. Fuglsang, The 'effective number of codons' revisited Biochem Biophys Res Commun 324 1 1 2 10.1016/j.bbrc.2004.08.213 (Pubitemid 39311452)
    • (2004) Biochemical and Biophysical Research Communications , vol.324 , Issue.1 , pp. 1-2
    • Marashi, S.-A.1    Najafabadi, H.S.2
  • 43
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • DOI 10.1016/0378-1119(90)90491-9
    • F Wright 1990 The 'effective number of codons' used in a gene Gene 87 1 23 29 10.1016/0378-1119(90)90491-9 (Pubitemid 20139850)
    • (1990) Gene , vol.87 , Issue.1 , pp. 23-29
    • Wright, F.1
  • 44
    • 0000404433 scopus 로고
    • Fossil history and the evolution of hexapod structures
    • CSIRO 2 Melbourne University Press Carlton
    • Kukalova-Peck J (1991) Fossil history and the evolution of hexapod structures. In: CSIRO (ed) The insects of Australia, vol 1, 2nd edn. Melbourne University Press, Carlton, pp 141-179
    • (1991) The Insects of Australia, Vol 1, 2nd Edn. , pp. 141-179
    • Kukalova-Peck, J.1
  • 46
    • 0000533828 scopus 로고
    • Phylogeny of extant hexapods
    • CSIRO 2 Melbourne University Press Carlton
    • Kristensen NP (1991) Phylogeny of extant hexapods. In: CSIRO (ed) The insects of australia, vol 1, 2nd edn. Melbourne University Press, Carlton, pp 125-140
    • (1991) The Insects of Australia, Vol 1, 2nd Edn. , pp. 125-140
    • Kristensen, N.P.1


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